View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18637_low_12 (Length: 303)

Name: NF18637_low_12
Description: NF18637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18637_low_12
NF18637_low_12
[»] chr5 (40 HSPs)
chr5 (71-303)||(41781826-41782054)
chr5 (108-303)||(40519590-40519787)
chr5 (1-45)||(671140-671184)
chr5 (5-45)||(39527935-39527975)
chr5 (1-43)||(12769206-12769248)
chr5 (1-46)||(6219271-6219316)
chr5 (1-45)||(1287318-1287362)
chr5 (1-45)||(10070768-10070812)
chr5 (1-45)||(12707957-12708001)
chr5 (1-45)||(40044997-40045041)
chr5 (234-274)||(40510645-40510685)
chr5 (5-48)||(4430026-4430069)
chr5 (1-48)||(6053132-6053179)
chr5 (5-48)||(25328389-25328432)
chr5 (1-43)||(9068808-9068850)
chr5 (6-43)||(27004051-27004088)
chr5 (5-54)||(36569273-36569322)
chr5 (1-38)||(42337924-42337961)
chr5 (5-45)||(1244266-1244306)
chr5 (5-45)||(2103029-2103069)
chr5 (5-45)||(4164962-4165002)
chr5 (5-45)||(4617851-4617891)
chr5 (5-45)||(6672244-6672284)
chr5 (5-45)||(7179386-7179426)
chr5 (5-45)||(9902586-9902626)
chr5 (1-33)||(12819626-12819658)
chr5 (5-45)||(12878203-12878243)
chr5 (5-45)||(16496603-16496643)
chr5 (5-45)||(17869209-17869249)
chr5 (5-45)||(18473917-18473957)
chr5 (1-45)||(19836168-19836212)
chr5 (1-45)||(21067440-21067484)
chr5 (5-45)||(23311258-23311298)
chr5 (1-45)||(24443948-24443992)
chr5 (5-45)||(28143317-28143357)
chr5 (5-45)||(29119609-29119649)
chr5 (5-45)||(33617099-33617139)
chr5 (5-45)||(36726992-36727032)
chr5 (5-45)||(39151011-39151051)
chr5 (5-45)||(41562461-41562501)
[»] chr2 (36 HSPs)
chr2 (160-303)||(18163626-18163764)
chr2 (5-45)||(23497597-23497637)
chr2 (1-48)||(18368794-18368841)
chr2 (1-48)||(18779911-18779958)
chr2 (5-45)||(12236124-12236164)
chr2 (1-45)||(13268056-13268100)
chr2 (5-45)||(39070022-39070062)
chr2 (1-45)||(40592316-40592360)
chr2 (1-37)||(42133523-42133559)
chr2 (5-48)||(34242536-34242579)
chr2 (1-43)||(12541417-12541459)
chr2 (3-40)||(41520506-41520543)
chr2 (1-45)||(727370-727414)
chr2 (5-45)||(2287394-2287434)
chr2 (5-45)||(8859372-8859412)
chr2 (5-45)||(10392648-10392688)
chr2 (5-45)||(15897217-15897257)
chr2 (5-45)||(16535028-16535068)
chr2 (1-33)||(18999344-18999376)
chr2 (5-45)||(20251570-20251610)
chr2 (5-45)||(23080183-23080223)
chr2 (5-45)||(23957055-23957095)
chr2 (5-45)||(25510387-25510427)
chr2 (5-45)||(32023255-32023295)
chr2 (5-45)||(33607046-33607086)
chr2 (5-45)||(34481756-34481796)
chr2 (5-45)||(34667047-34667087)
chr2 (5-45)||(35687871-35687911)
chr2 (1-45)||(35706855-35706899)
chr2 (5-45)||(36754826-36754866)
chr2 (1-33)||(38463154-38463186)
chr2 (5-45)||(38490485-38490525)
chr2 (5-45)||(42007300-42007340)
chr2 (5-45)||(42160342-42160382)
chr2 (5-37)||(42211289-42211321)
chr2 (5-45)||(43461419-43461459)
[»] scaffold0122 (1 HSPs)
scaffold0122 (1-48)||(15677-15724)
[»] chr8 (33 HSPs)
chr8 (1-45)||(22762007-22762051)
chr8 (5-48)||(9998728-9998771)
chr8 (5-45)||(3054027-3054067)
chr8 (1-49)||(3822396-3822443)
chr8 (1-45)||(4312136-4312180)
chr8 (5-45)||(7772135-7772175)
chr8 (1-45)||(8547211-8547255)
chr8 (5-45)||(14243702-14243742)
chr8 (1-45)||(20990494-20990538)
chr8 (5-45)||(25199049-25199089)
chr8 (5-45)||(26675560-26675600)
chr8 (5-45)||(26737974-26738014)
chr8 (1-45)||(27544997-27545041)
chr8 (5-45)||(34540149-34540189)
chr8 (1-45)||(34711636-34711680)
chr8 (1-45)||(36586485-36586529)
chr8 (5-48)||(44814863-44814906)
chr8 (1-43)||(403671-403713)
chr8 (1-38)||(35222283-35222320)
chr8 (5-45)||(2733619-2733659)
chr8 (5-45)||(4430820-4430860)
chr8 (5-45)||(4977119-4977159)
chr8 (5-45)||(6317303-6317343)
chr8 (5-45)||(11100373-11100413)
chr8 (5-49)||(12702383-12702427)
chr8 (6-38)||(23554880-23554912)
chr8 (5-45)||(26690697-26690737)
chr8 (5-49)||(31665197-31665241)
chr8 (5-45)||(35421703-35421743)
chr8 (5-45)||(37295129-37295169)
chr8 (5-45)||(38070566-38070606)
chr8 (5-45)||(41562445-41562485)
chr8 (1-33)||(42650183-42650215)
[»] chr7 (30 HSPs)
chr7 (1-45)||(19563176-19563220)
chr7 (1-45)||(24382594-24382638)
chr7 (5-45)||(1573926-1573966)
chr7 (5-45)||(4106557-4106597)
chr7 (5-45)||(18944927-18944967)
chr7 (1-37)||(28382600-28382636)
chr7 (5-45)||(31717300-31717340)
chr7 (1-45)||(32251416-32251460)
chr7 (1-48)||(29628465-29628512)
chr7 (5-43)||(6369533-6369571)
chr7 (5-43)||(6377998-6378036)
chr7 (5-54)||(10166864-10166913)
chr7 (5-38)||(16816701-16816734)
chr7 (4-45)||(17752618-17752659)
chr7 (5-50)||(33512795-33512840)
chr7 (7-48)||(36280012-36280053)
chr7 (5-45)||(2354882-2354922)
chr7 (5-45)||(3497602-3497642)
chr7 (1-45)||(4227337-4227381)
chr7 (5-45)||(4887598-4887638)
chr7 (5-33)||(5110837-5110865)
chr7 (5-45)||(6384603-6384643)
chr7 (1-45)||(23138652-23138696)
chr7 (5-45)||(27396399-27396439)
chr7 (5-45)||(35157169-35157209)
chr7 (1-45)||(40857421-40857465)
chr7 (1-33)||(45041814-45041846)
chr7 (5-45)||(45236933-45236973)
chr7 (5-45)||(48612520-48612560)
chr7 (5-45)||(48729769-48729809)
[»] chr1 (23 HSPs)
chr1 (1-45)||(19279933-19279977)
chr1 (1-43)||(2208976-2209018)
chr1 (1-45)||(5598304-5598348)
chr1 (1-45)||(11403172-11403216)
chr1 (5-45)||(17068155-17068195)
chr1 (5-45)||(32533830-32533870)
chr1 (1-48)||(15952913-15952960)
chr1 (4-43)||(41651078-41651117)
chr1 (1-43)||(15331143-15331185)
chr1 (5-45)||(10635492-10635532)
chr1 (11-43)||(16261096-16261128)
chr1 (5-45)||(19338263-19338303)
chr1 (5-45)||(24119659-24119699)
chr1 (5-45)||(28999377-28999417)
chr1 (5-45)||(29005093-29005133)
chr1 (1-45)||(40685532-40685576)
chr1 (5-45)||(40809298-40809338)
chr1 (5-45)||(40958659-40958699)
chr1 (5-45)||(42631070-42631110)
chr1 (1-33)||(43500224-43500256)
chr1 (5-45)||(43676109-43676149)
chr1 (5-45)||(48314170-48314210)
chr1 (5-45)||(48391959-48391999)
[»] scaffold0036 (1 HSPs)
scaffold0036 (5-48)||(95149-95192)
[»] chr6 (30 HSPs)
chr6 (5-48)||(2958993-2959036)
chr6 (5-45)||(735448-735488)
chr6 (1-45)||(4083590-4083634)
chr6 (5-45)||(8374145-8374185)
chr6 (1-45)||(8939629-8939673)
chr6 (1-45)||(10181048-10181092)
chr6 (6-45)||(15953237-15953276)
chr6 (5-43)||(6556568-6556606)
chr6 (1-43)||(34830783-34830825)
chr6 (5-45)||(1241598-1241638)
chr6 (5-45)||(2314684-2314724)
chr6 (1-33)||(2711319-2711351)
chr6 (5-45)||(4128948-4128988)
chr6 (5-45)||(5603532-5603572)
chr6 (4-48)||(5626144-5626188)
chr6 (5-45)||(7098809-7098849)
chr6 (5-45)||(8448227-8448267)
chr6 (5-45)||(8457031-8457071)
chr6 (5-33)||(8487638-8487666)
chr6 (5-45)||(12795104-12795144)
chr6 (5-45)||(13507395-13507435)
chr6 (5-45)||(16244414-16244454)
chr6 (5-45)||(17534608-17534648)
chr6 (5-45)||(18861852-18861892)
chr6 (8-48)||(26269245-26269285)
chr6 (5-45)||(31205268-31205308)
chr6 (1-37)||(31642767-31642803)
chr6 (5-33)||(31747071-31747099)
chr6 (5-45)||(32107920-32107960)
chr6 (5-33)||(32643813-32643841)
[»] chr4 (31 HSPs)
chr4 (3-45)||(1083511-1083553)
chr4 (5-43)||(31436003-31436041)
chr4 (2-43)||(17815224-17815265)
chr4 (1-45)||(3084323-3084367)
chr4 (5-45)||(18371349-18371389)
chr4 (1-45)||(24712091-24712135)
chr4 (5-48)||(1033534-1033577)
chr4 (5-48)||(28033192-28033235)
chr4 (5-48)||(47462121-47462164)
chr4 (5-48)||(54907977-54908020)
chr4 (1-38)||(29334505-29334542)
chr4 (5-45)||(1982564-1982604)
chr4 (5-45)||(4379310-4379350)
chr4 (5-45)||(5397025-5397065)
chr4 (5-45)||(9569478-9569518)
chr4 (5-45)||(12821168-12821208)
chr4 (1-45)||(13389023-13389067)
chr4 (5-45)||(23974727-23974767)
chr4 (1-45)||(28983735-28983779)
chr4 (5-45)||(30044669-30044709)
chr4 (5-33)||(31010030-31010058)
chr4 (5-45)||(35828277-35828317)
chr4 (1-45)||(36751981-36752025)
chr4 (5-45)||(42154223-42154263)
chr4 (5-45)||(42856566-42856606)
chr4 (10-54)||(43139996-43140039)
chr4 (5-45)||(46488202-46488242)
chr4 (5-45)||(49535888-49535928)
chr4 (5-45)||(49882794-49882834)
chr4 (5-37)||(50779876-50779908)
chr4 (5-45)||(51425333-51425373)
[»] chr3 (36 HSPs)
chr3 (5-51)||(40639599-40639645)
chr3 (1-45)||(15003631-15003675)
chr3 (5-45)||(34397683-34397723)
chr3 (1-45)||(40559677-40559721)
chr3 (1-45)||(41464667-41464711)
chr3 (5-45)||(41921509-41921549)
chr3 (1-45)||(44037525-44037569)
chr3 (5-45)||(53669796-53669836)
chr3 (5-48)||(11312590-11312633)
chr3 (1-48)||(23525987-23526034)
chr3 (1-48)||(28731847-28731894)
chr3 (5-48)||(44879318-44879361)
chr3 (1-43)||(11249965-11250007)
chr3 (5-46)||(36540107-36540148)
chr3 (5-33)||(1218456-1218484)
chr3 (5-45)||(2687562-2687602)
chr3 (5-45)||(2789063-2789103)
chr3 (5-45)||(3917769-3917809)
chr3 (1-49)||(4039788-4039836)
chr3 (5-45)||(4232262-4232302)
chr3 (5-45)||(4833194-4833234)
chr3 (5-45)||(6583320-6583360)
chr3 (5-45)||(8381082-8381122)
chr3 (5-45)||(12948813-12948853)
chr3 (5-45)||(13525172-13525212)
chr3 (1-45)||(18271580-18271624)
chr3 (5-45)||(24910373-24910413)
chr3 (5-45)||(32590975-32591015)
chr3 (5-45)||(32961063-32961103)
chr3 (5-37)||(35069324-35069356)
chr3 (5-45)||(37312531-37312571)
chr3 (5-45)||(46311528-46311568)
chr3 (5-45)||(46838812-46838852)
chr3 (1-45)||(47410833-47410877)
chr3 (5-45)||(48191097-48191137)
chr3 (5-45)||(50238925-50238965)
[»] scaffold0795 (1 HSPs)
scaffold0795 (1-33)||(1075-1107)
