View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18637_low_24 (Length: 211)
Name: NF18637_low_24
Description: NF18637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18637_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 15241747 - 15241941
Alignment:
| Q |
1 |
ttaatgatgttcttttgttgcagtaaatcgtttacaatattgctgtttttcaatactctctattagcataaaatgttgtcaaataggtctatatatagtg |
100 |
Q |
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| T |
15241747 |
ttaatgatgttcttttgttgcagtaaatcgtttacaatgttg---ttttgcaatactctctattagcacaaaatgttgtcaaataggtctata----gtg |
15241839 |
T |
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| Q |
101 |
gtgtggtgtgtagttaaatttgaacaaactatcattttccgtgatctgcatttgaaaacactgatattttgttctgtgttttggtcgagtcctttgcttc |
200 |
Q |
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| T |
15241840 |
gtgtggtgtgtagttaaatttgaacaaactatcattttccgtgatctgcatttgaaaacactgatattttgttctgtgttttggtcaagtcttttgattc |
15241939 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 165
Target Start/End: Original strand, 34227386 - 34227444
Alignment:
| Q |
107 |
tgtgtagttaaatttgaacaaactatcattttccgtgatctgcatttgaaaacactgat |
165 |
Q |
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| T |
34227386 |
tgtgtagtgaaatttgaacaaactgttattttccatgatcggcaattgacaacactgat |
34227444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 33651744 - 33651792
Alignment:
| Q |
107 |
tgtgtagttaaatttgaacaaactatcattttccgtgatctgcatttga |
155 |
Q |
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| T |
33651744 |
tgtgtagctaaatttgaacaaactactattttctgtgatctgcaattga |
33651792 |
T |
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