View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18637_low_9 (Length: 366)
Name: NF18637_low_9
Description: NF18637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18637_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 92 - 189
Target Start/End: Complemental strand, 32845696 - 32845599
Alignment:
| Q |
92 |
taaattgagttagaggaagatgtcgttttgcacacgtccgtgacatatagcaaattagcaatgagtagtgggcagctctttattgatgataatatatg |
189 |
Q |
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| T |
32845696 |
taaattgagttagaggaagatgtcgttttgcacacgtccgtgacatatagcaaattagcaatgagtagtgggcagctctttattgatgataatatatg |
32845599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 262 - 344
Target Start/End: Complemental strand, 32845528 - 32845442
Alignment:
| Q |
262 |
atctatacttagtatttgctacttttacatttgtg--tgtgagtgtataa--tgtgtgtataaatataactaacttaactaagtata |
344 |
Q |
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| T |
32845528 |
atctatacttagtatttgctacttttacatttgtgtatgtgagtgtataatgtgtgtgtataaatataactaacttaactaagtata |
32845442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 32845801 - 32845723
Alignment:
| Q |
13 |
aatattagatattttcatagagaaagggtttgccattttaacnnnnnnncaactttatctttctatttaaagaagaaaa |
91 |
Q |
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| T |
32845801 |
aatattagatattttcatagagaaagggtttgccattttaactttttttcaactttatctttctatttaaagaagaaaa |
32845723 |
T |
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