View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18636_low_29 (Length: 244)
Name: NF18636_low_29
Description: NF18636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18636_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 4389903 - 4389681
Alignment:
| Q |
18 |
atgatgttggaagattacgagaagaaaatacctgtttatgaagagataattacaaagggtnnnnnnnttacaagttttatttattcgagggattctctca |
117 |
Q |
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| T |
4389903 |
atgatgttggaagattacgagaagaaaatacctgtttatgaagagataattacaaagggtaaaaaaattacaagttttatttattcgagggattctctca |
4389804 |
T |
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| Q |
118 |
tttctctattgcataagtttacggaaggagcagatttggtgagacaaggcattacttgttgtgccacaacttacttaactttagaccgtcttcaagagac |
217 |
Q |
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| T |
4389803 |
tttctctattgcataagtttacggaaggaacagatttggtgagacaaggcattacttcttgtgccacaacttacttaactttagaccgtcttcaagagac |
4389704 |
T |
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| Q |
218 |
caagggagctttgagaataatat |
240 |
Q |
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||||||||||||||||| ||||| |
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| T |
4389703 |
caagggagctttgagaagaatat |
4389681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 4377218 - 4377002
Alignment:
| Q |
18 |
atgatgttggaagattacgagaagaaaatacctgtttatgaagagataattacaaagggtnnnnnnnttacaagttttatttattcgagggattctctca |
117 |
Q |
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||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| |
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| T |
4377218 |
atgatgttggaagattatgagaaaaagatacctgtttatgaagagataattacaaagggtaaaaaaattacagattttatttcttcgagggattctctca |
4377119 |
T |
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| Q |
118 |
tttctctattgcataagtttacggaaggagcagatttggtgagacaaggcattacttgttgtgccacaacttacttaactttagaccgtcttcaagagac |
217 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4377118 |
tttctctattgcataagtttacggaaggaatagatttggtgagacaaggcattacttcttgtgccacaacttacttaactttagaccgtcttcatgagac |
4377019 |
T |
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| Q |
218 |
caagggagctttgagaa |
234 |
Q |
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||||| ||||||||||| |
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| T |
4377018 |
caaggaagctttgagaa |
4377002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 4384789 - 4384575
Alignment:
| Q |
20 |
gatgttggaagattacgagaagaaaatacctgtttatgaagagataattacaaagggtnnnnnnnttacaagttttatttattcgagggattctctcatt |
119 |
Q |
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||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||| |
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| T |
4384789 |
gatgttggaagattatgagaagaagatacctgttcatgaagagataattacaaagggtaaaaaaattacaacctttatttattcgagggcttctctcatt |
4384690 |
T |
|
| Q |
120 |
tctctattgcataagtttacggaaggagcagatttggtgagacaaggcattacttgttgtgccacaacttacttaactttagaccgtcttcaagagacca |
219 |
Q |
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| T |
4384689 |
tctctattgcataagtttacgcaaggaatagatttggtgagacaaggcattacatgttgtgccacgtcttacttaactttatactgtcttcatgagacca |
4384590 |
T |
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| Q |
220 |
agggagctttgagaa |
234 |
Q |
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| T |
4384589 |
agggagctttgagaa |
4384575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 234
Target Start/End: Original strand, 4414782 - 4414867
Alignment:
| Q |
149 |
agatttggtgagacaaggcattacttgttgtgccacaacttacttaactttagaccgtcttcaagagaccaagggagctttgagaa |
234 |
Q |
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||||||||||| ||| ||||||||||||||||||||| ||||| ||||||||| || |||| |||| | | ||||||||||||| |
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| T |
4414782 |
agatttggtgaaacagggcattacttgttgtgccacatcttacctaactttaggttgtattcatgagaacgaaggagctttgagaa |
4414867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 130
Target Start/End: Original strand, 5725711 - 5725748
Alignment:
| Q |
93 |
tttatttattcgagggattctctcatttctctattgca |
130 |
Q |
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| T |
5725711 |
tttatttattcaagtgattctctcatttctctattgca |
5725748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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