[»] scaffold0008 (1 HSPs)
scaffold0008 (5-45)||(39398-39438)
[»] scaffold0633 (1 HSPs)
scaffold0633 (4-43)||(3879-3918)
[»] scaffold0457 (1 HSPs)
scaffold0457 (5-48)||(6779-6822)
[»] scaffold0432 (1 HSPs)
scaffold0432 (5-45)||(9370-9410)
[»] scaffold0402 (1 HSPs)
scaffold0402 (5-45)||(1326-1366)
[»] scaffold0352 (1 HSPs)
scaffold0352 (9-49)||(9032-9071)
[»] scaffold0287 (1 HSPs)
scaffold0287 (5-45)||(1143-1183)
[»] scaffold0013 (1 HSPs)
scaffold0013 (5-45)||(90572-90612)


Alignment Details
Target: chr5 (Bit Score: 134; Significance: 9e-70; HSPs: 40)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 71 - 303
Target Start/End: Original strand, 41781826 - 41782054
Alignment:
Q  71 ttatttgagtatgaaatctctctagttctcnnnnnnnttcatatcagttattgatattagttttgaactctaaannnnnnnnnnnnnnnctagcctctta 170  Q
    ||||||||||| || |||||||||||||||       ||||||||| |||||||||||||||||||||||||||               |||||||||||    
T  41781826 ttatttgagtaagatatctctctagttctcaaaaaaattcatatcatttattgatattagttttgaactctaaattttttgacttttttctagcctctta 41781925  T
Q  171 attgctaaaactaacaatgcaagaggctaatatgaaaataaaaattcgaatacaaagtcatcgcaatgttaatatgttaatttacataaaagtgtgaatg 270  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41781926 attgttaaaactaacaatgcaagaggctaatatgaaaataaaaattcgaatacaaagtcatcgcaatgttaatatgttaatttacataaaagtgtgaatg 41782025  T
Q  271 tgacatgcatgttgaagttcttcatgagaccat 303  Q
    |||    ||||||||||||||||||||||||||    
T  41782026 tga----catgttgaagttcttcatgagaccat 41782054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 108 - 303
Target Start/End: Complemental strand, 40519787 - 40519590
Alignment:
Q  108 ttcatatcagttattgatattagttttgaactctaaannnnnnnnnnnnnnnctagcctcttaattgctaaaactaacaatgcaagaggctaatatga-- 205  Q
    ||||||||||||||||||||||||||||| |||||||               ||||||||||||||| |||||||||||||||| |||| |||||| |      
T  40519787 ttcatatcagttattgatattagttttgagctctaaaaattttaacttttttctagcctcttaattgttaaaactaacaatgca-gaggataatataaca 40519689  T
Q  206 -aaataaaaattcgaatacaaagtcatcgcaatgttaat----atgttaatttacataaaagtgtgaatgtgacatgcatgttgaagttcttcatgagac 300  Q
     ||| |||||| | |||||||||||||| ||||||||||    ||||||||||||||||||||||||||||||    |||||||||||| ||||||||||    
T  40519688 aaaaaaaaaatcccaatacaaagtcatcacaatgttaattaatatgttaatttacataaaagtgtgaatgtga----catgttgaagttgttcatgagac 40519593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 671140 - 671184
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||    
T  671140 ccgacctaacaatttcggcattttgccagttgaactaggacttct 671184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 39527975 - 39527935
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  39527975 cctaacaatttcggcattttaccagttgaactaggacttct 39527935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 12769206 - 12769248
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaactt 43  Q
    ||||||||||||||||||||||||||||||||| |||| ||||    
T  12769206 ccgacctaacaatttcggcattttaccagttgagctaggactt 12769248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 6219271 - 6219316
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttcta 46  Q
    ||||||||||||||||||| ||||||||||| |||||| |||||||    
T  6219271 ccgacctaacaatttcggcgttttaccagttaaactaggacttcta 6219316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 1287362 - 1287318
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||||||||||| |||| |||| ||||||    
T  1287362 ccgacctaacaatttcggcattttaccaattgagctaggacttct 1287318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 10070768 - 10070812
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||| |||||||||||||||| |||| ||||||    
T  10070768 ccgacctaacaatttcagcattttaccagttgagctaggacttct 10070812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 12707957 - 12708001
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||||||| |||||||| |||| ||||||    
T  12707957 ccgacctaacaatttcggcattttgccagttgagctaggacttct 12708001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 40044997 - 40045041
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||||||| |||| ||| |||||||||||    
T  40044997 ccgacctaacaatttcggcattttgccagctgagctagaacttct 40045041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 274
Target Start/End: Complemental strand, 40510685 - 40510645
Alignment:
Q  234 caatgttaatatgttaatttacataaaagtgtgaatgtgac 274  Q
    |||||||||| |||||| |||||||||||||||||||||||    
T  40510685 caatgttaatgtgttaaattacataaaagtgtgaatgtgac 40510645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 4430026 - 4430069
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttctaga 48  Q
    ||||||||||||| ||||||||||||||| |||||| |||||||    
T  4430026 cctaacaatttcgacattttaccagttgagctagaatttctaga 4430069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 6053132 - 6053179
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttctaga 48  Q
    ||||||||||||||||||||||||  ||||||| |||| |||||||||    
T  6053132 ccgacctaacaatttcggcattttgtcagttgagctaggacttctaga 6053179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 25328389 - 25328432
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttctaga 48  Q
    |||||||||||||||||||| |||||||| |||| |||||||||    
T  25328389 cctaacaatttcggcattttgccagttgagctaggacttctaga 25328432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 9068850 - 9068808
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaactt 43  Q
    ||||||||||||||||| ||||||||||||||| |||| ||||    
T  9068850 ccgacctaacaatttcgacattttaccagttgagctaggactt 9068808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 27004051 - 27004088
Alignment:
Q  6 ctaacaatttcggcattttaccagttgaactagaactt 43  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  27004051 ctaacaatttcggcattttaccagttgagctaggactt 27004088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 36569322 - 36569273
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttctagaccattt 54  Q
    |||||||||||||||||||| |||||||| |||| |||||| || |||||    
T  36569322 cctaacaatttcggcattttgccagttgagctaggacttctggatcattt 36569273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 42337924 - 42337961
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactag 38  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  42337924 ccgacctaacaatttcggcattttgccagttgagctag 42337961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 1244266 - 1244306
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  1244266 cctaacaatttcggcattttgccagttgagctaggacttct 1244306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 2103069 - 2103029
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  2103069 cctaacaatttcggcattttgccagttgagctaggacttct 2103029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 4165002 - 4164962
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  4165002 cctaacaatttcggcattttgccagttgagctaggacttct 4164962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 4617851 - 4617891
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||| ||||||||||||||| |||| ||||||    
T  4617851 cctaacaatttcgacattttaccagttgagctaggacttct 4617891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 6672284 - 6672244
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  6672284 cctaacaatttcggcattttgccagttgagctaggacttct 6672244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 7179386 - 7179426
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||| |||||| |||||||| |||||||||||    
T  7179386 cctaacaatttcgacattttgccagttgagctagaacttct 7179426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 9902586 - 9902626
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  9902586 cctaacaatttcggcattttgccagttgagctaggacttct 9902626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 12819626 - 12819658
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttga 33  Q
    |||||||||||||||||||||||||||| ||||    
T  12819626 ccgacctaacaatttcggcattttaccaattga 12819658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 12878203 - 12878243
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  12878203 cctaacaatttcggcattttgccagttgagctaggacttct 12878243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 16496643 - 16496603
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||| |||||| ||||||||||||| ||||||    
T  16496643 cctaacaatttcgacattttgccagttgaactaggacttct 16496603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 17869209 - 17869249
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  17869209 cctaacaatttcggcattttgccagttgagctaggacttct 17869249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 18473957 - 18473917
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  18473957 cctaacaatttcggcattttgccagttgagctaggacttct 18473917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 19836168 - 19836212
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||||||| |||||| |||||||| |||| ||||||    
T  19836168 ccgacctaacaatttcgacattttgccagttgagctaggacttct 19836212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 21067484 - 21067440
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||  |||||||||||||| |||| ||||||    
