View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18638_high_7 (Length: 499)

Name: NF18638_high_7
Description: NF18638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18638_high_7
NF18638_high_7
[»] chr3 (39 HSPs)
chr3 (11-271)||(50303192-50303452)
chr3 (332-477)||(50302985-50303130)
chr3 (332-483)||(33967945-33968096)
chr3 (79-266)||(55325153-55325329)
chr3 (332-483)||(34819742-34819893)
chr3 (81-248)||(33639412-33639579)
chr3 (361-482)||(33640930-33641051)
chr3 (84-266)||(40929296-40929478)
chr3 (333-483)||(55406839-55406989)
chr3 (122-246)||(32863566-32863690)
chr3 (120-266)||(5938052-5938198)
chr3 (79-251)||(25639397-25639569)
chr3 (78-223)||(50308961-50309105)
chr3 (333-483)||(21758275-21758424)
chr3 (81-219)||(34122385-34122523)
chr3 (122-266)||(13857070-13857213)
chr3 (76-223)||(50328369-50328506)
chr3 (338-483)||(28958533-28958677)
chr3 (81-223)||(50875502-50875639)
chr3 (377-483)||(47068777-47068884)
chr3 (376-483)||(47068890-47068997)
chr3 (332-423)||(51390248-51390339)
chr3 (167-266)||(5931151-5931250)
chr3 (81-248)||(40292911-40293078)
chr3 (81-179)||(11413042-11413140)
chr3 (332-478)||(28309469-28309614)
chr3 (162-266)||(10222993-10223102)
chr3 (335-472)||(44543279-44543415)
chr3 (80-131)||(13840729-13840780)
chr3 (157-248)||(18021762-18021853)
chr3 (376-483)||(52247431-52247538)
chr3 (333-483)||(50163960-50164110)
chr3 (383-483)||(14998752-14998851)
chr3 (158-241)||(13840770-13840853)
chr3 (122-248)||(44773955-44774081)
chr3 (360-477)||(12790037-12790157)
chr3 (393-455)||(55016142-55016204)
chr3 (393-482)||(50170484-50170572)
chr3 (367-431)||(23317316-23317380)
[»] chr7 (23 HSPs)
chr7 (93-260)||(8550599-8550766)
chr7 (82-266)||(11353645-11353823)
chr7 (360-484)||(2457900-2458024)
chr7 (80-245)||(46400007-46400167)
chr7 (334-483)||(23031693-23031841)
chr7 (154-266)||(32030304-32030421)
chr7 (81-248)||(31845082-31845249)
chr7 (122-266)||(45920046-45920190)
chr7 (336-483)||(3399234-3399380)
chr7 (360-483)||(32650065-32650188)
chr7 (122-248)||(33382364-33382490)
chr7 (332-483)||(36783189-36783334)
chr7 (122-263)||(45067526-45067667)
chr7 (81-248)||(32745839-32746005)
chr7 (384-457)||(44599400-44599473)
chr7 (120-239)||(28681850-28681969)
chr7 (137-266)||(35086406-35086535)
chr7 (366-470)||(42934125-42934228)
chr7 (83-130)||(32030408-32030455)
chr7 (80-248)||(40474332-40474500)
chr7 (397-482)||(16831599-16831684)
chr7 (360-483)||(35265310-35265424)
chr7 (197-266)||(27856574-27856643)
[»] chr4 (43 HSPs)
chr4 (101-266)||(27510753-27510918)
chr4 (80-267)||(2736628-2736815)
chr4 (78-265)||(38370070-38370256)
chr4 (82-266)||(40143278-40143461)
chr4 (387-483)||(48818455-48818551)
chr4 (117-223)||(46171631-46171737)
chr4 (81-251)||(35653305-35653470)
chr4 (157-266)||(35258245-35258359)
chr4 (341-483)||(17354494-17354628)
chr4 (332-460)||(29431770-29431899)
chr4 (120-266)||(31879510-31879656)
chr4 (154-260)||(48995734-48995840)
chr4 (81-246)||(23516065-23516230)
chr4 (342-477)||(6942406-6942541)
