View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18636_low_25 (Length: 260)

Name: NF18636_low_25
Description: NF18636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18636_low_25
NF18636_low_25
[»] chr7 (4 HSPs)
chr7 (1-260)||(39178805-39179064)
chr7 (54-197)||(39184941-39185084)
chr7 (15-54)||(39185103-39185142)
chr7 (7-45)||(39217711-39217749)


Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 39179064 - 39178805
Alignment:
Q  1 tgttaaatttattgtcatcatttgaatatatgctacttagtggtaaagaaacgtggacgaacattataattgtttgggatcaggagtctaaaagcacggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39179064 tgttaaatttattgtcatcatttgaatatatgctacttagtggtaaagaaacgtggacgaacattataattgtttgggatcaggagtctaaaagcacggt 39178965  T
Q  101 ctacattaatagggaaagtaacatattacaagagcaaatttgacaccataacttgaccccaaaacttgacaatgaacttatcctatctcgatcctaacca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39178964 ctacattaatagggaaagtaacatattacaagagcaaatttgacaccataacttgaccccaaaacttgacaatgaacttatcctatctcgatcctaacca 39178865  T
Q  201 tggtgcttcatcactcattcactcacatttggatttctaaaatttccttcctcgagtaag 260  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39178864 tggcgcttcatcactcattcactcacatttggatttctaaaatttccttcctcgagtaag 39178805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 54 - 197
Target Start/End: Complemental strand, 39185084 - 39184941
Alignment:
Q  54 tggacgaacattataattgtttgggatcaggagtctaaaagcacggtctacattaatagggaaagtaacatattacaagagcaaatttgacaccataact 153  Q
    |||| |||||||||||||||||||||||||||||| |||||| || ||||||||||||||| ||||||||||||||||||| |||||||  |||||||||    
T  39185084 tggatgaacattataattgtttgggatcaggagtccaaaagcgcgatctacattaatagggcaagtaacatattacaagagtaaatttggtaccataact 39184985  T
Q  154 tgaccccaaaacttgacaatgaacttatcctatctcgatcctaa 197  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  39184984 tgaccccaaaacttgataatgaacttatcctatctcgatcctaa 39184941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 39185142 - 39185103
Alignment:
Q  15 tcatcatttgaatatatgctacttagtggtaaagaaacgt 54  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  39185142 tcatcatttgaatatatgctacttagtggtaaagaaacgt 39185103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 39217749 - 39217711
Alignment:
Q  7 atttattgtcatcatttgaatatatgctacttagtggta 45  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  39217749 atttattttcatcatttgaatatatgctacttagaggta 39217711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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