View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18636_low_6 (Length: 498)
Name: NF18636_low_6
Description: NF18636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18636_low_6 |
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| [»] scaffold0171 (3 HSPs) |
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| [»] scaffold0181 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 18 - 486
Target Start/End: Complemental strand, 36735721 - 36735253
Alignment:
| Q |
18 |
atgatttatgaataccacaaagcaacaagaggactaaaaatataaattttcaatatgaagttgcannnnnnnncctcccctaaacatgatcaaaatcaca |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
36735721 |
atgatttatgaataccacaaagcaacaagaggactaaaaatataaattttcaatatgaagttgcattttttttcctcccctaaacatgatcaaaatcaca |
36735622 |
T |
|
| Q |
118 |
tagaaggaaaaggattaaatctaggcacagggacacaaattaaaggatgagcccttgaaagggtcaacccaggtttctcttccatattaacaatcccatt |
217 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36735621 |
tagaaggaaaatgattaaatctaggcacagggacacaaattaaaggatgagcccttgaaagggtcaacccaggtttctcttccatattaacaatcccatt |
36735522 |
T |
|
| Q |
218 |
accacctttaaccttccattcaaaacattgaatcatagcagcaagatttgtttgcacaacatgcaaagccaatgatgttccagggcatgctcttcttcca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36735521 |
accacctttaaccttccattcaaaacattgaatcatagcagcaagatttgtttgcacaacatgcaaagccaatgatgttccagggcatgctcttcttcca |
36735422 |
T |
|
| Q |
318 |
ctcccaaatggaatcaaatgaaaatgttgacccctcacatctaaatttccaacttcattaataaacctttctggcctaaactcaagtggattatcccaat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36735421 |
ctcccaaatggaatcaaatgaaaatgttgacccctcacatctaaatttccaacttcattaataaacctttctggcctaaactcaagtggattatcccaat |
36735322 |
T |
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| Q |
418 |
aattagggtcccttccaatagaccatatattaacaaacaattgtgtctttgctggtatctcatagcctt |
486 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36735321 |
aattagggtcccttccaatagaccatatattaacaaacaattgtgtctttgctggtatctcatagcctt |
36735253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 141 - 268
Target Start/End: Complemental strand, 25169723 - 25169599
Alignment:
| Q |
141 |
ggcacagggacacaaattaaaggatgagcccttgaaagggtcaacccaggtttctcttccatattaacaatcccattaccacctttaaccttccattcaa |
240 |
Q |
| |
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|||||||| |||||||| |||||||||||||||| |||||||| | |||||||||||||| | ||| ||||||||||| | ||| |||||||||| |
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| T |
25169723 |
ggcacaggaacacaaatcaaaggatgagcccttggaagggtcacggccggtttctcttccatgtcaactttcccattacca---tcaacattccattcaa |
25169627 |
T |
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| Q |
241 |
aacattgaatcatagcagcaagatttgt |
268 |
Q |
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|||| |||||||| |||||||||||||| |
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| T |
25169626 |
aacactgaatcattgcagcaagatttgt |
25169599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 141 - 268
Target Start/End: Complemental strand, 24941287 - 24941163
Alignment:
| Q |
141 |
ggcacagggacacaaattaaaggatgagcccttgaaagggtcaacccaggtttctcttccatattaacaatcccattaccacctttaaccttccattcaa |
240 |
Q |
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|||||||| |||||||| |||||||||||||||| |||||| | | | |||||||||||| ||||| ||||||||||| | ||| |||||||||| |
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| T |
24941287 |
ggcacaggaacacaaatcaaaggatgagcccttggaagggttacagcggatttctcttccatgttaactttcccattaccatc---aacattccattcaa |
24941191 |
T |
|
| Q |
241 |
aacattgaatcatagcagcaagatttgt |
268 |
Q |
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|||| |||||||| |||||||||||||| |
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| T |
24941190 |
aacactgaatcattgcagcaagatttgt |
24941163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 415
Target Start/End: Original strand, 38807637 - 38807755
Alignment:
| Q |
297 |
ccagggcatgctcttcttccactcccaaatggaatcaaatgaaaatgttgacccctcacatctaaatttccaacttcattaat-aaacctttctggccta |
395 |
Q |
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|||||||| |||||||||||| | |||||||| || || || |||| ||| |||||||||||||| || |||||| | || |||||| || |||||| |
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| T |
38807637 |
ccagggcaagctcttcttccagttccaaatggtataaattggaaattttgtcccctcacatctaacttattcacttcactcataaaacctctc-ggccta |
38807735 |
T |
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| Q |
396 |
aactcaagtggattatccca |
415 |
Q |
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|||||||||||||| ||||| |
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| T |
38807736 |
