View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18636_low_33 (Length: 213)

Name: NF18636_low_33
Description: NF18636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18636_low_33
NF18636_low_33
[»] chr6 (15 HSPs)
chr6 (1-213)||(6472715-6472927)
chr6 (1-210)||(13035416-13035626)
chr6 (1-121)||(6505777-6505897)
chr6 (1-213)||(6515773-6515985)
chr6 (26-128)||(6520324-6520426)
chr6 (2-213)||(6465628-6465842)
chr6 (3-128)||(1841646-1841771)
chr6 (26-213)||(6528518-6528708)
chr6 (42-121)||(6497008-6497087)
chr6 (43-121)||(6461585-6461663)
chr6 (3-121)||(6457672-6457790)
chr6 (2-73)||(1822092-1822163)
chr6 (2-128)||(1838775-1838900)
chr6 (14-67)||(6526679-6526732)
chr6 (95-174)||(6526737-6526816)
[»] chr1 (1 HSPs)
chr1 (53-128)||(35231196-35231274)
[»] chr7 (2 HSPs)
chr7 (43-121)||(4046568-4046646)
chr7 (83-118)||(9665067-9665102)
[»] chr4 (2 HSPs)
chr4 (98-213)||(49569685-49569803)
chr4 (83-118)||(13536091-13536126)


Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 6472927 - 6472715
Alignment:
Q  1 tgattcttcttttacacctttgctcgaatgccaagtaatagaaacaggatctgttttcaaaagccatgaatcaccaacaactccaacaagttcaccatca 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6472927 tgattcttcttttacacctttgcttgaatgccaagtaatagaaacaggatctgttttcaaaagccatgaatcaccaacaactccaacaagttcaccatca 6472828  T
Q  101 atgcttttatacttaaaatcactcaaaaaggtagcattggaatcacttttagacataagctggagatgaagagggtgtgctaacatcagtaaatcacctg 200  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6472827 atgcttttatacttaaaatccctcaaaaaggtagcattggaatcacttttagacataagctggagatgaagagggtgtgctaacatcagtaaatcacctg 6472728  T
Q  201 aacctttcttctc 213  Q
    |||||||||||||    
T  6472727 aacctttcttctc 6472715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 13035626 - 13035416
Alignment:
Q  1 tgattcttcttttacacctttgctcgaatgccaagtaatagaaacaggatctgttttcaaaagccatgaatcaccaacaactccaacaagttcaccatca 100  Q
    |||||||||||||||||||||||| | ||||||||| | |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13035626 tgattcttcttttacacctttgcttgtatgccaagttacagaaacagaatcggttttcaaaagccatgaatcaccaacaactccaacaagttcaccatca 13035527  T
Q  101 atgcttttatacttaaaatcact-caaaaaggtagcattggaatcacttttagacataagctggagatgaagagggtgtgctaacatcagtaaatcacct 199  Q
    ||||||||||||||| |||||||  ||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  13035526 atgcttttatacttataatcactaaaaaaatgtagcattggaatcactttttgagataagctggagatgaagagggtgtgctaacatcagtaaatcacct 13035427  T
Q  200 gaacctttctt 210  Q
    |||||||||||    
T  13035426 gaacctttctt 13035416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 6505777 - 6505897
Alignment:
Q  1 tgattcttcttttacacctttgctcgaatgccaagtaatagaaacaggatctgttttcaaaagccatgaatcaccaacaactccaacaagttcaccatca 100  Q
    |||||| ||||||||||||||||| || |||||||| || |||||||| ||||||||||||| |||||||||||||||||| |||||||| |||||||||    
T  6505777 tgattcgtcttttacacctttgcttgagtgccaagtcatggaaacaggttctgttttcaaaatccatgaatcaccaacaacaccaacaaggtcaccatca 6505876  T
Q  101 atgcttttatacttaaaatca 121  Q
    |||||| ||||||| ||||||    
T  6505877 atgcttgtatacttgaaatca 6505897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 6515985 - 6515773
Alignment:
Q  1 tgattcttcttttacacctttgctcgaatgccaagtaatagaaacaggatctgttttcaaaagccatgaatcaccaacaactccaacaagttcaccatca 100  Q
    |||||||||||||| ||||||||| ||||||||||| | |||||  ||||| |||||||||| |||||||||||||||||| |||||||| || ||||||    
T  6515985 tgattcttcttttatacctttgcttgaatgccaagttacagaaatcggatcggttttcaaaatccatgaatcaccaacaacaccaacaaggtctccatca 6515886  T
Q  101 atgcttttatacttaaaatcactcaaaaaggtagcattggaatcacttttagacataagctggagatgaagagggtgtgctaacatcagtaaatcacctg 200  Q
    ||||||| |||||| ||||||  |||||  ||  |||     | ||||||||| | ||| || | ||||||||||||||||||||  |  ||||||||||    
T  6515885 atgctttgatacttgaaatcatccaaaacagttacatcacttttacttttagataaaagttgaatatgaagagggtgtgctaacaataacaaatcacctg 6515786  T
Q  201 aacctttcttctc 213  Q
    |||||||||||||    
T  6515785 aacctttcttctc 6515773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 26 - 128
