View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18638_high_21 (Length: 238)

Name: NF18638_high_21
Description: NF18638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18638_high_21
NF18638_high_21
[»] chr8 (6 HSPs)
chr8 (14-221)||(2631533-2631739)
chr8 (74-153)||(33956470-33956549)
chr8 (27-86)||(16043728-16043787)
chr8 (45-86)||(13567009-13567051)
chr8 (54-82)||(15646184-15646212)
chr8 (53-81)||(16932671-16932699)
[»] chr2 (7 HSPs)
chr2 (40-177)||(15894899-15895037)
chr2 (57-154)||(18142808-18142906)
chr2 (34-85)||(1490589-1490640)
chr2 (32-99)||(16110037-16110101)
chr2 (54-83)||(20374230-20374259)
chr2 (57-86)||(21862518-21862547)
chr2 (18-86)||(28698127-28698194)
[»] scaffold0236 (1 HSPs)
scaffold0236 (33-188)||(6237-6392)
[»] chr3 (8 HSPs)
chr3 (38-153)||(32222543-32222660)
chr3 (54-86)||(10287788-10287820)
chr3 (50-89)||(25374409-25374449)
chr3 (34-92)||(33537222-33537280)
chr3 (45-83)||(25771477-25771515)
chr3 (61-98)||(25807460-25807497)
chr3 (54-82)||(10945900-10945928)
chr3 (28-86)||(20303665-20303725)
[»] chr1 (9 HSPs)
chr1 (53-188)||(5569487-5569625)
chr1 (27-99)||(46391596-46391668)
chr1 (27-82)||(20149836-20149892)
chr1 (19-82)||(28015932-28015998)
chr1 (28-95)||(10433126-10433192)
chr1 (27-86)||(15120948-15121009)
chr1 (27-86)||(15145136-15145197)
chr1 (32-86)||(17745489-17745545)
chr1 (27-85)||(31893044-31893106)
[»] scaffold1667 (1 HSPs)
scaffold1667 (34-136)||(795-896)
[»] scaffold0044 (1 HSPs)
scaffold0044 (34-136)||(20743-20844)
[»] chr6 (9 HSPs)
chr6 (27-86)||(30492276-30492336)
chr6 (28-85)||(20589570-20589626)
chr6 (34-98)||(10301825-10301888)
chr6 (28-145)||(22705189-22705308)
chr6 (45-95)||(24373440-24373490)
chr6 (28-97)||(1448715-1448783)
chr6 (45-83)||(1110396-1110434)
chr6 (34-91)||(11319398-11319456)
chr6 (32-86)||(15141992-15142048)
[»] chr7 (9 HSPs)
chr7 (27-92)||(28783654-28783719)
chr7 (32-83)||(8612737-8612789)
chr7 (51-88)||(1799732-1799770)
chr7 (27-86)||(14073721-14073781)
chr7 (27-86)||(14383749-14383809)
chr7 (57-86)||(22980674-22980703)
chr7 (27-99)||(27845786-27845854)
chr7 (36-86)||(7324254-7324306)
chr7 (54-86)||(22846882-22846914)
[»] scaffold0001 (2 HSPs)
scaffold0001 (27-86)||(56619-56677)
scaffold0001 (61-105)||(20797-20841)
[»] chr4 (2 HSPs)
chr4 (34-93)||(21180112-21180173)
chr4 (19-88)||(20383880-20383951)
[»] scaffold1390 (1 HSPs)
scaffold1390 (28-83)||(1292-1350)
[»] scaffold0257 (1 HSPs)
scaffold0257 (27-103)||(16110-16188)
[»] scaffold0045 (1 HSPs)
scaffold0045 (27-86)||(80267-80327)
[»] chr5 (1 HSPs)
chr5 (54-82)||(35358534-35358562)


Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 2631739 - 2631533
Alignment:
Q  14 aatatctataaaatttatttaaaaaaggggaaaaattatatacaagagggggactaggccaaaaccctcaaaacaagaaagaaaaaggaaaagataaaca 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2631739 aatatctataaaatttatttaaaaaaggggaaaaattatatacaagagggggactaggccaaaaccctcaaaacaagaaa-aaaaaggaaaagataaaca 2631641  T
Q  114 acggattaagggaatctgtaagtaggtagaccacatctgtttctctagaaattaaactgtaaaacaggcggtaatgcattgagcagccacaaaaataaca 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2631640 acggattaagggaatctgtaagtaggtagaccacatctgtttctctagaaattaaactgtaaaacaggcggtaatgcattgagcagccacaaaaataaca 2631541  T
Q  214 atagggtt 221  Q
    ||||||||    
T  2631540 atagggtt 2631533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 153
