View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18637_low_1 (Length: 677)

Name: NF18637_low_1
Description: NF18637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18637_low_1
NF18637_low_1
[»] chr7 (3 HSPs)
chr7 (326-660)||(27776440-27776790)
chr7 (17-220)||(27776866-27777069)
chr7 (84-148)||(19741093-19741157)
[»] chr5 (2 HSPs)
chr5 (97-148)||(41218921-41218972)
chr5 (85-149)||(26472136-26472200)
[»] scaffold0164 (1 HSPs)
scaffold0164 (85-147)||(27146-27208)
[»] chr8 (1 HSPs)
chr8 (85-147)||(15193146-15193208)
[»] chr4 (5 HSPs)
chr4 (85-147)||(18254024-18254086)
chr4 (84-148)||(51764235-51764299)
chr4 (93-146)||(22643579-22643632)
chr4 (85-149)||(22176935-22176999)
chr4 (85-149)||(23167441-23167505)
[»] chr3 (3 HSPs)
chr3 (85-147)||(53978164-53978226)
chr3 (85-149)||(8836233-8836297)
chr3 (85-149)||(55310168-55310232)
[»] chr1 (2 HSPs)
chr1 (85-147)||(49641073-49641135)
chr1 (85-149)||(52777903-52777967)
[»] chr2 (2 HSPs)
chr2 (84-148)||(19481630-19481694)
chr2 (84-148)||(11337765-11337829)
[»] chr6 (2 HSPs)
chr6 (84-149)||(34309881-34309946)
chr6 (109-148)||(21320833-21320870)
[»] scaffold0329 (1 HSPs)
scaffold0329 (85-149)||(11232-11296)


Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-153; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 326 - 660
Target Start/End: Complemental strand, 27776790 - 27776440
Alignment:
Q  326 aaaatatatgaattgtcattcttataagagtgtaataggggatggatggcttaatctgtaacgccatatattggaatgaggaatgtttgtacaagtatta 425  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27776790 aaaatctatgaattgtcattcttataagagtgtaataggg-atggatggcttaatctgtaacgccgtatattggaatgaggaatgtttgtacaagtatta 27776692  T
Q  426 tttgcaaaatg--------------gaactggattagattgaggaaaatcaacttcatataatccatgagccgctctagctttgccaatcatcttc---g 508  Q
    |||||||||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |    
T  27776691 tttgcaaaatgtttaaaaggaaatggaactggattagattgaggaaaatcaacttcatataatccatgagccgctctagctttgccaatcatcttcaagg 27776592  T
Q  509 tattcatttcctttacaagacaatgatcatcataaaaggaaacaaaacatggtgactgattagtaagcttaataactgaaataaggttgaaagaaaaatg 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27776591 tattcatttcctttacaagacaatgatcatcataaaaggaaacaaaacatggtgactgattagtaagcttaataactgaaataaggttgaaagaaaaatg 27776492  T
Q  609 aggaacatatataacatcaaataaagtaatagtctttgtgaggtgcatggtg 660  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27776491 aggaacatatataacatcaaataaagtaatagtctttgtgaggtgcatggtg 27776440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 27777069 - 27776866
Alignment:
Q  17 catcatgtgaaatagcataagcacaaaaagagataggaatatgataatgaaacattaaggtccttgacacattgagaatatgttgatacttcctttcaac 116  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  27777069 catcatgtgaaatagcataagaacaaaaagagataggaatctgatattgaaatattaaggtccttgacacattgagaatatgttgatgcttcctttcaac 27776970  T
Q  117 caccccattttgttggggtgtttcaacacaagaaagttaatgtaaaatacccttacttctgtaaaaaagactcaaacataaattcttcacaattgtcatc 216  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| || ||| ||||||| ||||||||||||||||||||| |||||||||||    
T  27776969 caccccattttgttggggtgtttcaacacaagaaagttaatgcaaaataccatttcttttgtaaaatagactcaaacataaattcttctcaattgtcatc 27776870  T
Q  217 agat 220  Q
    ||||    
T  27776869 agat 27776866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 19741157 - 19741093
Alignment:
Q  84 cacattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaag 148  Q
    |||||| ||||| ||||||| ||| |||||||| |||||||||||||| || || ||||||||||    
T  19741157 cacattaagaatgtgttgatgctttctttcaacaaccccattttgttgaggcgtctcaacacaag 19741093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 41218921 - 41218972
Alignment:
Q  97 tgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaag 148  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  41218921 tgttgatgcttcctttcaaccaccccattttgttggggggtttcaacacaag 41218972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 26472200 - 26472136
Alignment:
Q  85 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaaga 149  Q
    ||||| ||||||||||||| ||| ||||||||    |||||||||||||| ||||||||||||||    
T  26472200 acattaagaatatgttgatgctttctttcaactctaccattttgttggggagtttcaacacaaga 26472136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 27146 - 27208
Alignment:
Q  85 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaa 147  Q
    ||||| ||||||||||||| ||||||||||||   ||||||||||||||| ||||||||||||    
T  27146 acattaagaatatgttgatgcttcctttcaactctcccattttgttggggagtttcaacacaa 27208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 15193208 - 15193146
Alignment:
Q  85 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaa 147  Q
    ||||| ||||||||||||| ||||||||||||   ||||||||||||||| ||||||||||||    
T  15193208 acattaagaatatgttgatgcttcctttcaactctcccattttgttggggagtttcaacacaa 15193146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 18254086 - 18254024
