View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18637_low_8 (Length: 374)

Name: NF18637_low_8
Description: NF18637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18637_low_8
NF18637_low_8
[»] chr8 (14 HSPs)
chr8 (11-374)||(2794805-2795173)
chr8 (11-374)||(2876543-2876912)
chr8 (11-374)||(3143897-3144272)
chr8 (11-374)||(2890993-2891366)
chr8 (11-202)||(14388691-14388891)
chr8 (105-201)||(3158623-3158719)
chr8 (128-202)||(3495223-3495297)
chr8 (11-65)||(39188960-39189014)
chr8 (128-184)||(3500374-3500430)
chr8 (105-202)||(1790878-1790975)
chr8 (14-96)||(2882596-2882678)
chr8 (25-96)||(3495111-3495182)
chr8 (11-96)||(3158737-3158822)
chr8 (344-374)||(8627646-8627676)
[»] chr7 (1 HSPs)
chr7 (128-201)||(18847756-18847829)


Alignment Details
Target: chr8 (Bit Score: 116; Significance: 6e-59; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 11 - 374
Target Start/End: Complemental strand, 2795173 - 2794805
Alignment:
Q  11 atcatcaagttatgtatttacttttacgaatgatactagctcaatctcgtaatacatggttgaattaggaggaaccaaggccaatttaggttgaga---- 106  Q
    ||||||||||||| ||||||| |||||||| ||||||||||||| ||| ||||||| ||||||||||||||||||||  |||||||   | |||||        
T  2795173 atcatcaagttatttatttacctttacgaacgatactagctcaacctcataatacacggttgaattaggaggaaccactgccaattcctgctgagactct 2795074  T
Q  107 -----accaaaagcatatttaggccaaatagtcaacaaagctacctcacccttcttcatggtcattacagctttatcaagccccttaatcacttgctctg 201  Q
         |||||||||||||| |||   |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||    
T  2795073 gatgaaccaaaagcatattcaggtgtaatagtcaacaaagctacctcacccttcttcatggtcagtacagctttatcaagcccatcaatcacttgctctg 2794974  T
Q  202 cccaaactaataaacaaacattgacttcagttgatataaaaagaaattaatgtgagagggtaaagcattgggaaaattctcattactctcatttgtttta 301  Q
    | |||  ||   || || |||| |||| |||||||||||||| ||||||  |||||||||| || || ||| ||||||   ||||| ||||| |||||||    
T  2794973 ctcaa--ta--caaaaagcattcactttagttgatataaaaacaaattatggtgagagggtgaaaca-tggaaaaattaaaattaccctcatctgtttta 2794879  T
Q  302 aatt-aaatggctccgcttgatcatcgtcaccatggcctttggtaaaaaatacagtgccatcttgcagcttacc 374  Q
    |||| |||  ||||| ||| |||| | |||| || ||| ||  |||||||||||||||||||||||||||||||    
T  2794878 aattcaaacagctccacttcatcaccatcactatagcccttcttaaaaaatacagtgccatcttgcagcttacc 2794805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 11 - 374
Target Start/End: Original strand, 2876543 - 2876912
Alignment:
Q  11 atcatcaagttatgtatttacttttacgaatgatactagctcaatctcgtaatacatggttgaattaggaggaaccaaggccaatttaggttgaga---- 106  Q
    ||||||||||||| ||| ||| |||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||  |||||||   | |||||        
T  2876543 atcatcaagttatttatatacctttacgaatgatactagctcaacctcataatacacggttgaattaggaggaaccactgccaattcctgctgagactct 2876642  T
Q  107 -----accaaaagcatatttaggccaaatagtcaacaaagctacctcacccttcttcatggtcattacagctttatcaagccccttaatcacttgctctg 201  Q
         |||||||||||||| ||||  |||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||| | ||||||||||||||    
T  2876643 gatgaaccaaaagcatattcaggcgcaatagtcaacaaagctacctcatccttcttcatggtcagtacagctctatcaagcccatcaatcacttgctctg 2876742  T
Q  202 cccaaactaataaacaaacattgacttcagttgatataaaaagaaattaatgtgagagggtaaagcattgggaaaattctcattactctcatttgtttta 301  Q
    | |||  ||   || || |||| |||| |||||||||||||| ||||||  |||||||||| || ||| |||||||||   ||||| ||| | |||||||    
T  2876743 ctcaa--ta--caaaaagcattcactttagttgatataaaaacaaattatggtgagagggtgaaacatggggaaaattaaaattaccctcgtctgtttta 2876838  T
Q  302 aatt-aaatggctccgcttgatcatcgtcaccatggcctttggtaaaaaatacagtgccatcttgcagcttacc 374  Q
    |||| |||  ||||| ||| |||| | |||| ||  || ||  |||||||||||||||||||||||||||||||    
T  2876839 aattcaaacagctccacttcatcaccatcactatatcccttcttaaaaaatacagtgccatcttgcagcttacc 2876912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 11 - 374