T  21067484 ccgacctaacaatttcgatattttaccagttgagctaggacttct 21067440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 23311258 - 23311298
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  23311258 cctaacaatttcggcattttgccagttgagctaggacttct 23311298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 24443948 - 24443992
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||| ||||| |||||||| |||| ||||||    
T  24443948 ccgacctaacaatttcggtattttgccagttgagctaggacttct 24443992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 28143317 - 28143357
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  28143317 cctaacaatttcggcattttgccagttgagctaggacttct 28143357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 29119649 - 29119609
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  29119649 cctaacaatttcggcattttgccagttgagctaggacttct 29119609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 33617139 - 33617099
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||| ||||||||||||||||||| |||| ||||||    
T  33617139 cctaacaatgtcggcattttaccagttgagctaggacttct 33617099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 36727032 - 36726992
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  36727032 cctaacaatttcggcattttgccagttgagctaggacttct 36726992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 39151011 - 39151051
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||| ||||||||||||||| |||| ||||||    
T  39151011 cctaacaatttcgacattttaccagttgagctaggacttct 39151051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 41562501 - 41562461
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  41562501 cctaacaatttcggcattttgccagttgagctaggacttct 41562461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 160 - 303
Target Start/End: Complemental strand, 18163764 - 18163626
Alignment:
Q  160 ctagcctcttaattgctaaaactaacaatgcaagaggctaatatgaaaataaaaattcgaatacaaagtcatcgcaatgttaatatgttaatttacataa 259  Q
    ||||||||||| ||| |||||||||||||||| |||||||||||||| | |||| | | || |||||||||||  |||||||||||||||||||||||||    
T  18163764 ctagcctcttagttgttaaaactaacaatgca-gaggctaatatgaacaaaaaagtcctaaaacaaagtcatcaaaatgttaatatgttaatttacataa 18163666  T
Q  260 aagtgtgaatgtgacatgcatgttgaagttcttcatgagaccat 303  Q
    ||||||||||||||    |||||||||||| |||||||||||||    
T  18163665 aagtgtgaatgtga----catgttgaagttgttcatgagaccat 18163626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 23497597 - 23497637
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  23497597 cctaacaatttcggcattttaccagttgaactaggacttct 23497637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 18368841 - 18368794
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttctaga 48  Q
    |||||||||||||||||||||||| |||||||| |||| |||||||||    
T  18368841 ccgacctaacaatttcggcattttgccagttgagctaggacttctaga 18368794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 18779958 - 18779911
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttctaga 48  Q
    ||||||||||||||||| |||||||||| ||||||||| |||||||||    
T  18779958 ccgacctaacaatttcgacattttaccaattgaactaggacttctaga 18779911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 12236164 - 12236124
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||||||||||||||||||| |||| ||||||    
T  12236164 cctaacaatttcggcattttaccagttgagctaggacttct 12236124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 13268056 - 13268100
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||||||| |||||||| |||| ||||||    
T  13268056 ccgacctaacaatttcggcattttgccagttgagctaggacttct 13268100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 39070062 - 39070022
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||||||||||||||||||| |||| ||||||    
T  39070062 cctaacaatttcggcattttaccagttgagctaggacttct 39070022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 40592360 - 40592316
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||||||| |||||||| |||| ||||||    
T  40592360 ccgacctaacaatttcggcattttgccagttgagctaggacttct 40592316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 42133523 - 42133559
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaacta 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  42133523 ccgacctaacaatttcggcattttgccagttgaacta 42133559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 34242536 - 34242579
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttctaga 48  Q
    ||||||||||||||||||||| ||||||| |||| |||||||||    
T  34242536 cctaacaatttcggcattttatcagttgagctaggacttctaga 34242579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 12541417 - 12541459
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaactt 43  Q
    |||||||||||||||||| |||||||||||||| |||| ||||    
T  12541417 ccgacctaacaatttcggtattttaccagttgacctagtactt 12541459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 41520543 - 41520506
Alignment:
Q  3 gacctaacaatttcggcattttaccagttgaactagaa 40  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  41520543 gacctaacaatttcagcattttaccagttgagctagaa 41520506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 727370 - 727414
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||||||||||||||  ||||||| |||| ||||||    
T  727370 ccgacctaacaatttcggcattttgtcagttgagctaggacttct 727414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 2287394 - 2287434
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  2287394 cctaacaatttcggcattttgccagttgagctaggacttct 2287434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 8859372 - 8859412
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||| |||||| | ||||||||||||||||||    
T  8859372 cctaacaatttcgacattttgctagttgaactagaacttct 8859412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 10392688 - 10392648
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||| ||||||||||||||||||| |||| ||||||    
T  10392688 cctaacaatgtcggcattttaccagttgagctaggacttct 10392648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 15897257 - 15897217
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  15897257 cctaacaatttcggcattttgccagttgagctaggacttct 15897217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 16535028 - 16535068
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||| ||||||| |||||||||||| ||||||    
T  16535028 cctaacaatttcgacattttatcagttgaactaggacttct 16535068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 18999376 - 18999344
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttga 33  Q
    |||||||||||||||||||||||| ||||||||    
T  18999376 ccgacctaacaatttcggcattttgccagttga 18999344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 20251570 - 20251610
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  20251570 cctaacaatttcggcattttgccagttgagctaggacttct 20251610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 23080183 - 23080223
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  23080183 cctaacaatttcggcattttgccagttgagctaggacttct 23080223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 23957095 - 23957055
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||| |||||| |||||||| |||||||||||    
T  23957095 cctaacaatttcgacattttgccagttgagctagaacttct 23957055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 25510387 - 25510427
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||| |||||||||||||| |||| ||||||    
T  25510387 cctaacaatttcggtattttaccagttgagctaggacttct 25510427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 32023295 - 32023255
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  32023295 cctaacaatttcggcattttgccagttgagctaggacttct 32023255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 33607086 - 33607046
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  33607086 cctaacaatttcggcattttgccagttgagctaggacttct 33607046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 34481756 - 34481796
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  34481756 cctaacaatttcggcattttgccagttgagctaggacttct 34481796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 34667087 - 34667047
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  34667087 cctaacaatttcggcattttgccagttgagctaggacttct 34667047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 35687871 - 35687911
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||||||||||| ||||||| |||| ||||||    
T  35687871 cctaacaatttcggcattttatcagttgagctaggacttct 35687911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 35706899 - 35706855
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||||||| |||||| |||||||| |||| ||||||    
T  35706899 ccgacctaacaatttcgacattttgccagttgagctaggacttct 35706855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 36754826 - 36754866
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  36754826 cctaacaatttcggcattttgccagttgagctaggacttct 36754866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 38463186 - 38463154
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttga 33  Q
    |||||||||||||||||||||||| ||||||||    
