View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18637_high_3 (Length: 445)
Name: NF18637_high_3
Description: NF18637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18637_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 10 - 429
Target Start/End: Complemental strand, 1941199 - 1940780
Alignment:
| Q |
10 |
ttattctactgtaaaaaacaaaacactatataataatccttaaaccttggtttctccgtctttcttggagaaaacctattccatgttgtttaccaacatt |
109 |
Q |
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| T |
1941199 |
ttattctactgtaaaaaacaaaacactatataataatccttaaaccttggtttctccgtctttcttggagaaaacctattccatgttgtttaccaacatt |
1941100 |
T |
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| Q |
110 |
actaactttatcnnnnnnnnnnnnnnntctttataatttttgattaattaatcaattaattaatgaattgatcacaattaccaactatgtttataactct |
209 |
Q |
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| T |
1941099 |
actaactttatccacacacacacacactctttataatttttgattaattaatcaattaattaatgaattgatcacaattaccaactatgtttataactct |
1941000 |
T |
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| Q |
210 |
ttcattcatttcactattttcatttgagttcttcaatggcaattccttcttcaatctctgatccatttgcttcaaagtttctacctttatcttcttccag |
309 |
Q |
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| T |
1940999 |
ttcattcatttcactattttcatttgagttcttcaatggcaattccttcttcaatctctgatccatttgcttcaaagtttctacctttatcttcttccag |
1940900 |
T |
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| Q |
310 |
ttataacccatcaagggtatgcattcattcctctgtttttactctgttttcttatttttgtgttaatgagctaattaaagtgacattgttgtgacagatc |
409 |
Q |
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| T |
1940899 |
ttataacccatcaagggtatgcattcattcctctgtttttactctgttttcttatttttgtgttaatgagctaattgaagtgacattgttgtgacagatc |
1940800 |
T |
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| Q |
410 |
tctgttcctgcgcaaattac |
429 |
Q |
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| T |
1940799 |
tctgttcctgcgcaaattac |
1940780 |
T |
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