View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18637_high_6 (Length: 412)
Name: NF18637_high_6
Description: NF18637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18637_high_6 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 18 - 402
Target Start/End: Complemental strand, 47347750 - 47347366
Alignment:
| Q |
18 |
attcttggtgtttctgaatcccacaaacccatgctctttagccttattcatgctatctacagccccttcccctccaaacataagatccacaaaccaccat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47347750 |
attcttggtgtttctgaatcccacaaacccatgctctttagccttattcatgctatctacagccccttcccctccaaacataagatccacaaaccaccat |
47347651 |
T |
|
| Q |
118 |
tcaccaacctcatcaatcttcgtagcttcgagctgattctccttcacaatctcatcccaaacaggacccttatccttcatcaactccgacaacttcaaac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47347650 |
tcaccaacctcatcaatcttcgtagcttcgagttgattctccttcacaatctcatcccaaacaggacccttatccttcatcaactccgacaacttcaaac |
47347551 |
T |
|
| Q |
218 |
gaggaccttcctcgtcaaacccatactcctcaatcccaaactgttccgccaaaaccttccatagttgtttccatctaaaaacatcaccattgctacaatt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
47347550 |
gaggaccttcctcgtcaaacccatactcctcaatcccaaactgttccgccaaaaccttccatagttgtttccatctaaaaacatcaccattgctacagtt |
47347451 |
T |
|
| Q |
318 |
aaaagcttcgttcttagcataaggatccactgcggcccaaatatgttgctctgcaatcaaatccgcatcagaaaccacagaataa |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
47347450 |
aaaagcttcgttcttagcataaggatccactgcggcccaaatatgttgctctgcaatcaaatccgcatcagaagccacagaataa |
47347366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 153 - 390
Target Start/End: Complemental strand, 47339145 - 47338908
Alignment:
| Q |
153 |
attctccttcacaatctcatcccaaacaggacccttatccttcatcaactccgacaacttcaaacgaggaccttcctcgtcaaacccatactcctcaatc |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
47339145 |
attctccttcacaatctcatcccaaacaggacccttatccttcatcaactccgttaacttcaaacgaggaccttcctcgtcgaacccatactcctcaatc |
47339046 |
T |
|
| Q |
253 |
ccaaactgttccgccaaaaccttccatagttgtttccatctaaaaacatcaccattgctacaattaaaagcttcgttcttagcataaggatccactgcgg |
352 |
Q |
| |
|
||||| |||||||| | ||||||||| | ||| ||||| ||||||||||||||||| |||||||| || ||||| ||||||||||||||||||||||| | |
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| T |
47339045 |
ccaaattgttccgcgataaccttccacaattgcttccacctaaaaacatcaccattactacaattgaatgcttcattcttagcataaggatccactgcag |
47338946 |
T |
|
| Q |
353 |
cccaaatatgttgctctgcaatcaaatccgcatcagaa |
390 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||| |
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|
| T |
47338945 |
cccaaatatgttgctcagcaatcaaatcagcatcagaa |
47338908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 153 - 390
Target Start/End: Original strand, 3818732 - 3818969
Alignment:
| Q |
153 |
attctccttcacaatctcatcccaaacaggacccttatccttcatcaactccgacaacttcaaacgaggaccttcctcgtcaaacccatactcctcaatc |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
3818732 |
attctccttcacaatctcatcccaaacaggacccttatccttcatcaactccgttaacttcaaacgaggaccttcctcgtcgaacccatactcctcaatc |
3818831 |
T |
|
| Q |
253 |
ccaaactgttccgccaaaaccttccatagttgtttccatctaaaaacatcaccattgctacaattaaaagcttcgttcttagcataaggatccactgcgg |
352 |
Q |
| |
|
||||| |||||||| | ||||||||| | ||| ||||| ||||||||||||||||| |||||||| || ||||| ||||||||||||||||||||||| | |
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|
| T |
3818832 |
ccaaattgttccgcgataaccttccacaattgcttccacctaaaaacatcaccattactacaattgaatgcttcattcttagcataaggatccactgcag |
3818931 |
T |
|
| Q |
353 |
cccaaatatgttgctctgcaatcaaatccgcatcagaa |
390 |
Q |
| |
|
||||||||||||| || ||||||||||| ||||||||| |
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|
| T |
3818932 |
cccaaatatgttgttcagcaatcaaatctgcatcagaa |
3818969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 18 - 386
Target Start/End: Complemental strand, 47350286 - 47349921
Alignment:
| Q |
18 |
attcttggtgtttctgaatcccacaaacccatgctctttagccttattcatgctatctacagccccttcccctccaaacataagatccacaaaccaccat |
117 |
Q |
| |
|
||||||| | ||||||||||||| ||||||||||||||| ||||| ||||||||||||||| ||||| |||||| || |||| ||| |||||| |
|
|
| T |
47350286 |
attcttgctatttctgaatcccaaaaacccatgctctttcgccttgttcatgctatctacaatgtcttccattccaaaagtagcatccgcaacccaccac |
47350187 |
T |
|
| Q |
118 |
