View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18637_low_5 (Length: 419)
Name: NF18637_low_5
Description: NF18637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18637_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 8 - 402
Target Start/End: Complemental strand, 38026695 - 38026287
Alignment:
| Q |
8 |
cgaagaatatgcaggccatgaacaattgcagttaattcgacaatagtgttggatgtgtacccatgatggtcaaaaaagctaaaaattcactcccattcat |
107 |
Q |
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| T |
38026695 |
cgaacaatatgcaggccatgaacaattgcagttaattcgacaatagtgttggatgtgtacccatgatggtcaaaaaagctaaaaattcactcccattcat |
38026596 |
T |
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| Q |
108 |
gctcctaacgaattgcttcgggagctaccatccacattgaacttgactaggttgggaccaaa--atatgacagtttagtttttacttcatccccttaatt |
205 |
Q |
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| T |
38026595 |
gctcctaacgaattgcttcgggagctaccatccacattgaacttgactaggttgggaccaaaatatatgacagtttagtttttacttcatccccttaatt |
38026496 |
T |
|
| Q |
206 |
atttgtca------------atggacctagctaaattcaagatgagttattaacccatctagagttttgaaaaatcacaacatttcgattttcgagcatg |
293 |
Q |
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| T |
38026495 |
atttgtcaatttcatcacagatggacctagctaaattcaagatgagttattaacccatctagagttttgaaaaatcacaacatttcgattttcgagcatg |
38026396 |
T |
|
| Q |
294 |
ccatatgtttttatccattcttataagttgggttgtgaagccagccatatgggagaaatcaaggtgtggccaggcaagacctacacatcagttacatatg |
393 |
Q |
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| T |
38026395 |
ccatatgtttttatccattcttataagttgggttgtgaaaccagccatatgggagaaatcaaggtgtggccaggcaagacctacacatcagttacatatg |
38026296 |
T |
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| Q |
394 |
gctagaagg |
402 |
Q |
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| T |
38026295 |
gctagaagg |
38026287 |
T |
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