Alignment:
Q  85 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaa 147  Q
    ||||| ||||||||||||| ||||||||||||   ||||||||||||||| ||||||||||||    
T  18254086 acattaagaatatgttgatgcttcctttcaactctcccattttgttggggagtttcaacacaa 18254024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 51764299 - 51764235
Alignment:
Q  84 cacattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaag 148  Q
    |||||||||||| ||||||| ||| |||||||| |||||||||||||| || || ||||||||||    
T  51764299 cacattgagaatgtgttgattctttctttcaacaaccccattttgttgaggcgtctcaacacaag 51764235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 22643632 - 22643579
Alignment:
Q  93 aatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacaca 146  Q
    ||||||||||| ||| |||||||||  ||||||||||||||| |||||||||||    
T  22643632 aatatgttgatgctttctttcaaccctcccattttgttggggagtttcaacaca 22643579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 22176935 - 22176999
Alignment:
Q  85 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaaga 149  Q
    ||||||||||||||||| |  |||||||| ||    |||||||||||||| ||||||||||||||    
T  22176935 acattgagaatatgttggtgtttcctttctactctaccattttgttggggagtttcaacacaaga 22176999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 23167441 - 23167505
Alignment:
Q  85 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaaga 149  Q
    ||||||||||| ||||| | ||| ||||||||   ||||||||||||||| || |||||||||||    
T  23167441 acattgagaatgtgttggtgctttctttcaactctcccattttgttggggagtctcaacacaaga 23167505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 53978226 - 53978164
Alignment:
Q  85 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaa 147  Q
    ||||| ||||||||||||| ||||||||||||   ||||||||||||||| ||||||||||||    
T  53978226 acattaagaatatgttgatgcttcctttcaactctcccattttgttggggagtttcaacacaa 53978164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 8836297 - 8836233
Alignment:
Q  85 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaaga 149  Q
    ||||| ||||||||||||| ||| ||||||||    |||||||||||||| ||||||||||||||    
T  8836297 acattaagaatatgttgatgctttctttcaactctaccattttgttggggagtttcaacacaaga 8836233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 55310232 - 55310168
Alignment:
Q  85 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaaga 149  Q
    ||||| ||||||| ||||| ||| ||||||||    |||||||||||||| ||||||||||||||    
T  55310232 acattaagaatatattgatgctttctttcaactctaccattttgttggggagtttcaacacaaga 55310168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 49641073 - 49641135
Alignment:
Q  85 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaa 147  Q
    ||||| ||||||||||||| ||||||||||||   ||||||||||||||| ||||||||||||    
T  49641073 acattaagaatatgttgatgcttcctttcaactctcccattttgttggggagtttcaacacaa 49641135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 52777967 - 52777903
Alignment:
Q  85 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaaga 149  Q
    ||||||||||||||||| |  |||||||| ||    |||||||||||||| ||||||||||||||    
T  52777967 acattgagaatatgttggtgtttcctttctactctaccattttgttggggagtttcaacacaaga 52777903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 19481694 - 19481630
Alignment:
Q  84 cacattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaag 148  Q
    |||||||||||| ||||||| ||| |||||||| |||||||||||||| || || ||||||||||    
T  19481694 cacattgagaatgtgttgatgctttctttcaacaaccccattttgttgaggcgtctcaacacaag 19481630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 11337829 - 11337765
Alignment:
Q  84 cacattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaag 148  Q
    |||||||||||| ||||||| ||| ||||||||  ||||||||||||| || || ||||||||||    
T  11337829 cacattgagaatgtgttgatgctttctttcaacagccccattttgttgaggcgtctcaacacaag 11337765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 149
Target Start/End: Complemental strand, 34309946 - 34309881
Alignment:
Q  84 cacattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaaga 149  Q
    ||||||||| |||||||||| ||||||||| || |  ||||||||||| || || |||||||||||    
T  34309946 cacattgaggatatgttgatgcttcctttctacaataccattttgttgaggagtctcaacacaaga 34309881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 109 - 148
Target Start/End: Complemental strand, 21320870 - 21320833
Alignment:
Q  109 ctttcaaccaccccattttgttggggtgtttcaacacaag 148  Q
    |||||||||||||||||||||||||  |||||||||||||    
T  21320870 ctttcaaccaccccattttgttggg--gtttcaacacaag 21320833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 11296 - 11232
Alignment:
Q  85 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaaga 149  Q
    ||||||||||||||||| |  |||||||| ||    |||||||||||||| ||||||||||||||    
T  11296 acattgagaatatgttggtgtttcctttctactctaccattttgttggggagtttcaacacaaga 11232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University