aactcaagtggattctccca |
38807755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 146 - 415
Target Start/End: Complemental strand, 25914 - 25648
Alignment:
| Q |
146 |
agggacacaaattaaaggatgagcccttgaaagggtcaacccaggtttctcttccatattaacaatcccattaccacctttaaccttccattcaaaacat |
245 |
Q |
| |
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||||||||| || |||||||||||||||| ||||||| | || |||||||||||| |||| | ||||||||||| ||||||| |||||||||| |
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| T |
25914 |
agggacacacatcaaaggatgagcccttggaagggtcgtcgaagctttctcttccatgctaactgttccattaccacc---aaccttcaattcaaaacac |
25818 |
T |
|
| Q |
246 |
tgaatcatagcagcaagatttgtttgcacaacatgcaaagccaatgatgttccagggcatgctcttcttccactcccaaatggaatcaaatgaaaatgtt |
345 |
Q |
| |
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||||| |||||||||||||||||| | ||||| || | || ||||| || ||||| || |||||||||||| |||||||| || || || |||| || |
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| T |
25817 |
tgaataatagcagcaagatttgttggaacaacttgaagcgcgaatgaggtaccaggacaagctcttcttccaaatccaaatggtataaattggaaatttt |
25718 |
T |
|
| Q |
346 |
gacccctcacatctaaatttccaacttcattaataaacctttctggcctaaactcaagtggattatccca |
415 |
Q |
| |
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| ||||| | ||| || || ||||| | |||||||| ||||| |||||||||||||||| ||||| |
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| T |
25717 |
gtccccttagatcaaacttattcccttcactcataaacctctctggtttaaactcaagtggattttccca |
25648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 146 - 269
Target Start/End: Complemental strand, 12279 - 12159
Alignment:
| Q |
146 |
agggacacaaattaaaggatgagcccttgaaagggtcaacccaggtttctcttccatattaacaatcccattaccacctttaaccttccattcaaaacat |
245 |
Q |
| |
|
||||||||| || |||||||||||||||| |||||| ||||||||||||||| ||||| | |||| |||||| ||| |||||||||||||| |
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| T |
12279 |
agggacacatatcaaaggatgagcccttggaagggtggttgaaggtttctcttccatgttaactgttccatcaccacc---aactttccattcaaaacac |
12183 |
T |
|
| Q |
246 |
tgaatcatagcagcaagatttgtt |
269 |
Q |
| |
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|||||||| ||||||||||||||| |
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| T |
12182 |
tgaatcattgcagcaagatttgtt |
12159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 147 - 268
Target Start/End: Complemental strand, 20064 - 19946
Alignment:
| Q |
147 |
gggacacaaattaaaggatgagcccttgaaagggtcaacccaggtttctcttccatattaacaatcccattaccacctttaaccttccattcaaaacatt |
246 |
Q |
| |
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||||||||||| |||||||||||||||| |||| || | | |||||| ||||| ||||| | ||||||||||| |||||||||||||||||| | |
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| T |
20064 |
gggacacaaatcaaaggatgagcccttggaaggctcgtggccgctttctcatccatgttaacttttccattaccacc---aaccttccattcaaaacact |
19968 |
T |
|
| Q |
247 |
gaatcatagcagcaagatttgt |
268 |
Q |
| |
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||||||| || ||||||||||| |
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| T |
19967 |
gaatcattgcggcaagatttgt |
19946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 146 - 269
Target Start/End: Original strand, 9568 - 9688
Alignment:
| Q |
146 |
agggacacaaattaaaggatgagcccttgaaagggtcaacccaggtttctcttccatattaacaatcccattaccacctttaaccttccattcaaaacat |
245 |
Q |
| |
|
||||||||| || |||||||||||||| | ||||||||| | |||||||||||||| ||||| | |||| ||||| |||||||||| | ||||||| |
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| T |
9568 |
agggacacacatcaaaggatgagccctaggaagggtcaaagctggtttctcttccatgttaactgttccatcaccac---taaccttccaataaaaacat |
9664 |
T |
|
| Q |
246 |
tgaatcatagcagcaagatttgtt |
269 |
Q |
| |
|
|||||||| ||||||||||||||| |
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| T |
9665 |
tgaatcattgcagcaagatttgtt |
9688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 369 - 472
Target Start/End: Original strand, 6026839 - 6026942
Alignment:
| Q |
369 |
acttcattaataaacctttctggcctaaactcaagtggattatcccaataattagggtcccttccaatagaccatatattaacaaacaattgtgtctttg |
468 |
Q |
| |
|
|||||||| ||||||||| ||| ||||||||||||||| ||||||||||| | ||| || ||||| | ||||| |||||||||||| |||||||| |
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| T |
6026839 |
acttcatttataaaccttagtggttgaaactcaagtggattttcccaataatttgagtctctaccaattgcccataaattaacaaacaaagttgtctttg |
6026938 |
T |
|
| Q |
469 |
ctgg |
472 |
Q |
| |
|
|||| |
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|
| T |
6026939 |
ctgg |
6026942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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