View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18636_low_2 (Length: 600)
Name: NF18636_low_2
Description: NF18636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18636_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 493; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 8 - 557
Target Start/End: Original strand, 40063292 - 40063843
Alignment:
| Q |
8 |
catcacagacattgtaagtgttgcaaattttcaatgaaaaagagtttaaacatgaaataaa--tcttgatctacgatgtgactgagacattaatcccatc |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40063292 |
catcacagacattgtaagtgttgcaaattttcaatgaaaaagagtttaaacatgaaaaaaaaatcttgatctacgatgtgactgagacattaatcccatc |
40063391 |
T |
|
| Q |
106 |
tcgcagataccatgtaccacgatcgtttttgaaaccaaacggcaacactcttatattgtttgaggaaaatggcggtgatccaacacaaatagcttttgct |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40063392 |
tcgcagataccatgtaccacgatcgtttttgaaaccaaacggcaacactcttgtattgtttgaggaaaatggcggtgatccaacacaaatagcttttgct |
40063491 |
T |
|
| Q |
206 |
acaaaacagctagaaagtttgtgtgcacatgtatctgattctcacccacctcaaatagacttgtggaaccaagatacagaatcagggggaaaagtagggc |
305 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
40063492 |
acaaaacagctagaaagtttgtgtgcccatgtatctgattctcacccacctcaaatagacttgtggaaccaagatacaacatcatggggaaaagtagggc |
40063591 |
T |
|
| Q |
306 |
ctgcactgttgctcaactgtcctaatcataatcaggtaatctcttccatcaaatttgcaagctatggaacaccactggggacatgcggaaacttctaccg |
405 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40063592 |
ctgcactgttgctcaactgtcctaatcataatcaggtaatcttttccatcaaatttgcaagctatggaacaccactggggacatgcggaaacttctaccg |
40063691 |
T |
|
| Q |
406 |
cggacgctgcagcagcaataaagcgctgtcaattgtaaagaaggtgtttatctgaattcctgttcccttgctaatttgttatgtttcacttaggtttaga |
505 |
Q |
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| T |
40063692 |
cggacgctgcagcagcaataaggcgctgtcaattgtaaagaaggtgtttatctgaattcttgttcccttgctaatttgttatgtttcacttaggtttaga |
40063791 |
T |
|
| Q |
506 |
ttgactatgttgggttatttgtttgtgttttcatatctgttttcttttgaac |
557 |
Q |
| |
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|| ||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
40063792 |
ttaactatgttgggttatttgtttgtgtttccatatctattttcttttgaac |
40063843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 10 - 518
Target Start/End: Original strand, 40081645 - 40082154
Alignment:
| Q |
10 |
tcacagacattgtaagtgttgcaaattttcaatgaaaaagagtttaaacat-gaaataaatcttgatctacgatgtgactgagacattaatcccatctcg |
108 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||| |||||||||| |||| |||||||||||| ||||| ||||||||| ||||| ||||| | |
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| T |
40081645 |
tcacagacattgtaagtgttgcaaattttcaataaaaaaaagtttaaacaaagaaaataatcttgatctatgatgttactgagacaataatcgcatcttg |
40081744 |
T |
|
| Q |
109 |
cagataccatgtaccacgatcgtttttgaaaccaaacggcaacactcttatattgtttgaggaaaatggcggtgatccaacacaaatagcttttgctaca |
208 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||| ||||||||||| |
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| T |
40081745 |
cagataccatgtaccacgatcgtttttgaaaccaaacggcaacactcttgtattgtttgaggaaaatggcggtgatccgacccaaatatcttttgctaca |
40081844 |
T |
|
| Q |
209 |
aaacagctagaaagtttgtgtgcacatgtatctgattctcacccacctcaaatagacttgtggaaccaagatacagaatcagggggaaaagtagggcctg |
308 |
Q |
| |
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|||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40081845 |
aaacagctggaaagtgtgtgttcacatgtatctgattctcacccacctcaaatagacttgtggaaccaagatacagaatcagggggaaaagtagggcctg |
40081944 |
T |
|
| Q |
309 |
cactgttgctcaactgtcctaatcataatcaggtaatctcttccatcaaatttgcaagctatggaacaccactggggacatgcggaaacttctaccgcgg |
408 |
Q |
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| |||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||| | ||||| || ||||||||||||||||| |
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| T |
40081945 |
ctctgttgctcagttgtcctaatcataatcaggtaatttcatccatcaaatttgcaagctatggaacacctttagggacgtgtggaaacttctaccgcgg |
40082044 |
T |
|
| Q |
409 |
acgctgcagcagcaataaagcgctgtcaattgtaaagaaggtgtttatctgaattcctgttcccttgctaatttgttatgtttcacttaggtttagattg |