Target Start/End: Complemental strand, 6520426 - 6520324
Alignment:
Q  26 gaatgccaagtaatagaaacaggatctgttttcaaaagccatgaatcaccaacaactccaacaagttcaccatcaatgcttttatacttaaaatcactca 125  Q
    ||||||||||| | |||||||||||| |||||||||| ||||||||||||||  || |||||||| || |||||||||||||||||||||||||||||||    
T  6520426 gaatgccaagttacagaaacaggatcagttttcaaaaaccatgaatcaccaatgacaccaacaaggtctccatcaatgcttttatacttaaaatcactca 6520327  T
Q  126 aaa 128  Q
    |||    
T  6520326 aaa 6520324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 2 - 213
Target Start/End: Original strand, 6465628 - 6465842
Alignment:
Q  2 gattcttcttttacacctttgctcgaatgccaagtaatagaaacaggatctgttttcaaaagccatgaatcaccaacaactccaacaagttcaccatcaa 101  Q
    ||||||||||| ||||| ||  | ||||||||||| | |||||| ||||| |||||||| | |||||||||||||||||| |||||||| ||||||||||    
T  6465628 gattcttctttaacacccttagtagaatgccaagttacagaaaccggatcggttttcaacaaccatgaatcaccaacaacaccaacaagatcaccatcaa 6465727  T
Q  102 tgcttttatacttaaaatcactcaaaaaggtagcatt---ggaatcacttttagacataagctggagatgaagagggtgtgctaacatcagtaaatcacc 198  Q
    | ||| |||||||||||||| ||||||  ||| ||||     ||||||| | | ||| |||||| | ||||||||| ||||||||||  | |||||| ||    
T  6465728 tacttctatacttaaaatcattcaaaacagtaacattatcacaatcactatcatacaaaagctgaacatgaagaggatgtgctaacaataataaatcccc 6465827  T
Q  199 tgaacctttcttctc 213  Q
      |||||||||||||    
T  6465828 ccaacctttcttctc 6465842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 128
Target Start/End: Complemental strand, 1841771 - 1841646
Alignment:
Q  3 attcttcttttacacctttgctcgaatgccaagtaatagaaacaggatctgttttcaaaagccatgaatcaccaacaactccaacaagttcaccatcaat 102  Q
    |||||||||||||||||||||| ||||||||||| || ||| || |||| |||||||||| ||||||||||||||||||    ||||| ||  ||| |||    
T  1841771 attcttcttttacacctttgcttgaatgccaagttatggaagcatgatcggttttcaaaatccatgaatcaccaacaacattgacaagctctgcataaat 1841672  T
Q  103 gcttttatacttaaaatcactcaaaa 128  Q
    ||||||||||||||||| ||||||||    
T  1841671 gcttttatacttaaaataactcaaaa 1841646  T

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Target: chr6; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 26 - 213
Target Start/End: Original strand, 6528518 - 6528708
Alignment:
Q  26 gaatgccaagtaatagaaacaggatctgttttcaaaagccatgaatcaccaacaactccaacaagttcaccatcaatgcttttatacttaaaatcactca 125  Q
    |||| |||||||||||||||| |||| |||||||||| ||| |||||| ||||||  |||||||| || |||||||||||||||||||| ||||||||||    
T  6528518 gaataccaagtaatagaaacatgatcagttttcaaaatccacgaatcagcaacaatgccaacaagatcgccatcaatgcttttatacttgaaatcactca 6528617  T
Q  126 aaaaggtagca---ttggaatcacttttagacataagctggagatgaagagggtgtgctaacatcagtaaatcacctgaacctttcttctc 213  Q
    |||  |||  |   ||  ||||  | | ||| | |||||| |||||||||||||||||||||||||  ||||||||  |||| ||||||||    
T  6528618 aaacagtaatattcttacaatctttctcagataaaagctgaagatgaagagggtgtgctaacatcaacaaatcaccccaacccttcttctc 6528708  T

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Target: chr6; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 42 - 121
Target Start/End: Original strand, 6497008 - 6497087
Alignment:
Q  42 aaacaggatctgttttcaaaagccatgaatcaccaacaactccaacaagttcaccatcaatgcttttatacttaaaatca 121  Q
    |||||||||| |||| |||||||||||||||||||||||| |||||||| || ||||||||||||| |||||||||||||    
T  6497008 aaacaggatcagtttccaaaagccatgaatcaccaacaacaccaacaaggtctccatcaatgctttgatacttaaaatca 6497087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 43 - 121
Target Start/End: Complemental strand, 6461663 - 6461585
Alignment:
Q  43 aacaggatctgttttcaaaagccatgaatcaccaacaactccaacaagttcaccatcaatgcttttatacttaaaatca 121  Q
    ||||||||| |||| |||||||||||||||||||||||| |||||||| || ||||||||||||| |||||||||||||    
T  6461663 aacaggatcagtttccaaaagccatgaatcaccaacaacaccaacaaggtctccatcaatgctttgatacttaaaatca 6461585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 121
Target Start/End: Original strand, 6457672 - 6457790
Alignment:
Q  3 attcttcttttacacctttgctcgaatgccaagtaatagaaacaggatctgttttcaaaagccatgaatcaccaacaactccaacaagttcaccatcaat 102  Q