T  38463186 ccgacctaacaatttcggcattttgccagttga 38463154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 38490485 - 38490525
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  38490485 cctaacaatttcggcattttgccagttgagctaggacttct 38490525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 42007300 - 42007340
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||| ||||||||||||||| |||| ||||||    
T  42007300 cctaacaatttcgacattttaccagttgagctaggacttct 42007340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 42160342 - 42160382
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  42160342 cctaacaatttcggcattttgccagttgagctaggacttct 42160382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 42211321 - 42211289
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaacta 37  Q
    ||||||||||||| |||||||||||||||||||    
T  42211321 cctaacaatttcgacattttaccagttgaacta 42211289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 43461419 - 43461459
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||| ||||||||||||||| |||| ||||||    
T  43461419 cctaacaatttcgacattttaccagttgagctaggacttct 43461459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 15677 - 15724
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttctaga 48  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||    
T  15677 ccgacctaacaatttcggcattttgccagttgaactaggacttctaga 15724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 22762051 - 22762007
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||||||||||||||  |||||||||||||||||||    
T  22762051 ccgacctaacaatttcggcattttgtcagttgaactagaacttct 22762007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 9998728 - 9998771
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttctaga 48  Q
    |||||||||||||||||||| ||||||||||||| |||||||||    
T  9998728 cctaacaatttcggcattttgccagttgaactaggacttctaga 9998771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 3054067 - 3054027
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||||||||||    
T  3054067 cctaacaatttcggcattttgccagttgagctagaacttct 3054027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 3822443 - 3822396
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttctagac 49  Q
    ||||||| |||||||||||||||  ||||||||||||||||||||||||    
T  3822443 ccgaccttacaatttcggcatttg-ccagttgaactagaacttctagac 3822396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4312180 - 4312136
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||||||| |||||||| |||| ||||||    
T  4312180 ccgacctaacaatttcggcattttgccagttgagctaggacttct 4312136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 7772135 - 7772175
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||||||||||||||||||| |||| ||||||    
T  7772135 cctaacaatttcggcattttaccagttgagctaggacttct 7772175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 8547211 - 8547255
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||||||| |||||||| |||| ||||||    
T  8547211 ccgacctaacaatttcggcattttgccagttgagctaggacttct 8547255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 14243742 - 14243702
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||||||||||||||||||| |||| ||||||    
T  14243742 cctaacaatttcggcattttaccagttgagctaggacttct 14243702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 20990494 - 20990538
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||| |||||||||| |||||||| |||||||||||    
T  20990494 ccgacctaacaatgtcggcattttgccagttgagctagaacttct 20990538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 25199089 - 25199049
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||||||||||||||||||| |||| ||||||    
T  25199089 cctaacaatttcggcattttaccagttgagctaggacttct 25199049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 26675600 - 26675560
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||||||||||||||||||| |||| ||||||    
T  26675600 cctaacaatttcggcattttaccagttgagctaggacttct 26675560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 26738014 - 26737974
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||||||||||||||||||| |||| ||||||    
T  26738014 cctaacaatttcggcattttaccagttgagctaggacttct 26737974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 27544997 - 27545041
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||||||| |||||| |||||||| |||||||||||    
T  27544997 ccgacctaacaatttcgacattttgccagttgagctagaacttct 27545041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 34540149 - 34540189
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| ||||||||||||| ||||||    
T  34540149 cctaacaatttcggcattttgccagttgaactaggacttct 34540189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 34711636 - 34711680
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||||||| |||||||| |||| ||||||    
T  34711636 ccgacctaacaatttcggcattttgccagttgagctaggacttct 34711680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 36586529 - 36586485
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||||||| |||||||| |||| ||||||    
T  36586529 ccgacctaacaatttcggcattttgccagttgagctaggacttct 36586485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 44814906 - 44814863
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttctaga 48  Q
    |||||||||||||||||||| |||||||| |||| |||||||||    
T  44814906 cctaacaatttcggcattttgccagttgagctaggacttctaga 44814863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 403713 - 403671
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaactt 43  Q
    ||||||||||||||||||||||||| ||||||| |||| ||||    
T  403713 ccgacctaacaatttcggcattttatcagttgagctaggactt 403671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 35222320 - 35222283
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactag 38  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  35222320 ccgacctaacaatttcgacattttaccagttgagctag 35222283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 2733659 - 2733619
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  2733659 cctaacaatttcggcattttgccagttgagctaggacttct 2733619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 4430820 - 4430860
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  4430820 cctaacaatttcggcattttgccagttgagctaggacttct 4430860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 4977119 - 4977159
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  4977119 cctaacaatttcggcattttgccagttgagctaggacttct 4977159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 6317343 - 6317303
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  6317343 cctaacaatttcggcattttgccagttgagctaggacttct 6317303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 11100373 - 11100413
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  11100373 cctaacaatttcggcatttttccagttgagctaggacttct 11100413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 12702383 - 12702427
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttctagac 49  Q
    |||||||||||||| |||| ||||||||| |||| ||||||||||    
T  12702383 cctaacaatttcggtatttaaccagttgagctaggacttctagac 12702427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 23554912 - 23554880
Alignment:
Q  6 ctaacaatttcggcattttaccagttgaactag 38  Q
    |||||||||||||||||||||||||||| ||||    
T  23554912 ctaacaatttcggcattttaccagttgagctag 23554880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 26690737 - 26690697
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  26690737 cctaacaatttcggcattttgccagttgagctaggacttct 26690697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 31665197 - 31665241
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttctagac 49  Q
    |||||||||||||  |||||| |||||||||||| ||||||||||    
T  31665197 cctaacaatttcgatattttatcagttgaactaggacttctagac 31665241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 35421703 - 35421743
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||| |||||| ||||||||||||| ||||||    
T  35421703 cctaacaatttcgacattttgccagttgaactaggacttct 35421743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 37295169 - 37295129
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  37295169 cctaacaatttcggcattttgccagttgagctaggacttct 37295129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 38070566 - 38070606
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  38070566 cctaacaatttcggcattttgccagttgagctaggacttct 38070606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 41562485 - 41562445
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||| ||||||||||||||| |||| ||||||    
T  41562485 cctaacaatttcgacattttaccagttgagctaggacttct 41562445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 42650215 - 42650183
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttga 33  Q
    ||||||||||||||||||||||||||| |||||    
T  42650215 ccgacctaacaatttcggcattttaccggttga 42650183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 19563176 - 19563220
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||||||||| |||||| |||||||||||    
T  19563176 ccgacctaacaatttcggcattttactagttgagctagaacttct 19563220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 24382638 - 24382594
