View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18637_low_7 (Length: 383)
Name: NF18637_low_7
Description: NF18637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18637_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 4400810 - 4400446
Alignment:
| Q |
1 |
tgaaaagcttgtaggatgcagtttgaaattcatgtcatgttctttttaaagtttatgatatcaatctataaccttttagtagcattattcaaactaaatt |
100 |
Q |
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| T |
4400810 |
tgaaaagcttgtaggatgcagtttgaaattcatgtcatgttctttttaaagtttatgatatcaatctataaccttttagtagcattattcaaactaaatt |
4400711 |
T |
|
| Q |
101 |
ttatatacttgagactacttatccttttcattaccgagtaggatagacagtgatatttgaggaactaaattcagggtttgttgttaattattctttttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4400710 |
ttatatacttgagactacttatccttttcattactgagtaggatagacagtgatatttgaggaactaaattcagggtttgttgttaattattctttttca |
4400611 |
T |
|
| Q |
201 |
aacctgctaattagagagtgatatttgaggagctaaataaagggtttattgttaattattctttttataatctgcttacaagtctatgtgataaaaacat |
300 |
Q |
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| T |
4400610 |
aacctgctaattagagagtgatatttgaggagctaaattaagggtttattgttaattattctttttataatctgcttacaagtctatgtgataaaaacat |
4400511 |
T |
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| Q |
301 |
tagttcacatgtgtttgctagctgcataattttattgaggaaaaaagcacaaactaagagcttga |
365 |
Q |
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| T |
4400510 |
tagttcacatgtgtttgctagctgcataattttattgaggaaaaaagcacaaactaagagcttga |
4400446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 28 - 278
Target Start/End: Original strand, 4526941 - 4527191
Alignment:
| Q |
28 |
attcatgtcatgttctttttaaagtttatgatatcaatctataaccttttagtagcattattcaaactaaattttatatacttgagactacttatccttt |
127 |
Q |
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|||||||||| | |||||| ||||| ||||||||||||| ||||| ||||||||| ||||||||||||||||||||| |||||||||||||| | ||| |
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| T |
4526941 |
attcatgtcacggtcttttaaaagtatatgatatcaatccataacattttagtagacatattcaaactaaattttatatgcttgagactacttaccattt |
4527040 |
T |
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| Q |
128 |
tcattaccgagtaggatagacagtgatatttgaggaactaaattcagggtttgttgttaattattctttttcaaacctgctaattagagagtgatatttg |
227 |
Q |
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|||||| ||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
4527041 |
tcattattgagtaggatagacagtgatgtatgaggaactaaattaagggtttgttgttaattattctttttataatctgctaattagagagtgatatttg |
4527140 |
T |
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| Q |
228 |
aggagctaaataaagggtttattgttaattattctttttataatctgctta |
278 |
Q |
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||||||||| | ||||||||||||||||||||||||||||||||| |||| |
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| T |
4527141 |
aggagctaagttcagggtttattgttaattattctttttataatcttctta |
4527191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 144 - 367
Target Start/End: Original strand, 4527125 - 4527348
Alignment:
| Q |
144 |
tagacagtgatatttgaggaactaaattcagggtttgttgttaattattctttttcaaacctgctaattagagagtgatatttgaggagctaaataaagg |
243 |
Q |
| |
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|||| ||||||||||||||| |||| |||||||||| |||||||||||||||||| || || || ||| ||||||||||||||||||||||| || |
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| T |
4527125 |
tagagagtgatatttgaggagctaagttcagggtttattgttaattattctttttataatcttcttattcgagagtgatatttgaggagctaacctcggg |
4527224 |
T |
|
| Q |
244 |
gtttattgttaattattctttttataatctgcttacaagtctatgtgataaaaacattagttcacatgtgtttgctagctgcataattttattgaggaaa |
343 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||| |||||| |
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| T |
4527225 |
gcttattgttaattattctttttataatctgcttacaagtctatgtgataaaaacattaaatcatttgtgtttgctagctgcactattttatcgaggaac |
4527324 |
T |
|
| Q |
344 |
aaagcacaaactaagagcttgatg |
367 |
Q |
| |
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|||||||||||| |||| |||||| |
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| T |
4527325 |
aaagcacaaacttagagtttgatg |
4527348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 92 - 355
Target Start/End: Original strand, 4495866 - 4496113
Alignment:
| Q |
92 |
aactaaattttatatacttgagactacttatccttttcattaccgagtaggatagacagtgatatttgaggaactaaattcagggtttgttgttaattat |
191 |
Q |
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|||||||||| ||||||||||||||||||| | || ||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
4495866 |
aactaaatttcatatacttgagactacttaccattatcattactgagtaggacagacagtgatatttgaggaactaaattcagagtttgttgttaaatat |
4495965 |
T |
|
| Q |
192 |
tctttttcaaacctgctaattagagagtgatatttgaggagctaaataaagggtttattgttaattattctttttataatctgcttacaagtctatgtga |
291 |
Q |
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| T |
4495966 |
tctttcttgaatctgctaaatagagagtgatatttgaggagctaaattcagggtttactgttaattat----------------ttacaagtcgatgtga |
4496049 |
T |
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| Q |
292 |
taaaaacattagttcacatgtgtttgctagctgcataattttattgaggaaaaaagcacaaact |
355 |
Q |
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| T |
4496050 |
taaaaacattagttcacttgggcttgctagttgcattattttattgaggaacaaagcacaaact |
4496113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 4495601 - 4495668
Alignment:
| Q |
18 |
gcagtttgaaattcat--gtcatgttctttttaaagtttatgatatcaatctataaccttttagtagc |
83 |
Q |
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||||||| |||||||| |||||| |||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
4495601 |
gcagtttcaaattcatatgtcatggtcttttaaaagtgtatgatatcaatctataaccttttagtagc |
4495668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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