tcaccaacctcatcaatcttcgtagcttcgagctgattctccttcacaatctcatcccaaacaggacccttatccttcatcaactccgacaacttcaaac |
217 |
Q |
| |
|
||| |||| || || | |||||||| || |||| |||||||||||||||||||||||||| ||||||||||||||||||| ||| | |||| | |||| |
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|
| T |
47350186 |
tcagcaacttcttccaacttcgtaggttgaagctcgttctccttcacaatctcatcccaaactggacccttatccttcatcatctcagccaaccttaaac |
47350087 |
T |
|
| Q |
218 |
gaggaccttcctcgtcaaacccatactcctcaatcccaaactgttccgccaaaaccttccatagttgtttccatctaaaaacatcaccattgctacaatt |
317 |
Q |
| |
|
||||||| ||||||| | ||||||||||||||| |||| ||||||| |||||||||||| | ||||||||| |||||||||||||||||||||||||| |
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|
| T |
47350086 |
gaggaccgtcctcgt---atccatactcctcaatctcaaattgttccgtcaaaaccttccacaattgtttccacctaaaaacatcaccattgctacaatt |
47349990 |
T |
|
| Q |
318 |
aaaagcttcgttcttagcataaggatccactgcggcccaaatatgttgctctgcaatcaaatccgcatc |
386 |
Q |
| |
|
|| ||||| ||||||||||||| ||||||||| |||||||| |||||||||||||||||||| ||||| |
|
|
| T |
47349989 |
gaacgcttcattcttagcataagtatccactgcagcccaaatgtgttgctctgcaatcaaatctgcatc |
47349921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 153 - 365
Target Start/End: Original strand, 5390872 - 5391081
Alignment:
| Q |
153 |
attctccttcacaatctcatcccaaacaggacccttatccttcatcaactccgacaacttcaaacgaggaccttcctcgtcaaacccatactcctcaatc |
252 |
Q |
| |
|
||||||| |||||||||| ||||| ||| |||||||||||||||||| ||||| ||| |||| | |||| |||| ||||| ||||| || || ||| |
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|
| T |
5390872 |
attctccctcacaatctcttcccacacaccacccttatccttcatcaaatccgataacctcaa-ctccgacc--cctcctcaaatccataatcatcgatc |
5390968 |
T |
|
| Q |
253 |
ccaaactgttccgccaaaaccttccatagttgtttccatctaaaaacatcaccattgctacaattaaaagcttcgttcttagcataaggatccactgcgg |
352 |
Q |
| |
|
||||| |||| || || |||||||| | |||||||| || |||||||| |||||||| || || || ||||| ||||| |||| |||||||||||| |
|
|
| T |
5390969 |
tcaaaccgttctgctaacaccttccacaaatgtttccacctgaaaacatcgccattgctgcagttgaatgcttcattctttgcattaggatccactgcac |
5391068 |
T |
|
| Q |
353 |
cccaaatatgttg |
365 |
Q |
| |
|
||||||||||||| |
|
|
| T |
5391069 |
cccaaatatgttg |
5391081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 153 - 365
Target Start/End: Original strand, 5399591 - 5399800
Alignment:
| Q |
153 |
attctccttcacaatctcatcccaaacaggacccttatccttcatcaactccgacaacttcaaacgaggaccttcctcgtcaaacccatactcctcaatc |
252 |
Q |
| |
|
||||||| |||||||||| ||||| ||| |||||||||||||||||| ||||| ||| |||| | |||| |||| ||||| ||||| || || ||| |
|
|
| T |
5399591 |
attctccctcacaatctcttcccacacaccacccttatccttcatcaaatccgataacctcaa-ctccgacc--cctcctcaaatccataatcatcgatc |
5399687 |
T |
|
| Q |
253 |
ccaaactgttccgccaaaaccttccatagttgtttccatctaaaaacatcaccattgctacaattaaaagcttcgttcttagcataaggatccactgcgg |
352 |
Q |
| |
|
||||| |||| || || |||||||| | |||||||| || |||||||| |||||||| || || || ||||| ||||| |||| |||||||||||| |
|
|
| T |
5399688 |
tcaaaccgttctgctaacaccttccacaaatgtttccacctgaaaacatcgccattgctgcagttgaatgcttcattctttgcattaggatccactgcac |
5399787 |
T |
|
| Q |
353 |
cccaaatatgttg |
365 |
Q |
| |
|
||||||||||||| |
|
|
| T |
5399788 |
cccaaatatgttg |
5399800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 153 - 365
Target Start/End: Original strand, 5394410 - 5394619
Alignment:
| Q |
153 |
attctccttcacaatctcatcccaaacaggacccttatccttcatcaactccgacaacttcaaacgaggaccttcctcgtcaaacccatactcctcaatc |
252 |
Q |
| |
|
||||||| |||||||||| ||||| ||| |||||||||||||||||| ||||| ||| || ||| |||| |||| ||||| ||||| || || ||| |
|
|
| T |
5394410 |
attctccctcacaatctcttcccacacaccacccttatccttcatcaaatccgataacctc-aactccgacc--cctcctcaaatccataatcatcgatc |
5394506 |
T |
|
| Q |
253 |
ccaaactgttccgccaaaaccttccatagttgtttccatctaaaaacatcaccattgctacaattaaaagcttcgttcttagcataaggatccactgcgg |
352 |
Q |
| |
|
||||| |||| || || |||||||| | |||||||| | |||||||||||||| || ||||| || ||||| ||||| || | ||||||| |||| |
|
|
| T |
5394507 |
tcaaaccgttctgctaacaccttccacaaatgtttccacttgaaaacatcaccattactgcaattgaatgcttcattctttgcgttaggatccgctgcac |
5394606 |
T |
|
| Q |
353 |
cccaaatatgttg |
365 |
Q |
| |
|
||||||||||||| |
|
|
| T |
5394607 |
cccaaatatgttg |
5394619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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