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||| |||||||||||||| |||||||||||    
T  24382638 ccgacctaacaatttcggtattttaccagttgagctagaacttct 24382594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 1573926 - 1573966
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||||||||||||||||||| |||| ||||||    
T  1573926 cctaacaatttcggcattttaccagttgagctaggacttct 1573966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 4106597 - 4106557
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||||||||||||||||||| |||| ||||||    
T  4106597 cctaacaatttcggcattttaccagttgagctaggacttct 4106557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 18944967 - 18944927
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| ||||||||||||| ||||||    
T  18944967 cctaacaatttcggcattttgccagttgaactaggacttct 18944927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 28382636 - 28382600
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaacta 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  28382636 ccgacctaacaatttcggcattttgccagttgaacta 28382600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 31717340 - 31717300
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||||||||||||||||||| |||| ||||||    
T  31717340 cctaacaatttcggcattttaccagttgagctaggacttct 31717300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 32251416 - 32251460
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||| |||||||||||||||||| ||||||||||||| ||||||    
T  32251416 ccgacttaacaatttcggcattttgccagttgaactaggacttct 32251460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 29628465 - 29628512
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttctaga 48  Q
    ||||||||| |||||||||||||| |||||||| |||| |||||||||    
T  29628465 ccgacctaataatttcggcatttttccagttgagctaggacttctaga 29628512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 6369571 - 6369533
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaactt 43  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  6369571 cctaacaatttcggcattttaccagttgagttagaactt 6369533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 6378036 - 6377998
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaactt 43  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  6378036 cctaacaatttcggcattttaccagttgagttagaactt 6377998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 10166913 - 10166864
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttctagaccattt 54  Q
    ||||||||||||||||||||| ||||||| |||| |||||| || |||||    
T  10166913 cctaacaatttcggcattttatcagttgagctaggacttcttgatcattt 10166864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 16816734 - 16816701
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactag 38  Q
    |||||||||||||||||||| |||||||||||||    
T  16816734 cctaacaatttcggcattttgccagttgaactag 16816701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 17752659 - 17752618
Alignment:
Q  4 acctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||||||||||||| || |||| ||||||||||    
T  17752659 acctaacaatttcggcattttactagctgaattagaacttct 17752618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 33512840 - 33512795
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttctagacc 50  Q
    |||||||||||||||||||| |||||||| |||| |||| ||||||    
T  33512840 cctaacaatttcggcattttgccagttgagctaggacttatagacc 33512795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 36280012 - 36280053
Alignment:
Q  7 taacaatttcggcattttaccagttgaactagaacttctaga 48  Q
    |||||||||||||||||| |||||||| |||| |||||||||    
T  36280012 taacaatttcggcattttgccagttgagctaggacttctaga 36280053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 2354882 - 2354922
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  2354882 cctaacaatttcggcattttgccagttgagctaggacttct 2354922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 3497602 - 3497642
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  3497602 cctaacaatttcggcattttgccagttgagctaggacttct 3497642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4227381 - 4227337
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||| |||||||| ||||| |||| ||||||    
T  4227381 ccgacctaacaatttcggtattttaccggttgatctaggacttct 4227337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 4887598 - 4887638
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  4887598 cctaacaatttcggcattttgccagttgagctaggacttct 4887638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 33
Target Start/End: Original strand, 5110837 - 5110865
Alignment:
Q  5 cctaacaatttcggcattttaccagttga 33  Q
    |||||||||||||||||||||||||||||    
T  5110837 cctaacaatttcggcattttaccagttga 5110865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 6384603 - 6384643
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||| |||||||||||||| |||| ||||||    
T  6384603 cctaacaatttcggtattttaccagttgagctaggacttct 6384643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 23138696 - 23138652
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||| |||||||||||||| | |||| ||||||    
T  23138696 ccgacctaacaatttcagcattttaccagttaagctaggacttct 23138652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 27396399 - 27396439
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  27396399 cctaacaatttcggcattttgccagttgagctaggacttct 27396439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 35157169 - 35157209
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  35157169 cctaacaatttcggcattttgccagttgagctaggacttct 35157209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 40857421 - 40857465
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||||||| |||||||||| |||| |||| ||||||    
T  40857421 ccgacctaacaatttcgacattttaccatttgagctaggacttct 40857465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 45041814 - 45041846
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttga 33  Q
    |||||||||||||||||||||||| ||||||||    
T  45041814 ccgacctaacaatttcggcattttgccagttga 45041846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 45236973 - 45236933
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  45236973 cctaacaatttcggcattttgccagttgagctaggacttct 45236933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 48612560 - 48612520
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  48612560 cctaacaatttcggcattttgccagttgagctaggacttct 48612520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 48729769 - 48729809
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  48729769 cctaacaatttcggcattttgccagttgagctaggacttct 48729809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 19279933 - 19279977
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||    
T  19279933 ccgacctaacaatttcggcattttaccagttgagctaggacttct 19279977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 2208976 - 2209018
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaactt 43  Q
    |||| |||||||||||||||||||| |||||||||||||||||    
T  2208976 ccgatctaacaatttcggcattttatcagttgaactagaactt 2209018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 5598348 - 5598304
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||||||| |||||||| |||| ||||||    
T  5598348 ccgacctaacaatttcggcatttttccagttgagctaggacttct 5598304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 11403216 - 11403172
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||||||| |||||||| |||| ||||||    
T  11403216 ccgacctaacaatttcggcattttcccagttgagctaggacttct 11403172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 17068195 - 17068155
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||||||||||||||||||| |||| ||||||    
T  17068195 cctaacaatttcggcattttaccagttgagctaggacttct 17068155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 32533870 - 32533830
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||| |||||||| ||||||||||||||||||||    
T  32533870 cctaacaattttggcattttgccagttgaactagaacttct 32533830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 15952913 - 15952960
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttctaga 48  Q
    |||||||||||||||||||||||| |||||||| |||  |||||||||    
T  15952913 ccgacctaacaatttcggcattttgccagttgagctacgacttctaga 15952960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 41651117 - 41651078
Alignment:
Q  4 acctaacaatttcggcattttaccagttgaactagaactt 43  Q
    |||||||||||||||||||||||||||||| |||| ||||    
T  41651117 acctaacaatttcggcattttaccagttgagctaggactt 41651078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 15331143 - 15331185
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaactt 43  Q
    |||||||||||||||||||||||| |||||||| |||| ||||    
T  15331143 ccgacctaacaatttcggcatttttccagttgagctaggactt 15331185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 10635532 - 10635492
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  10635532 cctaacaatttcggcattttgccagttgagctaggacttct 10635492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 16261128 - 16261096
Alignment:
Q  11 aatttcggcattttaccagttgaactagaactt 43  Q
    |||||||||||||||||||||||||||| ||||    