Target Start/End: Original strand, 33956470 - 33956549
Alignment:
Q  74 aaaaccctcaaaacaagaaagaaaaaggaaaagataaacaacggattaagggaatctgtaagtaggtagaccacatctgt 153  Q
    |||||||||||||||||||||||||||||||||| || ||||  | || |||||||||||| |||  |||||||||||||    
T  33956470 aaaaccctcaaaacaagaaagaaaaaggaaaagaaaatcaacaaactaggggaatctgtaattagacagaccacatctgt 33956549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 16043728 - 16043787
Alignment:
Q  27 tttatttaaaaaaggggaaaaattatatacaagaggggg-actaggccaaaaccctcaaaa 86  Q
    |||||| |||||||||||||||| ||||||| ||||||| ||||| |||||||||||||||    
T  16043728 tttattaaaaaaaggggaaaaat-atatacatgaggggggactagaccaaaaccctcaaaa 16043787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 13567009 - 13567051
Alignment:
Q  45 aaaattatatacaagagg-gggactaggccaaaaccctcaaaa 86  Q
    |||| ||||||||||||| ||||||||||||||||||||||||    
T  13567009 aaaaatatatacaagaggagggactaggccaaaaccctcaaaa 13567051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 82
Target Start/End: Original strand, 15646184 - 15646212
Alignment:
Q  54 tacaagagggggactaggccaaaaccctc 82  Q
    |||||||||||||||||||||||||||||    
T  15646184 tacaagagggggactaggccaaaaccctc 15646212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 81
Target Start/End: Original strand, 16932671 - 16932699
Alignment:
Q  53 atacaagagggggactaggccaaaaccct 81  Q
    |||||||||||||||||||||||||||||    
T  16932671 atacaagagggggactaggccaaaaccct 16932699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 40 - 177
Target Start/End: Original strand, 15894899 - 15895037
Alignment:
Q  40 ggggaaaaattatatacaagaggg-ggactaggccaaaaccctcaaaacaagaaagaaaaaggaaaagataaacaacggattaagggaatctgtaagtag 138  Q
    |||| |||| ||||||||||| || ||||||| | |||||||||||||||||||||||||  || |||||||||||| ||||||| |||||||||| |||    
T  15894899 gggggaaaagtatatacaagatggaggactagactaaaaccctcaaaacaagaaagaaaattgataagataaacaacagattaagagaatctgtaaatag 15894998  T
Q  139 gtagaccacatctgtttctctagaaattaaactgtaaaa 177  Q
    | ||||||||||||| ||| ||||||| ||| |||||||    
T  15894999 gcagaccacatctgtctctatagaaatcaaagtgtaaaa 15895037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 154
Target Start/End: Original strand, 18142808 - 18142906
Alignment:
Q  57 aagagggg-gactaggccaaaaccctcaaaacaagaaagaaaaaggaaaagataaacaacggattaagggaatctgtaagtaggtagaccacatctgtt 154  Q
    |||||||| |||||| | ||||||||||||||||||||||||| |||||||| || ||||  | || |||||| |||||||||| ||||| ||| ||||    
T  18142808 aagaggggtgactagactaaaaccctcaaaacaagaaagaaaacggaaaagaaaaccaacatactaggggaatatgtaagtaggcagaccgcatatgtt 18142906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 1490640 - 1490589
Alignment:
Q  34 aaaaaaggggaaaaattatatacaagag-ggggactaggccaaaaccctcaaa 85  Q
    |||||||||||||||| ||||||||||| |||||||||||||| |||||||||    
T  1490640 aaaaaaggggaaaaat-atatacaagaggggggactaggccaagaccctcaaa 1490589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 16110037 - 16110101
Alignment:
Q  32 ttaaaaaaggggaaaaattatatacaagagggg-gactaggccaaaaccctcaaaacaagaaagaaaaa 99  Q
    |||||||||||||||||    |||||||||||| ||||||||||||||||||| || |||||| |||||    
T  16110037 ttaaaaaaggggaaaaa----atacaagaggggggactaggccaaaaccctcagaagaagaaataaaaa 16110101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 83
Target Start/End: Original strand, 20374230 - 20374259
Alignment:
Q  54 tacaagagggggactaggccaaaaccctca 83  Q
    ||||||||||||||||||||||||||||||    
T  20374230 tacaagagggggactaggccaaaaccctca 20374259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 86
Target Start/End: Complemental strand, 21862547 - 21862518
Alignment:
Q  57 aagagggggactaggccaaaaccctcaaaa 86  Q
    ||||||||||||||||||||||||||||||    
T  21862547 aagagggggactaggccaaaaccctcaaaa 21862518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 28698194 - 28698127
Alignment:
Q  18 tctataaaatttatttaaaaaaggggaaaaattatatacaagagggggactaggccaaaaccctcaaaa 86  Q
    |||| |||||||||| |||||||| | ||||||| | |  || ||||||||||||||||||||||||||    
T  28698194 tctaaaaaatttattaaaaaaaggaggaaaattacaaaggag-gggggactaggccaaaaccctcaaaa 28698127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 188
Target Start/End: Complemental strand, 6392 - 6237
Alignment:
Q  33 taaaaaaggggaaaaat-tatatacaaga--gggggactaggccaaaaccct-caaaacaagaaagaaaaaggaaaagataaacaacggattaagggaat 128  Q
    ||||||||||  ||||| |||||||||||  |||||| |||| ||||| ||| |||||||||||||||||| ||||||| |||||||  |||||||||||    
T  6392 taaaaaagggagaaaatgtatatacaagaaggggggattaggtcaaaaaccttcaaaacaagaaagaaaaaagaaaagagaaacaacatattaagggaat 6293  T
Q  129 ctgtaagtaggtagaccacatctgtttctctagaaattaaactgtaaaacaggcggtaat 188  Q
    |||||||||||   ||||||| ||||  ||||||||| ||| |||||||||||| |||||    
T  6292 ctgtaagtagg--caccacatatgtt--tctagaaatcaaagtgtaaaacaggcagtaat 6237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 38 - 153
Target Start/End: Original strand, 32222543 - 32222660
Alignment:
Q  38 aaggggaaaaattatatacaa-ga-gggggactaggccaaaaccctcaaaacaagaaagaaaaaggaaaagataaacaacggattaagggaatctgtaag 135  Q
    |||||| |||| ||||||||| || |||||||||| ||||||| |||||||||||||||||||||||||||| || |||| || || ||||||||||||     
T  32222543 aagggggaaaaatatatacaaagacgggggactagaccaaaactctcaaaacaagaaagaaaaaggaaaagaaaaccaacagactaggggaatctgtaat 32222642  T
Q  136 taggtagaccacatctgt 153  Q
    |||| ||||| |||||||    
T  32222643 taggcagaccgcatctgt 32222660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 10287788 - 10287820
Alignment:
Q  54 tacaagagggggactaggccaaaaccctcaaaa 86  Q
    |||||||||||||||||||||||||||||||||    
T  10287788 tacaagagggggactaggccaaaaccctcaaaa 10287820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 89
Target Start/End: Original strand, 25374409 - 25374449
Alignment:
Q  50 tatatacaagag-ggggactaggccaaaaccctcaaaacaa 89  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  25374409 tatatacaagagtggggactaggccaaaaccctcaaaacaa 25374449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 33537280 - 33537222
Alignment:
Q  34 aaaaaaggggaaaaattatatacaagaggggg-actaggccaaaaccctcaaaacaagaa 92  Q
    |||||||||||||||  ||||||||||||||| |||||||||||||||| |||| |||||    
T  33537280 aaaaaaggggaaaaag-atatacaagaggggggactaggccaaaacccttaaaataagaa 33537222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 83
Target Start/End: Original strand, 25771477 - 25771515
Alignment:
Q  45 aaaattatatacaagagggggactaggccaaaaccctca 83  Q
    |||| ||| ||||||||||||||||||||||||||||||    
T  25771477 aaaaatatttacaagagggggactaggccaaaaccctca 25771515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 25807460 - 25807497
Alignment:
Q  61 gggggactaggccaaaaccctcaaaacaagaaagaaaa 98  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  25807460 gggggactaggccaagaccctcaaaataagaaagaaaa 25807497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 82