508 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| | ||||||||||| |
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| T |
40082045 |
acgctgcagcagcaataaggcgctgtcaattgtaaagaaggtgtttatctgaactcctgttcccttactaatttgttatgtttcacattggtttagattg |
40082144 |
T |
|
| Q |
509 |
actatgttgg |
518 |
Q |
| |
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|||||||||| |
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| T |
40082145 |
actatgttgg |
40082154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 8 - 496
Target Start/End: Original strand, 40093923 - 40094414
Alignment:
| Q |
8 |
catcacagacattgtaagtgttgcaaattttcaatgaaaaagagtttaaacatga---aataaatcttgatctacgatgtgactgagacattaatcccat |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||| ||||||| ||||||||||||| ||| |
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| T |
40093923 |
catcacagacattgtaagtgttgcaaattttcaatgaagaagagtttaaacatgagaaaaaaaatcttgatctatgatgtgattgagacattaatctcat |
40094022 |
T |
|
| Q |
105 |
ctcgcagataccatgtaccacgatcgtttttgaaaccaaacggcaacactcttatattgtttgaggaaaatggcggtgatccaacacaaatagcttttgc |
204 |
Q |
| |
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||| ||||||||| || |||| ||||||||||||||||| || ||||||||| ||||||||||||||| ||| |||||||||||||||||| ||||||| |
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| T |
40094023 |
ctcacagataccacgtgccacagtcgtttttgaaaccaaatggaaacactcttgtattgtttgaggaaagtggtggtgatccaacacaaatatcttttgc |
40094122 |
T |
|
| Q |
205 |
tacaaaacagctagaaagtttgtgtgcacatgtatctgattctcacccacctcaaatagacttgtggaaccaagatacagaatcagggggaaaagtaggg |
304 |
Q |
| |
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|||||||||| ||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40094123 |
tacaaaacagataggaagtgtgtgtgcccatgtatctgattctcacccacctcaaatagacttgtggaaccaagatacagaatcagggggaaaagtaggg |
40094222 |
T |
|
| Q |
305 |
cctgcactgttgctcaactgtcctaatcataatcaggtaatctcttccatcaaatttgcaagctatggaacaccactggggacatgcggaaacttctacc |
404 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||| |
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| T |
40094223 |
cctgcactgttgctcaactgtcctaatcataatcaggtaatatcttccatcaaatttgcaagctatggaacaccactagggacgtgtggaaacttctacc |
40094322 |
T |
|
| Q |
405 |
gcggacgctgcagcagcaataaagcgctgtcaattgtaaagaaggtgtttatctgaattcctgttcccttgctaatttgttatgtttcactt |
496 |
Q |
| |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||| ||||||| |
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| T |
40094323 |
gcggacgctgcagcagcaataagacactgtcaattgtaaagaaggtgtttatctggattcatgttccctttctaatttgttatggttcactt |
40094414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 147 - 425
Target Start/End: Complemental strand, 22012393 - 22012115
Alignment:
| Q |
147 |
gcaacactcttatattgtttgaggaaaatggcggtgatccaacacaaatagcttttgctacaaaacagctagaaagtttgtgtgcacatgtatctgattc |
246 |
Q |
| |
|
|||||||| || ||||||||||||||| || || || || ||| ||||| |||||| |||||||||| |||||||| ||||| |||||||| |||| || |
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|
| T |
22012393 |
gcaacacttttgtattgtttgaggaaagcggaggcgaccctacaaaaatatcttttggtacaaaacagatagaaagtgtgtgttcacatgtaactgaatc |
22012294 |
T |
|
| Q |
247 |
tcacccacctcaaatagacttgtggaaccaagatacagaatcagggggaaaagtagggcctgcactgttgctcaactgtcctaatcataatcaggtaatc |
346 |
Q |
| |
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|||||| || | ||||| ||||| || ||||||||| |||| ||||| |||| ||||| || | || ||| ||| |||||||| ||| |
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| T |
22012293 |
tcaccctccacctgtagacacatggaattcgaatgcagaatcagaaagaaaggtaggtcctgtactgtcactggaatgcccttatcctaatcaggcgatc |
22012194 |
T |
|
| Q |
347 |
tcttccatcaaatttgcaagctatggaacaccactggggacatgcggaaacttctaccgcggacgctgcagcagcaata |
425 |
Q |
| |
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|||||||| ||||||||||||| |||||| || | ||||| || ||||||| | ||| |||| ||||||||||||||| |
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|
| T |
22012193 |
tcttccattaaatttgcaagctttggaacgcctcgtgggacttgtggaaactacaaccacggaagctgcagcagcaata |
22012115 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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