View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18637_high_18 (Length: 250)
Name: NF18637_high_18
Description: NF18637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18637_high_18 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 54979858 - 54980093
Alignment:
| Q |
11 |
taattcttgaaacttgtagtatgataaacatgagacttaccattgctttgagctctgcgccctttaggcttttcactaaatgaaaggatcctctatttat |
110 |
Q |
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| T |
54979858 |
taattcttgaaacttgtagtatgataaacatgagacttaccattgctttgagctctgcgccctttaggcttttcactaaatgaaaggatcctctatttat |
54979957 |
T |
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| Q |
111 |
tgtcaaccttcattaggccaaaatctgaggtgcagctatagtggttgaataaaacattagttatgatgccaatttgataaggctaaatattagacatgtt |
210 |
Q |
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| T |
54979958 |
tgtcaatcttcattaggccaaaatctgaggtgcagctatagtggttgcataaaacattagttatgatgtcaatttgataaggctaaatattagacatgtt |
54980057 |
T |
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| Q |
211 |
ttgaatgccaaatgaggaggccggctcatcagtatgtaaa |
250 |
Q |
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| T |
54980058 |
ttgaatgccaaatgagga----ggctcatcagtatgtaaa |
54980093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 28 - 150
Target Start/End: Original strand, 54971476 - 54971597
Alignment:
| Q |
28 |
agtatgataaacatgagacttaccattgctttgagctctgcgccctttaggcttttcactaaatgaaaggatcctctatttattgtcaaccttcattagg |
127 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||| |||| ||||||||| |
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| T |
54971476 |
agtatgataaacatgagacttaccattgctttgagctctgctcc-tttaggcttttcactaaatgaaaggatccttcctttatcatcaatcttcattaga |
54971574 |
T |
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| Q |
128 |
ccaaaatctgaggtgcagctata |
150 |
Q |
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| T |
54971575 |
ccaaaatctgaggcgcggctata |
54971597 |
T |
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