Target Start/End: Complemental strand, 10945928 - 10945900
Alignment:
Q  54 tacaagagggggactaggccaaaaccctc 82  Q
    |||||||||||||||||||||||||||||    
T  10945928 tacaagagggggactaggccaaaaccctc 10945900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 20303665 - 20303725
Alignment:
Q  28 ttatttaaaaaaggggaaaaattat-atacaagagggg-gactaggccaaaaccctcaaaa 86  Q
    ||||| |||||||||||||||| || | | |||||||| ||||||||||||||||||||||    
T  20303665 ttattaaaaaaaggggaaaaataattacaaaagaggggggactaggccaaaaccctcaaaa 20303725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 188
Target Start/End: Original strand, 5569487 - 5569625
Alignment:
Q  53 atacaagagggggactaggccaaaaccctcaaaacaagaaagaaaa---aggaaaagataaacaacggattaagggaatctgtaagtaggtagaccacat 149  Q
    ||||||||||||||  | || |||||||||||||||||||||||||   | |||||||||||||||  ||||||||||| |||| ||||  |||||| ||    
T  5569487 atacaagagggggatcaagctaaaaccctcaaaacaagaaagaaaataaaagaaaagataaacaacaaattaagggaatttgtaggtagacagaccatat 5569586  T
Q  150 ctgtttctctagaaattaaactgtaaaacaggcggtaat 188  Q
    |||| ||| | ||||| ||| |||||||||||| |||||    
T  5569587 ctgtctctgtggaaatcaaagtgtaaaacaggcagtaat 5569625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 46391596 - 46391668
Alignment:
Q  27 tttatttaaaaaaggggaaaaattatatacaaga-gggggactaggccaaaaccctcaaaacaagaaagaaaaa 99  Q
    |||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||| || |||||||||    
T  46391596 tttattaaaaaaaggggaaaaaatatatacaagaggggggactaggccaaaaccctcaaaa-aacaaagaaaaa 46391668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 20149836 - 20149892
Alignment:
Q  27 tttatttaaaaaaggggaaaaattatatacaa-gagggggactaggccaaaaccctc 82  Q
    |||||| |||||||||| |||| ||||| ||| ||||||||||||||||||||||||    
T  20149836 tttattaaaaaaaggggtaaaaatatattcaaagagggggactaggccaaaaccctc 20149892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 28015998 - 28015932
Alignment:
Q  19 ctataaaatttatttaaaaaaggggaaaaattatatacaaga----gggggactaggccaaaaccctc 82  Q
    |||||||||||  |||||||| ||||||||| ||||||||||    ||||||||||||||||||||||    
T  28015998 ctataaaattttattaaaaaaagggaaaaat-atatacaagaagaggggggactaggccaaaaccctc 28015932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 10433192 - 10433126
Alignment:
Q  28 ttatttaaaaaaggggaaaaattatatacaagaggg-ggactaggccaaaaccctcaaaacaagaaaga 95  Q
    ||||| ||||||||||||||  ||| |||||||||| ||| || |||||||||||| ||||||||||||    
T  10433192 ttattaaaaaaaggggaaaa--tatgtacaagagggaggaatatgccaaaaccctcgaaacaagaaaga 10433126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 15120948 - 15121009
Alignment:
Q  27 tttatttaaaaaaggggaaaaattatatacaagagg---gggactaggccaaaaccctcaaaa 86  Q
    |||||||||||||||  |||||| | ||||||||||   ||||||||||||||||||||||||    
T  15120948 tttatttaaaaaaggaaaaaaataa-atacaagaggagggggactaggccaaaaccctcaaaa 15121009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 15145136 - 15145197
Alignment:
Q  27 tttatttaaaaaaggggaaaaattatatacaagagg---gggactaggccaaaaccctcaaaa 86  Q
    |||||||||||||||  |||||| | ||||||||||   ||||||||||||||||||||||||    
T  15145136 tttatttaaaaaaggaaaaaaataa-atacaagaggagggggactaggccaaaaccctcaaaa 15145197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 17745489 - 17745545
Alignment:
Q  32 ttaaaaaaggggaaaa-attatatacaagagggg-gactaggccaaaaccctcaaaa 86  Q
