View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18638_high_19 (Length: 257)
Name: NF18638_high_19
Description: NF18638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18638_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 47270815 - 47271017
Alignment:
| Q |
18 |
tgatctcgatcaaacagccaacgatgtgctggccgtgtgaatgtatgaaattgtcgcaacaaatccaaatccagggaatcacttaccttccacgttcact |
117 |
Q |
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| T |
47270815 |
tgatctcgatcaaacagccaacgatgtgctggccgtgtgaatgtgtgaaattgtcgcaacaaatccaaatccagggaatcacttaccttccacgttcact |
47270914 |
T |
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| Q |
118 |
gtctggaagatttatatatcgttctaggatttcttcaatgcttcaaagcatatattaaaaagtgagaataagttcatttatttatatattc-aatcattt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
47270915 |
gtctggaagatttatatatcgttctaggatttcttcaatgcttcaaagcatatattaaaaagtgagaataagttcatttatttatacattcaaatcattt |
47271014 |
T |
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| Q |
217 |
tgt |
219 |
Q |
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||| |
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| T |
47271015 |
tgt |
47271017 |
T |
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