View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18637_low_4 (Length: 439)
Name: NF18637_low_4
Description: NF18637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18637_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 17 - 429
Target Start/End: Complemental strand, 54980494 - 54980079
Alignment:
| Q |
17 |
aaattttattcgaacttaactgaatcaataccaaagaagacgcttctgagatttccaaaggtaactcagctgagaatttattccaagttgagtttttcta |
116 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54980494 |
aaattttattcgaacttaactgaatcaataccgaagaagaagcttctgagatttccaaaggtaactcagctgagaatttattccaagttgagtttttcta |
54980395 |
T |
|
| Q |
117 |
cacaataacaacatgttccacagttttattcgtttgcttcaagtaccttatatcttctccaagaacagaagctttatccatttgtatgtgcaggaatttg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54980394 |
cacaataacaacatgttccacagttttattcgtttgcttcaagtaccttatatcttctccaagaacagaagctttatccatttgtatgtgcaggaatttg |
54980295 |
T |
|
| Q |
217 |
aaaatttgtggccgtcccaaacatgtagctcggttggtgacgaagagatcgatagttcaaagttcaaaccttgttaactaacataatcactaatttacta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54980294 |
aaaatttgtggccgtcccaaacatgtagctcggttggtgacgaagagatcgatagttcaaagttcaaaccttgttaactaacataatcactaatttacta |
54980195 |
T |
|
| Q |
317 |
acatttgctgataaaaacaaattttagaactataagaagtttaagtctgcagttcaatccctgata---actaacataaccaccaataactaatatacaa |
413 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
54980194 |
acatttgctgataaaaacaaattttagaattataagaagtttaagtctgcagttcaatccctgataactactaacataaccaccaataactaatatacaa |
54980095 |
T |
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| Q |
414 |
atttacatactgatga |
429 |
Q |
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| T |
54980094 |
atttacatactgatga |
54980079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 204
Target Start/End: Complemental strand, 2377513 - 2377458
Alignment:
| Q |
149 |
tttgcttcaagtaccttatatcttctccaagaacagaagctttatccatttgtatg |
204 |
Q |
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||||||| |||||||||||| |||||||||||||||||||||| ||||| |||||| |
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| T |
2377513 |
tttgctttaagtaccttatagcttctccaagaacagaagctttgtccatctgtatg |
2377458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 2398878 - 2398801
Alignment:
| Q |
17 |
aaattttattcgaacttaactgaatcaataccaaagaagacgcttctgagatttccaaaggtaactcagctgagaatt |
94 |
Q |
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||||| ||||||||||||||||||| | ||||||||| |||||||||||||||| ||||||||| ||||||||| |
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| T |
2398878 |
aaattctattcgaacttaactgaattgaaaccaaagaactagcttctgagatttccattggtaactcacctgagaatt |
2398801 |
T |
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