    ||||||| || | ||||||| | |||||||| |||| |||||||||||  |||||||| | |||||| || |||||||| |||||||| || || |||||    
T  6457672 attcttcattgatacctttggtggaatgccatgtaacagaaacaggatgagttttcaataaccatgagtctccaacaacaccaacaagctcgccgtcaat 6457771  T
Q  103 gcttttatacttaaaatca 121  Q
    ||||| |||||| ||||||    
T  6457772 gctttgatacttcaaatca 6457790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 1822163 - 1822092
Alignment:
Q  2 gattcttcttttacacctttgctcgaatgccaagtaatagaaacaggatctgttttcaaaagccatgaatca 73  Q
    ||||||| ||| ||||||||||| ||||||||||| |  |||||||||||  ||||||||||||||||||||    
T  1822163 gattcttgtttaacacctttgcttgaatgccaagttacggaaacaggatcgattttcaaaagccatgaatca 1822092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 2 - 128
Target Start/End: Complemental strand, 1838900 - 1838775
Alignment:
Q  2 gattcttcttttacacctttgctcgaatgccaagtaatagaaacaggatctgttttcaaaagccatgaatcaccaacaactccaacaagttcaccatcaa 101  Q
    |||||||| |||||||  || || ||||||||||  | ||||||| |||| |||||||||| |||||||| ||||||| | || ||| | || | |||||    
T  1838900 gattcttcatttacacaatttcttgaatgccaagatacagaaacatgatcggttttcaaaatccatgaat-accaacagcaccgacaggctctcgatcaa 1838802  T
Q  102 tgcttttatacttaaaatcactcaaaa 128  Q
     |||||||||||| |||| ||||||||    
T  1838801 agcttttatacttgaaataactcaaaa 1838775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 6526679 - 6526732
Alignment:
Q  14 acacctttgctcgaatgccaagtaatagaaacaggatctgttttcaaaagccat 67  Q
    ||||||||||| ||||||||||| | ||||||| ||||||||||||||| ||||    
T  6526679 acacctttgcttgaatgccaagttacagaaacaagatctgttttcaaaatccat 6526732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 174
Target Start/End: Original strand, 6526737 - 6526816
Alignment:
Q  95 ccatcaatgcttttatacttaaaatcactcaaaaaggtagcattggaatcacttttagacataagctggagatgaagagg 174  Q
    |||||||||| |||||||||||||||||||||||  ||| ||||  ||||  | ||||||| |||||| ||||| |||||    
T  6526737 ccatcaatgcgtttatacttaaaatcactcaaaacagtaacattacaatctttcttagacaaaagctgcagatggagagg 6526816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 35231274 - 35231196
Alignment:
Q  53 gttttcaaaagccatgaatcac---caacaactccaacaagttcaccatcaatgcttttatacttaaaatcactcaaaa 128  Q
    |||||||||||||||| |||||   ||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||    
T  35231274 gttttcaaaagccatggatcacaaccaacaacaccaacaagttcactatcaatgcttttatacttaaaatcattcaaaa 35231196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 121
Target Start/End: Original strand, 4046568 - 4046646
Alignment:
Q  43 aacaggatctgttttcaaaagccatgaatcaccaacaactccaacaagttcaccatcaatgcttttatacttaaaatca 121  Q
    ||||| ||| |||||||||  ||||||||  |||||||| |||||||| ||||||||||  ||||||||||||||||||    
T  4046568 aacagaatcagttttcaaattccatgaatttccaacaacaccaacaagatcaccatcaacacttttatacttaaaatca 4046646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 118
Target Start/End: Complemental strand, 9665102 - 9665067
Alignment:
Q  83 ccaacaagttcaccatcaatgcttttatacttaaaa 118  Q
    |||||||| |||||||||||||||||||||||||||    
T  9665102 ccaacaagatcaccatcaatgcttttatacttaaaa 9665067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 213
Target Start/End: Original strand, 49569685 - 49569803
Alignment:
Q  98 tcaatgcttttatacttaaaatcactcaaaaaggtagcattggaatcacttttagacataagctggagatgaagagggt---gtgctaacatcagtaaat 194  Q
    |||||||||||||||||||||| |||| |||  ||| ||||||||||  ||| |||   |||||| ||||||||||| |    |||||||||  ||||||    
T  49569685 tcaatgcttttatacttaaaattactccaaacagtaacattggaatctttttaagaataaagctgaagatgaagaggatatgttgctaacattggtaaat 49569784  T
Q  195 cacctgaacctttcttctc 213  Q
    ||  |||||||||||||||    
T  49569785 cagttgaacctttcttctc 49569803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 118
Target Start/End: Complemental strand, 13536126 - 13536091
Alignment:
Q  83 ccaacaagttcaccatcaatgcttttatacttaaaa 118  Q
    |||||||| |||||||||||||||||||||||||||    
T  13536126 ccaacaagatcaccatcaatgcttttatacttaaaa 13536091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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