View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18637_low_11 (Length: 308)

Name: NF18637_low_11
Description: NF18637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18637_low_11
NF18637_low_11
[»] chr1 (18 HSPs)
chr1 (10-289)||(13094718-13094998)
chr1 (10-289)||(13130147-13130427)
chr1 (10-289)||(13161840-13162120)
chr1 (200-285)||(13007523-13007608)
chr1 (114-285)||(13101323-13101494)
chr1 (155-289)||(30367847-30367981)
chr1 (157-285)||(13069917-13070045)
chr1 (200-289)||(13244302-13244391)
chr1 (113-285)||(13214142-13214314)
chr1 (114-285)||(19727476-19727647)
chr1 (8-53)||(13010797-13010842)
chr1 (8-285)||(13204782-13205060)
chr1 (200-289)||(13271908-13271997)
chr1 (200-288)||(12963692-12963780)
chr1 (203-289)||(19278952-19279038)
chr1 (155-288)||(13064952-13065085)
chr1 (8-53)||(13069779-13069824)
chr1 (9-50)||(30367697-30367738)
[»] chr6 (2 HSPs)
chr6 (200-288)||(31396459-31396548)
chr6 (10-51)||(31396269-31396310)


Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 10 - 289
Target Start/End: Complemental strand, 13094998 - 13094718
Alignment:
Q  10 aagaatatcttgaccgattcttgtatgaaagtataacattttcccatggtgaagagcaaaggaagtgcagcgatgaagaaatggaccaa-gtattttagg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||| || |||||||    
T  13094998 aagaatatcttgaccgattcttgtatgaaagtataacattttcccatggtgaagagcaaagtaagtgcagctatgaagaaatgtaccaatgttttttagg 13094899  T
Q  109 catggtaaaagccctaaagaaagaaggacatggaaagggagaaatcagtgagaagcatcttagagacactgcacttactatgatatttgccggaaatggt 208  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  13094898 catggtaaaagccctaaagaatgaaggacatggaaagggagaaatcagtgagaagtatcttagagacactgcatttactatgatatttgccggaaatggt 13094799  T
Q  209 acaattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatc 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13094798 acaattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatc 13094718  T

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Target: chr1; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 10 - 289
Target Start/End: Complemental strand, 13130427 - 13130147
Alignment:
Q  10 aagaatatcttgaccgattcttgtatgaaagtataacattttcccatggtgaagagcaaaggaagtgcagcgatgaagaaatggaccaa-gtattttagg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||    
T  13130427 aagaatatcttgaccgattcttgtatgaaagtataacattttcccatggtgaagagcaaagcaagtgcagcgatgaagaaatggaccaatgttttttagg 13130328  T
Q  109 catggtaaaagccctaaagaaagaaggacatggaaagggagaaatcagtgagaagcatcttagagacactgcacttactatgatatttgccggaaatggt 208  Q
    ||||||||||||||||||||| |||||| |||||||||| ||||||||||||||| |||||||||| |||||| |||||||| | |||||||||||||||    
T  13130327 catggtaaaagccctaaagaatgaaggatatggaaagggtgaaatcagtgagaagtatcttagagatactgcatttactatgttttttgccggaaatggt 13130228  T
Q  209 acaattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatc 289  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13130227 tcaattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatc 13130147  T

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Target: chr1; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 10 - 289
Target Start/End: Complemental strand, 13162120 - 13161840
Alignment:
Q  10 aagaatatcttgaccgattcttgtatgaaagtataacattttcccatggtgaagagcaaaggaagtgcagcgatgaagaaatggaccaa-gtattttagg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||| | ||||||||||||||| || |||||||    
T  13162120 aagaatatcttgaccgattcttgtatgaaagtataacattttcccttggtgaagagcaaagcaaatgcagcaacgaagaaatggaccaatgttttttagg 13162021  T
Q  109 catggtaaaagccctaaagaaagaaggacatggaaagggagaaatcagtgagaagcatcttagagacactgcacttactatgatatttgccggaaatggt 208  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||| |||||||| |||||| | |||||||||||||||    
T  13162020 catggtaaaagccctaaagaaagaaggatatggaaagggggaaatcagtgagaagtatcttagagatactgcactcactatggtgtttgccggaaatggt 13161921  T
Q  209 acaattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatc 289  Q
     |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  13161920 tcaattagttcagctctcagttggtttttctggctcctttcaacttatcctattgtggaagaaaaaatcattcaagagatc 13161840  T

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Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 200 - 285
Target Start/End: Complemental strand, 13007608 - 13007523
Alignment:
Q  200 ggaaatggtacaattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaaga 285  Q
    |||||||| ||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||  ||||| ||||||||    
T  13007608 ggaaatggcacaattagttcaggtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaaga 13007523  T

