View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18637_low_13 (Length: 290)
Name: NF18637_low_13
Description: NF18637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18637_low_13 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 5379322 - 5379611
Alignment:
| Q |
1 |
tgagagagattgtgataaatatggtttgaatttggttacaagactttattatacaattatattatataagcatgttggtattaaatgttaattgtacttg |
100 |
Q |
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| T |
5379322 |
tgagagagtttgtgataaatatggtttgaatttggttacaagactttattatacaattatattatataagcatgttggtattaaatgttaattgtacttg |
5379421 |
T |
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| Q |
101 |
tagggtaagctaagggtattgaaagtcttcttgtggagcatatatctatcatacatggtctttgagacttgaattgagagttagttttaagcaaggtagt |
200 |
Q |
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| T |
5379422 |
tagggtaagctaagggtattgaaagtcttcttgtggagcatatatctatcatacatggtctttgagacttgaattgagagttagttttaagcaaggtagt |
5379521 |
T |
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| Q |
201 |
ttttgtggcattgttatcggtgacgatgagtcgagagcagcagaagagggggaagcaagagaaagtctgtgatggtgctgagaaggttat |
290 |
Q |
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| T |
5379522 |
ttttgtggcattgttatcggtgacgatgagtcgagagcagcagaagagggggaagcaagagaaaggctgtgatggtgctgagaaggttat |
5379611 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 43262218 - 43262185
Alignment:
| Q |
19 |
atatggtttgaatttggttacaagactttattat |
52 |
Q |
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| T |
43262218 |
atatggtttggatttggttacaagactttattat |
43262185 |
T |
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