Target Start/End: Complemental strand, 3144272 - 3143897
Alignment:
Q  11 atcatcaagttatgtatttacttttacgaatgatactagctcaatctcgtaatacatggttgaattaggaggaaccaaggccaatttaggttgaga---- 106  Q
    ||||||||||||| ||||||| |||||||| ||||||||||||| ||| ||||||| ||||||||||||||||||||  |||||||   | |||||        
T  3144272 atcatcaagttatttatttacctttacgaacgatactagctcaacctcataatacacggttgaattaggaggaaccactgccaattcctgctgagactct 3144173  T
Q  107 -----accaaaagcatatttaggccaaatagtcaacaaagctacctcacccttcttcatggtcattacagctttatcaagccccttaatcacttgctctg 201  Q
         |||||||||||||| ||||  |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| | ||||||||||||||    
T  3144172 gatgaaccaaaagcatattcaggcgtaatagtcaacaaagctacctcacctttcttcatggtcagtacagctttatcaagcccatcaatcacttgctctg 3144073  T
Q  202 cccaaactaataaacaaacattgacttcagttgatataaaaagaaattaatgtgagagggtaaagcattgggaaaattctcattactctcatttgtttta 301  Q
    | |||  ||   || || |||| |||| | ||||| |||||| |||| |  |||||||||| || |||||||||||||   ||||| ||| | |||||||    
T  3144072 ctcaa--ta--caaaaagcattcactttatttgatttaaaaacaaatgatggtgagagggtgaaacattgggaaaattaaaattaccctcgtctgtttta 3143977  T
Q  302 aatt-aaatggctccgcttgatcatcgtcacc------atggcctttggtaaaaaatacagtgccatcttgcagcttacc 374  Q
    |||| |||  | ||||||| |||||| |||||      ||  || ||| | |||||||||||||||||||||||||||||    
T  3143976 aattcaaacagatccgcttcatcatcatcaccatcattatatcccttgttcaaaaatacagtgccatcttgcagcttacc 3143897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 11 - 374
Target Start/End: Original strand, 2890993 - 2891366
Alignment:
Q  11 atcatcaagttatgtatttacttttacgaatgatactagctcaatctcgtaatacatggttgaattaggaggaaccaaggccaatttaggttgaga---- 106  Q
    ||||||||||||| ||||||| |||||||| ||||||||||||| ||| ||||||  ||||||||||||||||||||  |||||||   | |||||        
T  2890993 atcatcaagttatttatttacctttacgaacgatactagctcaacctcataatac--ggttgaattaggaggaaccactgccaattcctgctgagactct 2891090  T
Q  107 -----accaaaagcatatttaggccaaatagtcaacaaagctacctcacccttcttcatggtcattacagctttatcaagccccttaatcacttgctctg 201  Q
         |||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||    
T  2891091 gatgaaccaaaagcatattcaggcgtaatagtcaacaaagctacctcacccttcttcatggtcagtacagctttatcaagcccatcaatcacttgctctg 2891190  T
Q  202 cccaaactaataaacaaacattgacttcagttgatataaaaagaaattaatgtgagagggtaaagcattgggaaaattctcattactctcatttgtttta 301  Q
    | |||  ||   || || |||| |||| | ||||| |||||| |||| |  |||||||||| || |||||||||||||   ||||| ||| | |||||||    
T  2891191 ctcaa--ta--caaaaagcattcactttatttgatttaaaaacaaatgatggtgagagggtgaaacattgggaaaattaaaattaccctcgtctgtttta 2891286  T
Q  302 aatt-aaatggctccgcttgatcatcgtcacc------atggcctttggtaaaaaatacagtgccatcttgcagcttacc 374  Q
    |||| |||  | ||||||| |||||| |||||      ||  || ||| | |||||||||||||||||||||||||||||    
T  2891287 aattcaaacagatccgcttcatcatcatcaccatcattatatcccttgttcaaaaatacagtgccatcttgcagcttacc 2891366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 14388691 - 14388891
Alignment:
Q  11 atcatcaagttatgtatttacttttacgaatgatactagctcaatctcgtaatacatggttgaattaggaggaaccaaggccaatttaggttgaga---- 106  Q
    ||||| ||||||| ||||||| |||| ||| ||||||| ||||| ||| ||||||| ||||||||||||||| ||||  |||||||   | |||||        
T  14388691 atcattaagttatttatttacctttatgaacgatactaactcaacctcataatacaaggttgaattaggagggaccactgccaattcctgctgagactca 14388790  T
Q  107 -----accaaaagcatatttaggccaaatagtcaacaaagctacctcacccttcttcatggtcattacagctttatcaagccccttaatcacttgctctg 201  Q
         |||||||||||| |  ||   |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||    
T  14388791 gatgaaccaaaagcatactcgggtgcaatagtcaacaatgctacctcacccttcttcatggtcattacagctttatcgagcccatcaatcacttgctctg 14388890  T
Q  202 c 202  Q
    |    