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Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 114 - 285
Target Start/End: Complemental strand, 13101494 - 13101323
Alignment:
Q  114 taaaagccctaaagaaagaaggacatggaaagggagaaatcagtgagaagcatcttagagacactgcacttactatgatatttgccggaaatggtacaat 213  Q
    ||||||| |||| ||| ||||||  ||||||||| |||||   ||||||| |||||||||||| || | | ||| |  | || || ||||||||  || |    
T  13101494 taaaagcactaacgaaggaaggatctggaaagggggaaatggatgagaagtatcttagagacaatgtaatcactctctttttagcaggaaatggcccagt 13101395  T
Q  214 tagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaaga 285  Q
    ||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||  ||||| ||||||||    
T  13101394 tagttcagctctcagttggtttttctggcttgtttccactcatcctattgtggaagccaaaataattcaaga 13101323  T

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Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 155 - 289
Target Start/End: Original strand, 30367847 - 30367981
Alignment:
Q  155 agtgagaagcatcttagagacactgcacttactatgatatttgccggaaatggtacaattagttcagctctcagttggtttttctggcttctttcaactt 254  Q
    ||||||||| |||||||||||| ||||||  || |  | || || || ||||| ||| ||||||||  |||||||||||||||||||||| ||||||||     
T  30367847 agtgagaagtatcttagagacaatgcactctctcttttgttagcaggtaatggcacacttagttcaagtctcagttggtttttctggcttgtttcaactc 30367946  T
Q  255 atcctattgtggaagaaaaaatcattcaagagatc 289  Q
    |||||||||||||||  ||||| ||||||||||||    
T  30367947 atcctattgtggaagccaaaattattcaagagatc 30367981  T

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Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 285
Target Start/End: Original strand, 13069917 - 13070045
Alignment:
Q  157 tgagaagcatcttagagacactgcacttactatgatatttgccggaaatggtacaattagttcagctctcagttggtttttctggcttctttcaacttat 256  Q
    ||||||| |||||||||||| ||||||  || |  | || || |||||||| ||| ||| ||||| |||||||||||||||||||||| |||||||| ||    
T  13069917 tgagaagtatcttagagacaatgcactctctctctttttagcaggaaatggcacagttacttcaggtctcagttggtttttctggcttgtttcaactcat 13070016  T
Q  257 cctattgtggaagaaaaaatcattcaaga 285  Q
    |||||||||||||  ||||| ||||||||    
T  13070017 cctattgtggaagccaaaattattcaaga 13070045  T

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Target: chr1; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 289
Target Start/End: Original strand, 13244302 - 13244391
Alignment:
Q  200 ggaaatggtacaattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatc 289  Q
    |||||||| ||||||||||||| ||| |||||||| || |||||| |||||||| ||||||||| |||||  ||||| ||||||||||||    
T  13244302 ggaaatggaacaattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattggggaagcgaaaattattcaagagatc 13244391  T

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Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 113 - 285
Target Start/End: Complemental strand, 13214314 - 13214142
Alignment:
Q  113 gtaaaagccctaaagaaagaaggacatggaaagggagaaatcagtgagaagcatcttagagacactgcacttactatgatatttgccggaaatggtacaa 212  Q
    |||||||| |||| ||| ||||||  ||||||||| |||||   ||||||| |||||||||||| |||  | ||| |  | || || ||||||||  ||     
T  13214314 gtaaaagcactaatgaaggaaggatttggaaagggggaaatggatgagaagtatcttagagacaatgcgatcactctctttttagcaggaaatggcccag 13214215  T
Q  213 ttagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaaga 285  Q
    || |||||| ||||| |||||||||||||||| |||||||| ||| |||||||||||  ||||| ||||||||    
T  13214214 ttcgttcaggtctcatttggtttttctggcttgtttcaactcatcttattgtggaagctaaaattattcaaga 13214142  T

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Target: chr1; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 114 - 285
Target Start/End: Complemental strand, 19727647 - 19727476
Alignment:
Q  114 taaaagccctaaagaaagaaggacatggaaagggagaaatcagtgagaagcatcttagagacactgcacttactatgatatttgccggaaatggtacaat 213  Q
    ||||||| |||| ||| ||||||  ||||||||| ||||| | ||||||| |||||||||||| |  ||| ||| |  | || || ||||||||  || |    
T  19727647 taaaagcactaatgaaggaaggatctggaaagggggaaatgaatgagaagtatcttagagacaatttactcactctctttttagcaggaaatggcccagt 19727548  T
Q  214 tagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaaga 285  Q
    |||| ||| ||||||||||||||| |||||| |||| ||| |||||||||| ||||  ||||| ||||||||    
T  19727547 tagtacaggtctcagttggtttttttggcttgtttcgactcatcctattgtcgaagccaaaattattcaaga 19727476  T

