View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18638_high_17 (Length: 278)
Name: NF18638_high_17
Description: NF18638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18638_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 264
Target Start/End: Original strand, 35196118 - 35196366
Alignment:
| Q |
16 |
atgaaattacctacgcaatnnnnnnnnttgcattgtgccagtattacaaaatactgatattccatgttttgagaaatatcaaaatggtgaaatccgtaag |
115 |
Q |
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| T |
35196118 |
atgaaattacctacgcaataaaaaaatttgcattatgccagtattacaaaatactgatattccatgttttgagaaatatcaaaatggcgaaatccgtaag |
35196217 |
T |
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| Q |
116 |
caaaattgcatttatttatgacattcacagaatctgagcagcggtgttcaatttttcagccaggccaagctgtgtccttgtgatgctagataaatatacc |
215 |
Q |
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| T |
35196218 |
caaaattgcatttatttatgacagtcacagaatctgagcagcggtgttcaatttttcagccaggccgagctgtgtccttgtgatgctagataaatatacc |
35196317 |
T |
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| Q |
216 |
atgagcaagtgatcctgaaaaccatgaaacactcttgttaggccaaaaa |
264 |
Q |
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| T |
35196318 |
atgagcaagtgatcctgaaaaccatgaaacactcttgtcaggccaaaaa |
35196366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 72 - 212
Target Start/End: Original strand, 35201179 - 35201322
Alignment:
| Q |
72 |
atattccatgttttgagaaatatca--aaatggtgaaatccgtaagcaaaattgcatttatttatgacat-tcacagaatctgagcagcggtgttcaatt |
168 |
Q |
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| T |
35201179 |
atattccatgttttgagaaatatcacaaaatggtgaaatcccttgtcaaaatttcattaattcatgccaaatcacataatctaagcagcggtgttcaatt |
35201278 |
T |
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| Q |
169 |
tttcagccaggccaagctgtgtccttgtgatgctagataaatat |
212 |
Q |
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| T |
35201279 |
tctcagccaggctgagctatgtcctagagatgctagataaatat |
35201322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 207 - 264
Target Start/End: Original strand, 35201979 - 35202036
Alignment:
| Q |
207 |
aaatataccatgagcaagtgatcctgaaaaccatgaaacactcttgttaggccaaaaa |
264 |
Q |
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| T |
35201979 |
aaatatgccatgagcaaatgatcctgaaaacaatgaaacactcttgtcaggccaaaaa |
35202036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 146 - 235
Target Start/End: Original strand, 31449959 - 31450048
Alignment:
| Q |
146 |
aatctgagcagcggtgttcaatttttcagccaggccaagctgtgtccttgtgatgctagataaatataccatgagcaagtgatcctgaaa |
235 |
Q |
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| T |
31449959 |
aatctgagcagccgtgttcaatttttcagccaagctaagttgagttcttgtgatgctagataagtataccatgagcaagtgatcctgaaa |
31450048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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