    |||||||||| ||||| | ||| ||||||||||| ||||||||||||||||||||||    
T  17745489 ttaaaaaaggagaaaataatatgtacaagaggggggactaggccaaaaccctcaaaa 17745545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 31893106 - 31893044
Alignment:
Q  27 tttatttaaaaaaggggaaaaattatatacaa---gaggggg-actaggccaaaaccctcaaa 85  Q
    |||||| |||||||||||||||  ||||||||   ||||||| ||||||||||||||||||||    
T  31893106 tttattaaaaaaaggggaaaaaaaatatacaaagagaggggggactaggccaaaaccctcaaa 31893044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1667 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold1667
Description:

Target: scaffold1667; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 34 - 136
Target Start/End: Original strand, 795 - 896
Alignment:
Q  34 aaaaaaggggaaaaattatatacaagaggggga-ctaggccaaaaccctcaaaacaagaaagaaaaaggaaaagataaacaacggattaagggaatctgt 132  Q
    |||||||||| |||| |||||||||||| |||| |||| |||||||||||||||||| ||||||||  | ||||| || |||| || |||||||||||||    
T  795 aaaaaagggggaaaaatatatacaagagagggaactagaccaaaaccctcaaaacaataaagaaaa--ggaaagaaaatcaacagactaagggaatctgt 892  T
Q  133 aagt 136  Q
    ||||    
T  893 aagt 896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 34 - 136
Target Start/End: Complemental strand, 20844 - 20743
Alignment:
Q  34 aaaaaaggggaaaaattatatacaagaggggga-ctaggccaaaaccctcaaaacaagaaagaaaaaggaaaagataaacaacggattaagggaatctgt 132  Q
    |||||||||| |||| |||||||||||| |||| |||| |||||||||||||||||| ||||||||  | ||||| || |||| || |||||||||||||    
T  20844 aaaaaagggggaaaaatatatacaagagagggaactagaccaaaaccctcaaaacaataaagaaaa--ggaaagaaaatcaacagactaagggaatctgt 20747  T
Q  133 aagt 136  Q
    ||||    
T  20746 aagt 20743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 30492336 - 30492276
Alignment:
Q  27 tttatttaaaaaaggggaaaaattatatacaagag-ggggactaggccaaaaccctcaaaa 86  Q
    |||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  30492336 tttattaaaaaaaggggaaaaaatatatacaagaggggggactaggccaaaaccctcaaaa 30492276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 20589626 - 20589570
Alignment:
Q  28 ttatttaaaaaaggggaaaaattatatacaagagggggactaggccaaaaccctcaaa 85  Q
    ||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  20589626 ttattaaaaaaaagggaaaaat-atatacaagagggggactaggccaaaaccctcaaa 20589570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 10301825 - 10301888
Alignment:
Q  34 aaaaaaggggaaaaattatatacaagagggggactaggccaaaaccctcaaaacaagaaagaaaa 98  Q
    |||||| ||||||||| ||||||||||||||||| || |||||||||||||||||| ||||||||    
T  10301825 aaaaaatgggaaaaat-atatacaagagggggaccagaccaaaaccctcaaaacaaaaaagaaaa 10301888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 145
Target Start/End: Complemental strand, 22705308 - 22705189
Alignment:
Q  28 ttatttaaaaaaggggaaaaattatatacaa-gaggggg-actaggccaaaaccctcaaaacaagaaagaaaaaggaaaagataaacaacggattaaggg 125  Q
    ||||| ||||||||||  ||| ||||||||| ||||||| | ||||| ||||| ||||||||||||||||||||||||| |  || |||  || || |||    
T  22705308 ttattaaaaaaaggggggaaaatatatacaaagaggggggattaggctaaaactctcaaaacaagaaagaaaaaggaaacggaaaccaatagactagggg 22705209  T
Q  126 aatctgtaagtaggtagacc 145  Q
    ||||||||| |||| |||||    
T  22705208 aatctgtaattaggcagacc 22705189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 24373490 - 24373440
Alignment:
Q  45 aaaattatatacaagagggggactaggccaaaaccctcaaaacaagaaaga 95  Q
