View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18638_high_10 (Length: 428)
Name: NF18638_high_10
Description: NF18638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18638_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 17 - 410
Target Start/End: Original strand, 10117004 - 10117395
Alignment:
| Q |
17 |
aatatgtagcaatgatggtttggactaatggtgcgttaacatcgacacatgtagttagattcaatcacttcaattannnnnnnnnaactttttacatgtt |
116 |
Q |
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| T |
10117004 |
aatatgtagcaatgatggtttggactaatggtgtgttaacatcgacacatgtagttagattcaatcacttcaatt--ttttttttaactttttacatgtt |
10117101 |
T |
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| Q |
117 |
tacttgttgatgtcagcatcgtgtagcgtcatgtctggtgtatgtatctatgtcggtacttcataagtgtgataggactgaattgttgaataaaaaagat |
216 |
Q |
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| T |
10117102 |
tacttgttgatgtcagcatcgtgtagcgtcatgtctggtgtatgtatctatgtcggtacttcataagtgtgataggactgaattgttgaataaaaaagat |
10117201 |
T |
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| Q |
217 |
ttacatgattggcatatagattgaatactatacatgatcacttgtattctttgattacatatatggtatatatagcaacatgcagttttctattacctga |
316 |
Q |
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| T |
10117202 |
ttacatgattggcatatagattgaatactatacatgatcacttgtattctttgattacatatatggtatatatagcaacatgcagttttctattacctga |
10117301 |
T |
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| Q |
317 |
atgttaatttgtataaacgttaagagtttccatctttgttgtcatttgatactcattatagtgaattttcacaagagcttttgatggctaatac |
410 |
Q |
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| T |
10117302 |
atgttaatttgtataaacgttaagagtttccatctttgttgttatttgatactcattatagtgaattttcataagagcttttgatggctaatac |
10117395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 394
Target Start/End: Original strand, 9484718 - 9484761
Alignment:
| Q |
351 |
tttgttgtcatttgatactcattatagtgaattttcacaagagc |
394 |
Q |
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| T |
9484718 |
tttgttgctatttgatactcattatagttaattttcacaagagc |
9484761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 394
Target Start/End: Complemental strand, 10382342 - 10382299
Alignment:
| Q |
351 |
tttgttgtcatttgatactcattatagtgaattttcacaagagc |
394 |
Q |
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| T |
10382342 |
tttgttgctatttgatactcattatagttaattttcacaagagc |
10382299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 52720922 - 52720874
Alignment:
| Q |
351 |
tttgttgtcatttgatactcattatagtgaattttcacaagagcttttg |
399 |
Q |
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| T |
52720922 |
tttgttgctatttgatactcattatagttaattttcacatgagcatttg |
52720874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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