T  14388891 c 14388891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 105 - 201
Target Start/End: Complemental strand, 3158719 - 3158623
Alignment:
Q  105 gaaccaaaagcatatttaggccaaatagtcaacaaagctacctcacccttcttcatggtcattacagctttatcaagccccttaatcacttgctctg 201  Q
    ||||||||||||||||  |||  |||||||||||||||||||||||||||||||||||||||||||||| ||| |||| | | ||||||||||||||    
T  3158719 gaaccaaaagcatattgtggcgcaatagtcaacaaagctacctcacccttcttcatggtcattacagctatattaagcacatcaatcacttgctctg 3158623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 128 - 202
Target Start/End: Original strand, 3495223 - 3495297
Alignment:
Q  128 aatagtcaacaaagctacctcacccttcttcatggtcattacagctttatcaagccccttaatcacttgctctgc 202  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||| | |||||||||||||||    
T  3495223 aatagtcaacaatgctacctcacccttcttcatggtcattacagctctatcgagcccatcaatcacttgctctgc 3495297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 39188960 - 39189014
Alignment:
Q  11 atcatcaagttatgtatttacttttacgaatgatactagctcaatctcgtaatac 65  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  39188960 atcatcaagttatgtatttacctttacgaatgatactagctcaatctcgtaatac 39189014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 3500374 - 3500430
Alignment:
Q  128 aatagtcaacaaagctacctcacccttcttcatggtcattacagctttatcaagccc 184  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  3500374 aatagtcaacaacgctacctcacccttcttcatggtcattacagctctatcaagccc 3500430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 105 - 202
Target Start/End: Complemental strand, 1790975 - 1790878
Alignment:
Q  105 gaaccaaaagcatatttaggccaaatagtcaacaaagctacctcacccttcttcatggtcattacagctttatcaagccccttaatcacttgctctgc 202  Q
    ||||||||| |||| |||||   |||||||||| | ||||||||||||||||||||  ||||||||||| ||||||||||  || |||||||| ||||    
T  1790975 gaaccaaaaccatacttaggtgcaatagtcaacgatgctacctcacccttcttcatactcattacagctctatcaagccctctagtcacttgcgctgc 1790878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 2882596 - 2882678
Alignment:
Q  14 atcaagttatgtatttacttttacgaatgatactagctcaatctcgtaatacatggttgaattaggaggaaccaaggccaatt 96  Q
    |||||||||| ||||||| ||||| |||||| ||||||| | ||| ||| ||| ||||||||||||||||||||  |||||||    
T  2882596 atcaagttatttatttacctttacaaatgatgctagctcgacctcataacacaaggttgaattaggaggaaccactgccaatt 2882678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 3495111 - 3495182
Alignment:
Q  25 tatttacttttacgaatgatactagctcaatctcgtaatacatggttgaattaggaggaaccaaggccaatt 96  Q
    ||||||| |||| ||||||||||| ||||| ||| ||||||| ||||||||||||||| ||||  |||||||    
T  3495111 tatttacctttatgaatgatactaactcaacctcataatacaaggttgaattaggagggaccactgccaatt 3495182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 3158822 - 3158737
Alignment:
Q  11 atcatcaagttatgtatttacttttacgaatgatactagctcaatctcgtaatacatggttgaattaggaggaaccaaggccaatt 96  Q
    |||| |||||||| || | || ||||| || ||||||||||||| ||  ||||||| ||||||||||||||||||||  |||||||    
T  3158822 atcaccaagttatttagtaacctttacaaacgatactagctcaacctgataatacaaggttgaattaggaggaaccactgccaatt 3158737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 344 - 374
Target Start/End: Complemental strand, 8627676 - 8627646
Alignment:
Q  344 taaaaaatacagtgccatcttgcagcttacc 374  Q
    |||||||||||||||||||||||||||||||    
T  8627676 taaaaaatacagtgccatcttgcagcttacc 8627646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 18847756 - 18847829
Alignment:
Q  128 aatagtcaacaaagctacctcacccttcttcatggtcattacagctttatcaagccccttaatcacttgctctg 201  Q
    |||| |||| || |||||||||||||||||||| |||| |||||||||||||||||| | ||| ||||| ||||    
T  18847756 aataatcaataatgctacctcacccttcttcatagtcaatacagctttatcaagcccatcaatgacttgttctg 18847829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University