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Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 13010842 - 13010797
Alignment:
Q  8 cgaagaatatcttgaccgattcttgtatgaaagtataacattttcc 53  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  13010842 cgaagaaaatcttgaccgattcttgtatgaaagtataacattttcc 13010797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 285
Target Start/End: Complemental strand, 13205060 - 13204782
Alignment:
Q  8 cgaagaatatcttgaccgattcttgtatgaaagtataacattttcccatggtgaagagcaaaggaagtgcagcg---atgaagaaatggaccaa-gtatt 103  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||| |     ||||||||||||||| || ||    ||||||||||||| || ||  |    
T  13205060 cgaagaaaatcttgaccgattcttatatgaaagtataacattttccaa---acaagagcaaaggaagtacaacggtagtgaagaaatggacgaatgttat 13204964  T
Q  104 ttaggcatggtaaaagccctaaagaaagaaggacatggaaagggagaaatcagtgagaagcatcttagagacactgcacttactatgatatttgccggaa 203  Q
    || | |  || |||||| |  | ||| |||||| ||||||||| |||||| |||| ||||  ||||||||||  | ||||  || |  | || || ||||    
T  13204963 tttgtccgggaaaaagctcggacgaaggaaggatatggaaaggaagaaatgagtgggaagtttcttagagacgatacactctctctcttcttagcaggaa 13204864  T
Q  204 atggtacaattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaaga 285  Q
     |||| ||  |||||||| ||| ||||||||||| |||||| |||| ||| |||||||||||||||  ||||| ||||||||    
T  13204863 gtggtccagctagttcaggtctaagttggtttttttggcttgtttccactcatcctattgtggaagccaaaataattcaaga 13204782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 200 - 289
Target Start/End: Complemental strand, 13271997 - 13271908
Alignment:
Q  200 ggaaatggtacaattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatc 289  Q
    |||||||| ||| ||||||||| ||| |||||||| || |||||| |||||||| |||||| |||||||| |||| | ||||||||||||    
T  13271997 ggaaatggaacagttagttcaggtctaagttggttcttttggcttgtttcaactcatcctaatgtggaagcaaaacttattcaagagatc 13271908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 200 - 288
Target Start/End: Original strand, 12963692 - 12963780
Alignment:
Q  200 ggaaatggtacaattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagat 288  Q
    |||| ||| ||| ||||||||| ||| |||||||| || |||||| |||||||| ||||||||||||||   ||||| |||||||||||    
T  12963692 ggaagtggaacagttagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaaactaaaattattcaagagat 12963780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 289
Target Start/End: Original strand, 19278952 - 19279038
Alignment:
Q  203 aatggtacaattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatc 289  Q
    ||||| ||||||||||| | ||||| |||||| || |||||  | |||||| |||||||||| |||| |||||| ||||||||||||    
T  19278952 aatggaacaattagttcgggtctcaattggttcttttggctcgtatcaactcatcctattgtcgaagcaaaaattattcaagagatc 19279038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 288
Target Start/End: Original strand, 13064952 - 13065085
Alignment:
Q  155 agtgagaagcatcttagagacactgcacttactatgatatttgccggaaatggtacaattagttcagctctcagttggtttttctggcttctttcaactt 254  Q
    ||||||||| ||||||||||||||||| | | | |  | || || ||||| || ||| ||||||||| |||||||||||| || |||||| |||||  |     
T  13064952 agtgagaagtatcttagagacactgcagtcaatctattgttagcgggaaacggcacagttagttcaggtctcagttggttcttttggcttgtttcatgtc 13065051  T
Q  255 atcctattgtggaagaaaaaatcattcaagagat 288  Q
    ||||| |||||||||  || || |||||||||||    
T  13065052 atcctgttgtggaagccaagattattcaagagat 13065085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 13069779 - 13069824
Alignment:
Q  8 cgaagaatatcttgaccgattcttgtatgaaagtataacattttcc 53  Q
    ||||||| |||||||||| |||||||||||| ||||||||||||||    
T  13069779 cgaagaaaatcttgaccgtttcttgtatgaaggtataacattttcc 13069824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 30367697 - 30367738
Alignment:
Q  9 gaagaatatcttgaccgattcttgtatgaaagtataacattt 50  Q
    |||||| |||||||||||||||||||||||||| ||||||||    
T  30367697 gaagaaaatcttgaccgattcttgtatgaaagtgtaacattt 30367738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 200 - 288
Target Start/End: Original strand, 31396459 - 31396548
Alignment:
Q  200 ggaaatggtacaattagttcagctctcagttggtttttctggctt-ctttcaacttatcctattgtggaagaaaaaatcattcaagagat 288  Q
    |||||||| ||||||||||||  |||| |||||||||||||||||  |||||||| |||||| ||||||||  ||||| |||||||||||    
T  31396459 ggaaatggcacaattagttcaagtctcggttggtttttctggcttgttttcaactcatcctaatgtggaagccaaaattattcaagagat 31396548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 31396269 - 31396310
Alignment:
Q  10 aagaatatcttgaccgattcttgtatgaaagtataacatttt 51  Q
    ||||| ||||| |||||||||||||||| |||||||||||||    
T  31396269 aagaaaatcttaaccgattcttgtatgacagtataacatttt 31396310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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