T  16261128 aatttcggcattttaccagttgaactaggactt 16261096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 19338263 - 19338303
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  19338263 cctaacaatttcggcattttgccagttgagctaggacttct 19338303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 24119699 - 24119659
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  24119699 cctaacaatttcggcattttgccagttgagctaggacttct 24119659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 28999417 - 28999377
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  28999417 cctaacaatttcggcattttgccagttgagctaggacttct 28999377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 29005133 - 29005093
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  29005133 cctaacaatttcggcattttgccagttgagctaggacttct 29005093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 40685576 - 40685532
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||||||| |||||| |||||||| |||| ||||||    
T  40685576 ccgacctaacaatttcgacattttgccagttgagctaggacttct 40685532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 40809298 - 40809338
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  40809298 cctaacaatttcggcattttgccagttgagctaggacttct 40809338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 40958659 - 40958699
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  40958659 cctaacaatttcggcattttgccagttgagctaggacttct 40958699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 42631070 - 42631110
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  42631070 cctaacaatttcggcattttgccagttgagctaggacttct 42631110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 43500224 - 43500256
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttga 33  Q
    ||||||||||||||||| |||||||||||||||    
T  43500224 ccgacctaacaatttcgacattttaccagttga 43500256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 43676109 - 43676149
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  43676109 cctaacaatttcggcattttgccagttgagctaggacttct 43676149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 48314210 - 48314170
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  48314210 cctaacaatttcggcattttgccagttgagctaggacttct 48314170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 48391999 - 48391959
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  48391999 cctaacaatttcggcattttgccagttgagctaggacttct 48391959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 95192 - 95149
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttctaga 48  Q
    |||||||||||||||||||| |||||||||||||||||| ||||    
T  95192 cctaacaatttcggcattttgccagttgaactagaacttttaga 95149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 2959036 - 2958993
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttctaga 48  Q
    ||||||||||||| |||||||||||||||| |||||||||||||    
T  2959036 cctaacaatttcgacattttaccagttgaattagaacttctaga 2958993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 735488 - 735448
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||||||||||    
T  735488 cctaacaatttcggcattttgccagttgagctagaacttct 735448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4083634 - 4083590
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||||||| |||||||| |||| ||||||    
T  4083634 ccgacctaacaatttcggcattttgccagttgagctaggacttct 4083590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 8374185 - 8374145
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||||||||||||  ||||||||||    
T  8374185 cctaacaatttcggcattttaccagttgagttagaacttct 8374145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 8939673 - 8939629
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||||||| |||||||| |||| ||||||    
T  8939673 ccgacctaacaatttcggcattttgccagttgagctaggacttct 8939629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 10181092 - 10181048
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||||||| |||||||| |||| ||||||    
T  10181092 ccgacctaacaatttcggcattttgccagttgagctaggacttct 10181048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 15953276 - 15953237
Alignment:
Q  6 ctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  15953276 ctaacaatttcggcattttaccagttgagctaggacttct 15953237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 6556568 - 6556606
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaactt 43  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  6556568 cctaacaatttcggcattttaccaattgagctagaactt 6556606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 34830825 - 34830783
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaactt 43  Q
    ||||||||||||||||||||||||| ||||||| |||| ||||    
T  34830825 ccgacctaacaatttcggcattttatcagttgagctaggactt 34830783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 1241638 - 1241598
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  1241638 cctaacaatttcggcattttgccagttgagctaggacttct 1241598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 2314684 - 2314724
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  2314684 cctaacaatttcggcattttgccagttgagctaggacttct 2314724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 2711351 - 2711319
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttga 33  Q
    |||||||||||||||||| ||||||||||||||    
T  2711351 ccgacctaacaatttcggtattttaccagttga 2711319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 4128988 - 4128948
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||| |||||||||||||| |||| ||||||    
T  4128988 cctaacaatttcggtattttaccagttgagctaggacttct 4128948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 5603532 - 5603572
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||| |||||||||||||| |||||||| |||||||||||    
T  5603532 cctaataatttcggcatttttccagttgagctagaacttct 5603572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 5626144 - 5626188
Alignment:
Q  4 acctaacaatttcggcattttaccagttgaactagaacttctaga 48  Q
    ||||||||||||||||||||| |||||||| |||| | |||||||    
T  5626144 acctaacaatttcggcatttttccagttgagctaggatttctaga 5626188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 7098849 - 7098809
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||| ||||||||||||||| |||| ||||||    
T  7098849 cctaacaatttcgacattttaccagttgagctaggacttct 7098809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 8448227 - 8448267
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  8448227 cctaacaatttcggcattttgccagttgagctaggacttct 8448267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 8457031 - 8457071
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  8457031 cctaacaatttcggcattttgccagttgagctaggacttct 8457071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 33
Target Start/End: Original strand, 8487638 - 8487666
Alignment:
Q  5 cctaacaatttcggcattttaccagttga 33  Q
    |||||||||||||||||||||||||||||    
T  8487638 cctaacaatttcggcattttaccagttga 8487666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 12795104 - 12795144
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||||| |||||| |||| ||||||    
T  12795104 cctaacaatttcggcattttactagttgagctaggacttct 12795144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 13507395 - 13507435
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  13507395 cctaacaatttcggcattttcccagttgagctaggacttct 13507435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 16244454 - 16244414
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  16244454 cctaacaatttcggcattttgccagttgatctaggacttct 16244414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 17534608 - 17534648
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  17534608 cctaacaatttcggcattttgccagttgagctaggacttct 17534648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 18861852 - 18861892
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  18861852 cctaacaatttcggcattttgccagttgagctaggacttct 18861892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 26269285 - 26269245
Alignment:
Q  8 aacaatttcggcattttaccagttgaactagaacttctaga 48  Q
    ||||||||||||||||| |||||||| |||| |||||||||    
T  26269285 aacaatttcggcattttgccagttgagctaggacttctaga 26269245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 31205268 - 31205308
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  31205268 cctaacaatttcggcattttgccagttgagctaggacttct 31205308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 31642767 - 31642803
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaacta 37  Q
    ||||||||||||||||||||||||  |||||||||||    
T  31642767 ccgacctaacaatttcggcattttgtcagttgaacta 31642803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 33
Target Start/End: Original strand, 31747071 - 31747099
Alignment:
Q  5 cctaacaatttcggcattttaccagttga 33  Q
    |||||||||||||||||||||||||||||    
T  31747071 cctaacaatttcggcattttaccagttga 31747099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 32107920 - 32107960
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  32107920 cctaacaatttcggcattttgccagttgagctaggacttct 32107960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 33
