View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18637_high_15 (Length: 268)
Name: NF18637_high_15
Description: NF18637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18637_high_15 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 20 - 268
Target Start/End: Original strand, 39190322 - 39190570
Alignment:
| Q |
20 |
ttggcctgatgaactaggcaaagcatcctagagatgcctggatatcgtcgatcattttgcatgcattttatttcgaaaaggttctcaatttctcatacca |
119 |
Q |
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| T |
39190322 |
ttggcctgatgaactaggcaaagcatcctagagatgcctggatatcgtcgatcattttgcatgcattttatttcgaaaaggttctcaatttctcatacca |
39190421 |
T |
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| Q |
120 |
ataccacacatcgtgtgttaatatatatacacatttgtcgagtataaccatcccaatgaacaatgaattatcacctatcaaagttattaaggatagctac |
219 |
Q |
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| T |
39190422 |
ataccacacatcgtgtgttaatatatatacacacttgtcgagtataaccatcccaatgaacaatgaattatcacctatcaaagttattaaggatagctac |
39190521 |
T |
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| Q |
220 |
gtcactttagcacatgtgattatttacctttttacacatctgtctttat |
268 |
Q |
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| T |
39190522 |
gtcactttagcacatgtgattatttacctttttacacatctgtctttat |
39190570 |
T |
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