View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18638_high_11 (Length: 409)
Name: NF18638_high_11
Description: NF18638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18638_high_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 17 - 396
Target Start/End: Original strand, 41754682 - 41755058
Alignment:
| Q |
17 |
attttatgcatactaactaccatgcatgctacaaaatcggaataatctaaaagtgtgatttagtagtattccatagatgagaagatagttaccaatataa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41754682 |
attttatgcatactaactaccatgcatgctacaaaatcggaataatctaaaagtgtgatttagtagtattccatagatgagaagatagttaccaatataa |
41754781 |
T |
|
| Q |
117 |
tcggtaagaacacgaccattactgaatcttccagcaggtttaccaggaaatgtgattccataaggttgcttgtacgatggtgagcccacaaaatttcctg |
216 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41754782 |
tcggtaagaacacgaccatcactgaatcttccaacaggtttaccaggaaatgtgattccataaggttgcttgtacgatggtgagcccacaaaatttcctg |
41754881 |
T |
|
| Q |
217 |
tgtcagcatatgaatctccaaatacaaacaattttacagagctgctgttgttgtcgtatacaccatatgatttcttagtcccttcaactacttctgtaac |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41754882 |
tgtcagcatatgaatctccaaatacaaacaattttacagagttgc---tgttgtcgtatacaccatatgatttcttagtcccttcaactacttctgtaac |
41754978 |
T |
|
| Q |
317 |
atttgcattaacttatgtcacatgatttcgaaacaataaaaatgaataaaccaaagacatttaattgaattattgtgatg |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41754979 |
atttgcattaacttatgtcacatgatttcgaaacaataaaaatgaataaaccaaagacatttaattgaattattatgatg |
41755058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 26 - 367
Target Start/End: Original strand, 41760605 - 41760936
Alignment:
| Q |
26 |
atactaactaccatgcatgctacaaaatcggaataatctaaaagtgtgatttagtagtattccatagat-gagaagatagttaccaatataatcggtaag |
124 |
Q |
| |
|
|||||||||||||| |||||| ||||||||| | |||||| ||| |||||||||| ||| ||||| |||||||| ||||||||| ||||||||||| |
|
|
| T |
41760605 |
atactaactaccat--atgctataaaatcggattgatctaacagtatgatttagta---ttcaatagagagagaagattgttaccaatgtaatcggtaag |
41760699 |
T |
|
| Q |
125 |
aacacgaccattactgaatcttccagcaggtttaccaggaaatgtgattccataaggttgcttgtacgatggtgagcccacaaaatttcctgtgtcagca |
224 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||| |
|
|
| T |
41760700 |
aacacgaccatcactgaatcttccagcaggtttaccaggaaatgtgattccataaggttgcttgtacgatggtgagcccataaaattgcctgtatcagca |
41760799 |
T |
|
| Q |
225 |
tatgaatctccaaatacaaacaattttacagagctgctgttgttgtcgtatacaccatatgatttcttagtcccttcaactacttctgtaacatttgcat |
324 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||| ||||| || |||||||||||||||||||||||||| || |||||||||| |||||||| |
|
|
| T |
41760800 |
tatgagtctccaaatacaaacaattttacaga------gtttttgtcatacacaccatatgatttcttagtcccttcgaccacttctgtaaaatttgcat |
41760893 |
T |
|
| Q |
325 |
taacttatgtcacatgatttcgaaacaataaaaatgaataaac |
367 |
Q |
| |
|
||| |||||||||| || || |||||||||||||||||| |
|
|
| T |
41760894 |
taatttatgtcacacaatagaaaaccaataaaaatgaataaac |
41760936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 144 - 244
Target Start/End: Original strand, 41749211 - 41749311
Alignment:
| Q |
144 |
cttccagcaggtttaccaggaaatgtgattccataaggttgcttgtacgatggtgagcccacaaaatttcctgtgtcagcatatgaatctccaaatacaa |
243 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||| |||| || ||||||||| | |||||||||| ||| ||||||| ||||||||||||| |
|
|
| T |
41749211 |
cttccagaaggtttaccaggaaaagtgattccataaggaagcttatatgatggtgaggtaaagtaatttcctgtatcaacatatgagtctccaaatacaa |
41749310 |
T |
|
| Q |
244 |
a |
244 |
Q |
| |
|
| |
|
|
| T |
41749311 |
a |
41749311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 251
Target Start/End: Original strand, 42225933 - 42225971
Alignment:
| Q |
213 |
cctgtgtcagcatatgaatctccaaatacaaacaatttt |
251 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
42225933 |
cctgtgtctgcatatgaatctccaaagacaaacaatttt |
42225971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University