View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18637_high_20 (Length: 219)
Name: NF18637_high_20
Description: NF18637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18637_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 612232 - 612418
Alignment:
| Q |
18 |
tactatagaatggttctctttactatatgcctgaatcatgaatgtttgatatataccagctcattgatttatccagtttctttatgcatgcaactttggt |
117 |
Q |
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| T |
612232 |
tactatagaatggttctctttactatatgcctgaatcatgaatgtttgatatataccagctcattgatttatccggtttctttatgtatgcaactttggt |
612331 |
T |
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| Q |
118 |
cttttttcttataattgtgtcgagtatc---ctaatggccagatatcacacattttaaatatagaaaaacagggtgtttgaggttcg |
201 |
Q |
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| T |
612332 |
cttgtttcttataattctgtcaagtatccttctaatggtcagagatcacacattttaaatatagaaaaacagggtgtttgaggttcg |
612418 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 201
Target Start/End: Original strand, 3350759 - 3350801
Alignment:
| Q |
159 |
atcacacattttaaatatagaaaaacagggtgtttgaggttcg |
201 |
Q |
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| T |
3350759 |
atcacacattttaaatgtagaaaaatagggtgtttggggttcg |
3350801 |
T |
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