View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18637_low_16 (Length: 264)
Name: NF18637_low_16
Description: NF18637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18637_low_16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 10 - 264
Target Start/End: Original strand, 41248731 - 41248980
Alignment:
| Q |
10 |
attatacttttaaatcggtcacgccatcgtcaagatggaacaacattacaaggctgttgtctcccgtcaaatcaaaaagacgatccttctattaagtttg |
109 |
Q |
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| T |
41248731 |
attatacttttaaatcggtcacgccatcgtcaagatggaacaacattacaaggctgttgtctcccgtcaaattaaaaacacgatcctt-----aagtttg |
41248825 |
T |
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| Q |
110 |
agatggtaaatggtagccatgaattagagaaaaatacagaagcaagtgagaaaaatgccaccgaatataagtttgttgtagttacacctaaatcacaaat |
209 |
Q |
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| T |
41248826 |
agatggtaaatggtagccatgaattagagaaaaatacagtcgcaagtgagaaaaatgccaccgaatataagtttgttgtagttacacctaaatcacaaat |
41248925 |
T |
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| Q |
210 |
gtacaaattgagaaaaatatagaaaactccttttgaaagttgagcactacaacac |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41248926 |
gtacaaattgagaaaaatatagaaaactccttttgaaagttgagcactacaacac |
41248980 |
T |
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