View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18637_high_19 (Length: 238)
Name: NF18637_high_19
Description: NF18637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18637_high_19 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 29041274 - 29041496
Alignment:
| Q |
16 |
caaatctcataagatttgaaccaaaaatacctgcagaagctattgaggtttgtactgaaaatgtggcatgttcaatggatggtatatggagggaatttat |
115 |
Q |
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| T |
29041274 |
caaatctcataagatttgaaccaaaaatacctgcagaagctattgaggtttgtactgaaaatgtggcatgttcaatggatggtatatggagggaatttat |
29041373 |
T |
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| Q |
116 |
ggttgagtccatggttaagtcaccaagtgacacacctccatgtgcaacgttttctccttattttatttatgatgatgtcaaataagctatgaaaggtatt |
215 |
Q |
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| T |
29041374 |
ggttgagtccatggttaagtcaccaagtgacacacctccatgtgcaatgttttctccttattttatttatgatgatgtcaaataagctatgaaaggtatt |
29041473 |
T |
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| Q |
216 |
atattttatgaacagattatatt |
238 |
Q |
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| T |
29041474 |
atattttatgaacagattatatt |
29041496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 16 - 178
Target Start/End: Original strand, 29019581 - 29019743
Alignment:
| Q |
16 |
caaatctcataagatttgaaccaaaaatacctgcagaagctattgaggtttgtactgaaaatgtggcatgttcaatggatggtatatggagggaatttat |
115 |
Q |
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|||| ||||| ||||||||| ||| |||||||||| ||| ||||||||||| ||||||| |||||||| |||||| ||||||||||||||| ||||| |
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| T |
29019581 |
caaagctcatgagatttgaagcaaccatacctgcaggagcagttgaggtttgttctgaaaacttggcatgtccaatgggtggtatatggagggagtttat |
29019680 |
T |
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| Q |
116 |
ggttgagtccatggttaagtcaccaagtgacacacctccatgtgcaacgttttctccttattt |
178 |
Q |
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| T |
29019681 |
ggttgagtccatggttaagtcaccaagtgatacacttccatgtactatgttttctccttattt |
29019743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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