View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18636_low_20 (Length: 330)
Name: NF18636_low_20
Description: NF18636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18636_low_20 |
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| [»] chr2 (9 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-172; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 10 - 330
Target Start/End: Complemental strand, 2486769 - 2486449
Alignment:
| Q |
10 |
attatactacataagatgatctaaaatgaacattattttgaaattttaaaacattaaaaactatataattatcaggaactcatttcatacattttcccag |
109 |
Q |
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| T |
2486769 |
attatactacataagatgaactcaaatgaacattattttgaaattttaaaacattaaaaactatataattatcaggaactcatttcatacattttcccag |
2486670 |
T |
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| Q |
110 |
atattattaattcttgatatgaatcacttagtatggtaattggccagcaatgttaccagggggatcataattgcaagtaacaaatgtgccaccattatca |
209 |
Q |
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| T |
2486669 |
atattattaattcttgatatgaatcacttagtatggtaattggccagcaatgttaccagggggatcataattgcaagtaacaaatgagccaccattatca |
2486570 |
T |
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| Q |
210 |
catttcactttgccacatccaacacgtagtgatttttcccaaaccacctgagtataatggtggcattcatgaccatcaatacatgagttagcatagtgat |
309 |
Q |
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| T |
2486569 |
catttcactttgccacatccaacacgtagtgatttttcccaaacaacctgagtataatggtggcattcatgaccatcaatacatgagttagcatagtgat |
2486470 |
T |
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| Q |
310 |
taaagtatggttcttcatcca |
330 |
Q |
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||||||||||||||||||||| |
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| T |
2486469 |
taaagtatggttcttcatcca |
2486449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 123 - 268
Target Start/End: Complemental strand, 2471135 - 2470990
Alignment:
| Q |
123 |
ttgatatgaatcacttagtatggtaattggccagcaatgttaccagggggatcataattgcaagtaacaaatgtgccaccattatcacatttcactttgc |
222 |
Q |
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| T |
2471135 |
ttgatctgagtcacttagtacggtaattgaccagcaatgttaccaggtgggtcataattgcaagtaatgaatgtgcctccattatcacatctcactttgc |
2471036 |
T |
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| Q |
223 |
cacatccaacacgtagtgatttttcccaaaccacctgagtataatg |
268 |
Q |
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| T |
2471035 |
cacatccaacacgttgtgatttttcccatatcacctgggtataatg |
2470990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 144 - 241
Target Start/End: Complemental strand, 2478950 - 2478853
Alignment:
| Q |
144 |
ggtaattggccagcaatgttaccagggggatcataattgcaagtaacaaatgtgccaccattatcacatttcactttgccacatccaacacgtagtga |
241 |
Q |
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| T |
2478950 |
ggtaattggccaggaatgttacctgggggataataattacaagtaacaaatgttccaccattattacatttcactttgccacatccaagacgtagtga |
2478853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 144 - 241
Target Start/End: Complemental strand, 2483454 - 2483357
Alignment:
| Q |
144 |
ggtaattggccagcaatgttaccagggggatcataattgcaagtaacaaatgtgccaccattatcacatttcactttgccacatccaacacgtagtga |
241 |
Q |
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| T |
2483454 |
ggtaattggccaggaatattacctgggggataataattacaagtaacaaatgttccaccattattacatttcactttgccacatccaagacgtagtga |
2483357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 126 - 278
Target Start/End: Complemental strand, 2474379 - 2474227
Alignment:
| Q |
126 |
atatgaatcacttagtatggtaattggccagcaatgttaccagggggatcataattgcaagtaacaaatgtgccaccattatcacatttcactttgccac |
225 |
Q |
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| T |
2474379 |
atatgaatcaattagtatggtctttcgccaatatagttgccaggggggtcgtaattgcaagtaatgaatgttcctccattatcacatttcactttggcac |
2474280 |
T |
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| Q |
226 |
atccaacacgtagtgatttttcccaaaccacctgagtataatggtggcattca |
278 |
Q |
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|||||| |||| || ||| |||||||||||||||||||||| |||||||| |
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| T |
2474279 |
atccaatacgttttgtgtttctccaaaccacctgagtataatggaggcattca |
2474227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 269
Target Start/End: Original strand, 3063339 - 3063405
Alignment:
| Q |
203 |
attatcacatttcactttgccacatccaacacgtagtgatttttcccaaaccacctgagtataatgg |
269 |
Q |
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|||||||||| |||||||| |||||||||||||| |||| ||| |||||| ||||||||||||||| |
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| T |
3063339 |
attatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacctgagtataatgg |
3063405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 269
Target Start/End: Complemental strand, 2462658 - 2462592
Alignment:
| Q |
203 |
attatcacatttcactttgccacatccaacacgtagtgatttttcccaaaccacctgagtataatgg |
269 |
Q |
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|||||||||| |||||||| |||||||||||||| |||| ||| |||||| ||||| ||||||||| |
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| T |
2462658 |
attatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacctgggtataatgg |
2462592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 269
Target Start/End: Complemental strand, 2466706 - 2466640
Alignment:
| Q |
203 |
attatcacatttcactttgccacatccaacacgtagtgatttttcccaaaccacctgagtataatgg |
269 |
Q |
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|||||||||| |||||||| |||||||||||||| |||| ||| |||||| ||||| ||||||||| |
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| T |
2466706 |
attatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacctgggtataatgg |
2466640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 262
Target Start/End: Complemental strand, 2470108 - 2469972
Alignment:
| Q |
126 |
atatgaatcacttagtatggtaattggccagcaatgttaccagggggatcataattgcaagtaacaaatgtgccaccattatcacatttcactttgccac |
225 |
Q |
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||||||||||||||||||||| || |||| | ||| || || || || ||||||||||||| ||||| || || |||| ||||||||||||| ||| |
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| T |
2470108 |
atatgaatcacttagtatggtctttcgccaatatagttgcctggtgggtcgtaattgcaagtaatgaatgttcctccgttattacatttcactttggcac |
2470009 |
T |
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| Q |
226 |
atccaacacgtagtgatttttcccaaaccacctgagt |
262 |
Q |
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|||||| ||| ||| ||| ||||||||||||||| |
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| T |
2470008 |
atccaatccgttgtgtgtttctccaaaccacctgagt |
2469972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 269
Target Start/End: Complemental strand, 18015981 - 18015915
Alignment:
| Q |
203 |
attatcacatttcactttgccacatccaacacgtagtgatttttcccaaaccacctgagtataatgg |
269 |
Q |
| |
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|||||||||| |||||||| |||||||||||||| |||| ||| |||||| ||||||||||||||| |
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| T |
18015981 |
attatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacctgagtataatgg |
18015915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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