    |||| ||||||||||||||||||||||| ||||||||  ||||||||||||    
T  24373490 aaaagtatatacaagagggggactaggcaaaaaccctggaaacaagaaaga 24373440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 1448783 - 1448715
Alignment:
Q  28 ttatttaaaaaaggggaaaaattatatacaagagggggactaggccaaaaccctcaaaacaagaaagaaa 97  Q
    ||||| |||||| |||| |||| || |||||||||||||||||||||| |||||| |||||| |||||||    
T  1448783 ttattaaaaaaaagggataaat-atgtacaagagggggactaggccaagaccctcgaaacaaaaaagaaa 1448715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 1110434 - 1110396
Alignment:
Q  45 aaaattatatacaagagggggactaggccaaaaccctca 83  Q
    |||| ||||||||||||||||||||| ||||||||||||    
T  1110434 aaaagtatatacaagagggggactagaccaaaaccctca 1110396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 11319456 - 11319398
Alignment:
Q  34 aaaaaaggggaaaaattatatacaagaggggg-actaggccaaaaccctcaaaacaaga 91  Q
    |||||||||| |||| ||| |||||||||||| |||||||||| |||||| ||||||||    
T  11319456 aaaaaagggggaaaaatatgtacaagaggggggactaggccaagaccctcgaaacaaga 11319398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 15141992 - 15142048
Alignment:
Q  32 ttaaaaaaggggaaaaattatatacaa-gagggg-gactaggccaaaaccctcaaaa 86  Q
    ||||| || |||||||| ||||||||| |||||| ||||||||||||||||||||||    
T  15141992 ttaaacaaagggaaaaaatatatacaaagaggggggactaggccaaaaccctcaaaa 15142048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 28783654 - 28783719
Alignment:
Q  27 tttatttaaaaaaggggaaaaattatatacaagagg-gggactaggccaaaaccctcaaaacaagaa 92  Q
    |||||| ||||| |||||||||  |||||||||||| |||||||||||||||||||||||| |||||    
T  28783654 tttattaaaaaacggggaaaaag-atatacaagaggagggactaggccaaaaccctcaaaataagaa 28783719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 8612737 - 8612789
Alignment:
Q  32 ttaaaaaaggggaaaaat-tatatacaagagggggactaggccaaaaccctca 83  Q
    ||||||||||| |||||| |||||||||||| || ||||||||||||||||||    
T  8612737 ttaaaaaagggaaaaaatatatatacaagagtggaactaggccaaaaccctca 8612789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 88
Target Start/End: Complemental strand, 1799770 - 1799732
Alignment:
Q  51 atatacaagaggg-ggactaggccaaaaccctcaaaaca 88  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  1799770 atatacaagagggtggactaggccaaaaccctcaaaaca 1799732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 14073781 - 14073721
Alignment:
Q  27 tttatttaaaaaaggggaaaaattatatacaa--gagggggactaggccaaaaccctcaaaa 86  Q
    |||||| |||||| ||||||||| || |||||  ||||||||||||||||||||||||||||    
T  14073781 tttattaaaaaaaagggaaaaataat-tacaaaggagggggactaggccaaaaccctcaaaa 14073721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 14383809 - 14383749
Alignment:
Q  27 tttatttaaaaaaggggaaaaattatatacaa--gagggggactaggccaaaaccctcaaaa 86  Q
    |||||| |||||| ||||||||| || |||||  ||||||||||||||||||||||||||||    
T  14383809 tttattaaaaaaaagggaaaaataat-tacaaaggagggggactaggccaaaaccctcaaaa 14383749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 86
Target Start/End: Original strand, 22980674 - 22980703
Alignment:
Q  57 aagagggggactaggccaaaaccctcaaaa 86  Q
    ||||||||||||||||||||||||||||||    
T  22980674 aagagggggactaggccaaaaccctcaaaa 22980703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 27845786 - 27845854
Alignment:
Q  27 tttatttaaaaaaggggaaaaattatatacaagagggg-gactaggccaaaaccctcaaaacaagaaagaaaaa 99  Q