Target Start/End: Original strand, 32643813 - 32643841
Alignment:
Q  5 cctaacaatttcggcattttaccagttga 33  Q
    |||||||||||||||||||||||||||||    
T  32643813 cctaacaatttcggcattttaccagttga 32643841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 1083553 - 1083511
Alignment:
Q  3 gacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||||| ||||||||||||| ||||||    
T  1083553 gacctaacaatttcggcattttgccagttgaactaggacttct 1083511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 31436003 - 31436041
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaactt 43  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  31436003 cctaacaatttcggcattttaccagttgaactaggactt 31436041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 17815224 - 17815265
Alignment:
Q  2 cgacctaacaatttcggcattttaccagttgaactagaactt 43  Q
    ||||||||||||||||||||||| ||||||||||||| ||||    
T  17815224 cgacctaacaatttcggcattttgccagttgaactaggactt 17815265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 3084323 - 3084367
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||||||| |||||||| |||| ||||||    
T  3084323 ccgacctaacaatttcggcattttgccagttgagctaggacttct 3084367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 18371389 - 18371349
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||||||||||    
T  18371389 cctaacaatttcggcattttgccagttgagctagaacttct 18371349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 24712135 - 24712091
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||||||| |||||||| |||| ||||||    
T  24712135 ccgacctaacaatttcggcattttgccagttgagctaggacttct 24712091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 1033534 - 1033577
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttctaga 48  Q
    |||||||||||||||||||| |||||||| |||| |||||||||    
T  1033534 cctaacaatttcggcattttgccagttgagctaggacttctaga 1033577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 28033235 - 28033192
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttctaga 48  Q
    ||||||||||||||||||||||||||||| |||| |||| ||||    
T  28033235 cctaacaatttcggcattttaccagttgagctaggacttttaga 28033192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 47462121 - 47462164
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttctaga 48  Q
    |||||||||||||||||||| |||||||| |||| |||||||||    
T  47462121 cctaacaatttcggcattttgccagttgagctaggacttctaga 47462164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 54907977 - 54908020
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttctaga 48  Q
    |||||||||||||||||||| |||||||| |||| |||||||||    
T  54907977 cctaacaatttcggcattttgccagttgagctaggacttctaga 54908020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 29334542 - 29334505
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactag 38  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  29334542 ccgacctaacaatttcggtattttgccagttgaactag 29334505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 1982604 - 1982564
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  1982604 cctaacaatttcggcattttgccagttgagctaggacttct 1982564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 4379350 - 4379310
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||||||||||  |||||||||||| ||||||    
T  4379350 cctaacaatttcggcattttgtcagttgaactaggacttct 4379310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 5397025 - 5397065
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  5397025 cctaacaatttcggcattttgccagttgagctaggacttct 5397065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 9569518 - 9569478
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  9569518 cctaacaatttcggcattttgccagttgagctaggacttct 9569478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 12821208 - 12821168
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  12821208 cctaacaatttcggcattttgccagttgagctaggacttct 12821168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 13389067 - 13389023
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||| ||||||| |||||||| |||| ||||||    
T  13389067 ccgacctaacaatttcagcattttgccagttgagctaggacttct 13389023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 23974727 - 23974767
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  23974727 cctaacaatttcggcattttgccagttgagctaggacttct 23974767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 28983779 - 28983735
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||| ||| |||||| |||||||| |||||||||||    
T  28983779 ccgacctaacaatgtcgacattttgccagttgagctagaacttct 28983735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 30044669 - 30044709
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  30044669 cctaacaatttcggcattttgccagttgagctaggacttct 30044709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 33
Target Start/End: Original strand, 31010030 - 31010058
Alignment:
Q  5 cctaacaatttcggcattttaccagttga 33  Q
    |||||||||||||||||||||||||||||    
T  31010030 cctaacaatttcggcattttaccagttga 31010058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 35828317 - 35828277
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  35828317 cctaacaatttcggcattttgccagttgagctaggacttct 35828277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 36751981 - 36752025
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||| |||||| || |||||||||||||||||| ||||||    
T  36751981 ccgacctaataatttcagcgttttaccagttgaactaggacttct 36752025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 42154223 - 42154263
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  42154223 cctaacaatttcggcattttgccagttgagctaggacttct 42154263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 42856606 - 42856566
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  42856606 cctaacaatttcggcattttgccagttgagctaggacttct 42856566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 43139996 - 43140039
Alignment:
Q  10 caatttcggcattttaccagttgaactagaacttctagaccattt 54  Q
    ||||||||||||||  |||||||| ||||||||||||||||||||    
T  43139996 caatttcggcatttg-ccagttgagctagaacttctagaccattt 43140039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 46488202 - 46488242
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  46488202 cctaacaatttcggcattttgccagttgagctaggacttct 46488242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 49535928 - 49535888
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  49535928 cctaacaatttcggcattttgccagttgagctaggacttct 49535888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 49882794 - 49882834
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  49882794 cctaacaatttcggcattttgccagttgagctaggacttct 49882834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 50779876 - 50779908
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaacta 37  Q
    |||||||||||||||||||| ||||||||||||    
T  50779876 cctaacaatttcggcattttgccagttgaacta 50779908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 51425373 - 51425333
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| | ||||||||||| ||||||    
T  51425373 cctaacaatttcggcattttgctagttgaactaggacttct 51425333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 40639645 - 40639599
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttctagacca 51  Q
    |||||||||||||| |||||||||||||| ||||||||||| |||||    
T  40639645 cctaacaatttcggtattttaccagttgagctagaacttctggacca 40639599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 15003675 - 15003631
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||||| |||||||| ||||||||||||| ||||||    
T  15003675 ccgacctaacaattttggcattttgccagttgaactaggacttct 15003631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 34397723 - 34397683
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| ||||||||||||| ||||||    
T  34397723 cctaacaatttcggcattttgccagttgaactaggacttct 34397683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 40559721 - 40559677
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||||||||||||||| ||||||| |||| ||||||    
T  40559721 ccgacctaacaatttcggcattttatcagttgagctaggacttct 40559677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 41464711 - 41464667
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||||||| |||||||| |||| ||||||    
T  41464711 ccgacctaacaatttcggcattttgccagttgagctaggacttct 41464667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 41921549 - 41921509
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||||||||||||||||||| |||| ||||||    
T  41921549 cctaacaatttcggcattttaccagttgagctaggacttct 41921509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 44037525 - 44037569
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||||||| |||||||| |||| ||||||    
T  44037525 ccgacctaacaatttcggcattttgccagttgagctaggacttct 44037569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 53669796 - 53669836
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||| |||||||||||||||| |||||||||||    
T  53669796 cctaacaatttcagcattttaccagttgagctagaacttct 53669836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 11312633 - 11312590
