View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18637_low_20 (Length: 227)
Name: NF18637_low_20
Description: NF18637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18637_low_20 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 124; Significance: 6e-64; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 31636509 - 31636294
Alignment:
| Q |
18 |
aacctcttcttcatccatcttcttttctctttttctccgtgatacttttaatgatcttcatcatcaatattccaacgtgtatgtgcgatgattacacaga |
117 |
Q |
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| T |
31636509 |
aacctcttcttcatccatcttcttttctctttttctccgtgatgcttttgatgatcttcatcatcaatattccaacgtgtatgtgcaatgattacacaga |
31636410 |
T |
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| Q |
118 |
ctgcaacgaagcttttgactgtgga---gacagtgtcacaaacctcaagtatccattctggggaaaaaacagaggaaaggaatgtg---gtttttctgat |
211 |
Q |
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| T |
31636409 |
ctgcaacgaagcttttgaatgcggaagtagcagcatcacaaacctcaagtatccattctggggaaataacagagaagagcgttgtggtagtgtttctgat |
31636310 |
T |
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| Q |
212 |
cctaatatggagctta |
227 |
Q |
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| T |
31636309 |
cctaatatggagctta |
31636294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 63 - 227
Target Start/End: Complemental strand, 31621469 - 31621299
Alignment:
| Q |
63 |
ttttaatgatcttcatcatcaatattccaacgtgtatgtgcgatgattacacagactgcaacgaagcttttgactgtgga---gacagtgtcacaaacct |
159 |
Q |
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| T |
31621469 |
ttttgatgatcttcatcatcaatattccaacgtgtatgtgcaatgattacacagactgcaacgaagcttttgaatgcggaagtagcagcatcacaaacct |
31621370 |
T |
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| Q |
160 |
caagtatccattctggggaaaaaacagaggaaaggaatgtg---gtttttctgatcctaatatggagctta |
227 |
Q |
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| T |
31621369 |
caagtatccattctggggaaataacagagaagagcgttgtggtagtgtttctgatcctaatatggagctta |
31621299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 31597496 - 31597433
Alignment:
| Q |
164 |
tatccattctggggaaaaaacagaggaaaggaatgtggtttttctgatcctaatatggagctta |
227 |
Q |
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| T |
31597496 |
tatccattctggggagaaaatagaggaaattattgtggtgtttccgatcctaatatgaagctta |
31597433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 31616718 - 31616686
Alignment:
| Q |
77 |
atcatcaatattccaacgtgtatgtgcgatgat |
109 |
Q |
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| T |
31616718 |
atcatcaatattccaacgtgtatgtgtgatgat |
31616686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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