View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18636_low_7 (Length: 477)
Name: NF18636_low_7
Description: NF18636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18636_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 4 - 462
Target Start/End: Original strand, 49320992 - 49321447
Alignment:
| Q |
4 |
ctgtcttgttccccaaatctggattataaacattgcatttctattgttcttgggatcaggggaatgatagtattattttaaaaagatcaaacagagtagt |
103 |
Q |
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| T |
49320992 |
ctgtcttgttctccaaatctggattataaacattgcatttctattgttcttgggatcaggggaatgatagtattattggaaaaagatcaaacagagtagt |
49321091 |
T |
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| Q |
104 |
caattctc----actataaggtaaaaagaatatcgtaggagtacatcgataaacttacagacattgccatttgtttttcattgcagaaaatgttc--tat |
197 |
Q |
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|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
49321092 |
gaattctttctgactataaggtaaaaagaatattgtaggagtacatcgataaacttacagacattgccatttgtttttcattgcagaaaatgttctatat |
49321191 |
T |
|
| Q |
198 |
atattatctgagaagcaaagagtattaatgtgcattttattgatgctaaaatttatgcaannnnnnnatgcatatagccttcagtctctacatttcattt |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||| |
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| T |
49321192 |
atattatctgagaagcaaagagtattaatgtgcattttattgatgctaaaatttatgcaattt---------ttttgccttcagtctctacatttcattt |
49321282 |
T |
|
| Q |
298 |
ttgcaagttttatcacttttaatgttcctactttcacacatgtagacatactttataaacttgtactgtattattctattctttatctgcattttccatt |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49321283 |
ttgcaagttttatcacttttaatgttcctactttcacacatatagacatactttataaacttgtactgtattattctattctttatctgcattttccatt |
49321382 |
T |
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| Q |
398 |
atcttgagaaacttttgacattttatccatatgtgccacttagtatcttacttactgctgatttt |
462 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||| |
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| T |
49321383 |
atcttgagaaacttttgacattttatccatctgtgccacttactatcttacttactgctaatttt |
49321447 |
T |
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