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttctaga 48  Q
    |||||||||||||||||||| |||||||| |||| |||||||||    
T  11312633 cctaacaatttcggcattttgccagttgagctaggacttctaga 11312590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 23525987 - 23526034
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttctaga 48  Q
    ||||||||||||||| | |||||||||| ||||||||| |||||||||    
T  23525987 ccgacctaacaattttgacattttaccaattgaactaggacttctaga 23526034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 28731894 - 28731847
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttctaga 48  Q
    ||||||||||||||||| ||||||  ||||||| ||||||||||||||    
T  28731894 ccgacctaacaatttcgacattttgtcagttgagctagaacttctaga 28731847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 44879318 - 44879361
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttctaga 48  Q
    ||||||||||||| |||||| ||||||||||||| |||||||||    
T  44879318 cctaacaatttcgacattttgccagttgaactaggacttctaga 44879361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 11250007 - 11249965
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaactt 43  Q
    |||||||||||||||| |||||||||||||||| |||| ||||    
T  11250007 ccgacctaacaatttctgcattttaccagttgagctaggactt 11249965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 36540148 - 36540107
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttcta 46  Q
    ||||||||||||| |||||||||| ||||||||| |||||||    
T  36540148 cctaacaatttcgacattttaccacttgaactaggacttcta 36540107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 33
Target Start/End: Original strand, 1218456 - 1218484
Alignment:
Q  5 cctaacaatttcggcattttaccagttga 33  Q
    |||||||||||||||||||||||||||||    
T  1218456 cctaacaatttcggcattttaccagttga 1218484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 2687602 - 2687562
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  2687602 cctaacaatttcggcattttgccagttgagctaggacttct 2687562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 2789063 - 2789103
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||| |||||||||||||| ||||||||||||| ||||||    
T  2789063 cctaataatttcggcattttgccagttgaactaggacttct 2789103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 3917809 - 3917769
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  3917809 cctaacaatttcggcattttgccagttgagctaggacttct 3917769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 4039788 - 4039836
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttctagac 49  Q
    ||||||||| ||||||| |||||||| |||||| ||| |||||||||||    
T  4039788 ccgacctaataatttcgacattttactagttgagctaaaacttctagac 4039836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 4232262 - 4232302
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  4232262 cctaacaatttcggcattttgccagttgagctaggacttct 4232302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 4833194 - 4833234
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  4833194 cctaacaatttcggcattttgccagttgagctaggacttct 4833234  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 6583320 - 6583360
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  6583320 cctaacaatttcggcattttgccagttgagctaggacttct 6583360  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 8381122 - 8381082
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  8381122 cctaacaatttcggcattttgccagttgagctaggacttct 8381082  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 12948853 - 12948813
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||| ||||||||||||||| |||| ||||||    
T  12948853 cctaacaatttcgtcattttaccagttgagctaggacttct 12948813  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 13525212 - 13525172
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  13525212 cctaacaatttcggcattttgccagttgagctaggacttct 13525172  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 18271624 - 18271580
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||||||||||||||  |||||||  ||||||||||    
T  18271624 ccgacctaacaatttcggcattttgtcagttgagttagaacttct 18271580  T

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Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 24910373 - 24910413
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  24910373 cctaacaatttcggcattttgccagttgagctaggacttct 24910413  T

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Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 32591015 - 32590975
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||| ||||||||||||||| |||| ||||||    
T  32591015 cctaacaatttcgacattttaccagttgagctaggacttct 32590975  T

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Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 32961063 - 32961103
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  32961063 cctaacaatttcggcattttgccagttgagctaggacttct 32961103  T

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Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 35069356 - 35069324
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaacta 37  Q
    |||||||||||||||||||| ||||||||||||    
T  35069356 cctaacaatttcggcattttgccagttgaacta 35069324  T

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Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 37312571 - 37312531
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||| |||||||||||||| |||| ||||||    
T  37312571 cctaacaatttcggtattttaccagttgagctaggacttct 37312531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 46311528 - 46311568
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||| ||||||||||||||| |||| ||||||    
T  46311528 cctaacaatttcgacattttaccagttgagctaggacttct 46311568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 46838812 - 46838852
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  46838812 cctaacaatttcggcatttttccagttgagctaggacttct 46838852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 47410833 - 47410877
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||||||| |||||| |||||||| |||| ||||||    
T  47410833 ccgacctaacaatttcgacattttgccagttgagctaggacttct 47410877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 48191137 - 48191097
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||||||||||| ||||||| |||| ||||||    
T  48191137 cctaacaatttcggcattttagcagttgagctaggacttct 48191097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 50238925 - 50238965
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||| ||||||||||||||| |||| ||||||    
T  50238925 cctaacaatttcgacattttaccagttgagctaggacttct 50238965  T

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Target: scaffold0795 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0795
Description:

Target: scaffold0795; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 1107 - 1075
Alignment:
Q  1 ccgacctaacaatttcggcattttaccagttga 33  Q
    |||||||||||||||||||||||||||||||||    
T  1107 ccgacctaacaatttcggcattttaccagttga 1075  T

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Target: scaffold0008 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 39398 - 39438
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    ||||||||||||||||||||||||||||| |||| ||||||    
T  39398 cctaacaatttcggcattttaccagttgagctaggacttct 39438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0633 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 3879 - 3918
Alignment:
Q  4 acctaacaatttcggcattttaccagttgaactagaactt 43  Q
    |||||||||||||||||||||||||||||| |||| ||||    
T  3879 acctaacaatttcggcattttaccagttgagctaggactt 3918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0457 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0457
Description:

Target: scaffold0457; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 6822 - 6779
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttctaga 48  Q
    |||||||||||||||||||| |||||||| |||| |||||||||    
T  6822 cctaacaatttcggcattttgccagttgagctaggacttctaga 6779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 9410 - 9370
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  9410 cctaacaatttcggcattttgccagttgagctaggacttct 9370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0402 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 1326 - 1366
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  1326 cctaacaatttcggcattttgccagttgagctaggacttct 1366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 9032 - 9071
Alignment:
Q  9 acaatttcggcattttaccagttgaactagaacttctagac 49  Q
    ||||||||||||||| ||||||||| |||||||||||||||    
T  9032 acaatttcggcattt-accagttgagctagaacttctagac 9071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 1143 - 1183
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  1143 cctaacaatttcggcattttgccagttgagctaggacttct 1183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 90612 - 90572
Alignment:
Q  5 cctaacaatttcggcattttaccagttgaactagaacttct 45  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  90612 cctaacaatttcggcattttgccagttgagctaggacttct 90572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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