    ||||||||||||||||| |||||     |||||||||| ||||||||||||||||||| || |||||| |||||    
T  27845786 tttatttaaaaaagggggaaaat-----acaagaggggggactaggccaaaaccctcagaaaaagaaataaaaa 27845854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 7324306 - 7324254
Alignment:
Q  36 aaaaggggaaaaat-tatatacaagaggggg-actaggccaaaaccctcaaaa 86  Q
    |||| ||||||||| |||||| ||||||||| |||||||||||||||||||||    
T  7324306 aaaaagggaaaaatatatataaaagaggggggactaggccaaaaccctcaaaa 7324254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 22846914 - 22846882
Alignment:
Q  54 tacaagagggggactaggccaaaaccctcaaaa 86  Q
    |||||||||||||||||||||||||||| ||||    
T  22846914 tacaagagggggactaggccaaaaccctaaaaa 22846882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 56677 - 56619
Alignment:
Q  27 tttatttaaaaaaggggaaaaattatatacaagaggggg-actaggccaaaaccctcaaaa 86  Q
    |||||| ||||||||||||||  |||||||||||||||| ||||| |||||||||||||||    
T  56677 tttattaaaaaaaggggaaaa--tatatacaagaggggggactagaccaaaaccctcaaaa 56619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 20797 - 20841
Alignment:
Q  61 gggggactaggccaaaaccctcaaaacaagaaagaaaaaggaaaa 105  Q
    |||||||||||||||||||||||||| || | ||||||| |||||    
T  20797 gggggactaggccaaaaccctcaaaataaaacagaaaaaagaaaa 20841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 21180112 - 21180173
Alignment:
Q  34 aaaaaaggggaaaaattatatacaa-gagg-gggactaggccaaaaccctcaaaacaagaaa 93  Q
    ||||||||||||||| ||||||||| |||| |||||||| ||||||||||||||| ||||||    
T  21180112 aaaaaaggggaaaaaatatatacaaagaggagggactagaccaaaaccctcaaaagaagaaa 21180173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 20383951 - 20383880
Alignment:
Q  19 ctataaaatttatttaaaaa-aggggaaaaattatatacaagaggggga-ctaggccaaaaccctcaaaaca 88  Q
    |||||||||||  ||||||| || || |||| || |||||||||||||| ||||||||||||||||||||||    
T  20383951 ctataaaattttattaaaaatagtgggaaaagtacatacaagagggggaactaggccaaaaccctcaaaaca 20383880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1390 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1390
Description:

Target: scaffold1390; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 1292 - 1350
Alignment:
Q  28 ttatttaaaaaaggggaaaaattatatacaagag---ggggactaggccaaaaccctca 83  Q
    |||||||||||| |||||||| ||| ||||| ||   ||||||||||||||||||||||    
T  1292 ttatttaaaaaaagggaaaaaatatgtacaaaagaggggggactaggccaaaaccctca 1350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 16188 - 16110
Alignment:
Q  27 tttatttaaaaaaggggaaaaattatatacaagaggggg--actaggccaaaaccctcaaaac-aagaaagaaaaaggaa 103  Q
    |||||| ||||||||| |||||| || ||||||||||||  ||||||||||||| ||| |||| |||||| |||||||||    
T  16188 tttattaaaaaaagggtaaaaat-atgtacaagagggggggactaggccaaaacgctcgaaacaaagaaaaaaaaaggaa 16110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 80327 - 80267
Alignment:
Q  27 tttatttaaaaaaggggaaaaattatatacaagagg-gggactaggccaaaaccctcaaaa 86  Q
    |||||||||||||||||||| | ||  ||||||||| |||||||  |||||||||||||||    
T  80327 tttatttaaaaaaggggaaataataattacaagaggagggactaaaccaaaaccctcaaaa 80267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 82
Target Start/End: Complemental strand, 35358562 - 35358534
Alignment:
Q  54 tacaagagggggactaggccaaaaccctc 82  Q
    |||||||||||||||||||||||||||||    
T  35358562 tacaagagggggactaggccaaaaccctc 35358534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University