chr4 (120-266)||(6582333-6582479)
chr4 (376-483)||(6942218-6942317)
chr4 (339-482)||(37861166-37861309)
chr4 (81-251)||(38935730-38935895)
chr4 (157-266)||(12389204-12389313)
chr4 (358-483)||(27574593-27574718)
chr4 (78-223)||(39267410-39267550)
chr4 (79-131)||(48995696-48995748)
chr4 (341-456)||(19399840-19399955)
chr4 (339-482)||(46963863-46964006)
chr4 (122-179)||(22772502-22772559)
chr4 (334-483)||(7162154-7162305)
chr4 (427-479)||(19594463-19594515)
chr4 (334-441)||(42600580-42600686)
chr4 (81-248)||(49706402-49706569)
chr4 (397-484)||(54612611-54612697)
chr4 (159-266)||(16048056-16048165)
chr4 (398-483)||(39835705-39835790)
chr4 (133-245)||(9117328-9117440)
chr4 (376-483)||(2720536-2720642)
chr4 (367-482)||(30617574-30617689)
chr4 (339-482)||(30666835-30666978)
chr4 (382-441)||(35147422-35147481)
chr4 (417-483)||(33977801-33977867)
chr4 (81-131)||(35258206-35258256)
chr4 (394-484)||(52355863-52355953)
chr4 (342-475)||(13435383-13435516)
chr4 (83-124)||(45065731-45065772)
chr4 (81-129)||(49642158-49642206)
[»] chr8 (31 HSPs)
chr8 (81-266)||(9539921-9540101)
chr8 (126-266)||(26053583-26053728)
chr8 (336-483)||(40330144-40330289)
chr8 (81-248)||(28733971-28734137)
chr8 (122-251)||(15254944-15255073)
chr8 (120-266)||(33691640-33691786)
chr8 (117-266)||(10902985-10903134)
chr8 (122-271)||(40346948-40347097)
chr8 (149-260)||(10226772-10226883)
chr8 (360-483)||(12398040-12398164)
chr8 (333-478)||(33274215-33274360)
chr8 (334-483)||(12892559-12892702)
chr8 (187-271)||(27114947-27115031)
chr8 (120-214)||(17564444-17564538)
chr8 (122-247)||(42475669-42475789)
chr8 (120-248)||(19147544-19147672)
chr8 (159-271)||(34360431-34360543)
chr8 (81-248)||(4885488-4885655)
chr8 (358-483)||(18310479-18310607)
chr8 (81-167)||(27114873-27114958)
chr8 (188-266)||(36368562-36368640)
chr8 (142-247)||(40614641-40614746)
chr8 (356-483)||(23736907-23737037)
chr8 (80-178)||(16587531-16587629)
chr8 (81-219)||(19127283-19127421)
chr8 (159-266)||(14333977-14334083)
chr8 (140-224)||(21184110-21184194)
chr8 (439-477)||(404436-404474)
chr8 (332-422)||(11254287-11254376)
chr8 (190-248)||(33238112-33238170)
chr8 (398-471)||(36604061-36604134)
[»] chr2 (29 HSPs)
chr2 (332-483)||(35813794-35813946)
chr2 (333-483)||(43592652-43592794)
chr2 (80-266)||(5270424-5270605)
chr2 (381-482)||(28226171-28226272)
chr2 (335-455)||(33440792-33440912)
chr2 (120-266)||(31365492-31365638)
chr2 (336-483)||(43664754-43664901)
chr2 (335-436)||(32839038-32839139)
chr2 (84-175)||(36669821-36669912)
chr2 (80-166)||(25396359-25396445)
chr2 (81-266)||(2153983-2154168)
chr2 (354-483)||(11252540-11252669)
chr2 (398-481)||(8335244-8335327)
chr2 (382-477)||(9886853-9886949)
chr2 (339-482)||(5577970-5578113)
chr2 (367-477)||(4283410-4283520)
chr2 (337-457)||(3369866-3369986)
chr2 (335-438)||(2674257-2674360)
chr2 (360-422)||(30561021-30561083)
chr2 (398-484)||(37624997-37625083)
chr2 (79-248)||(43177057-43177226)
chr2 (361-471)||(39958814-39958925)
chr2 (382-483)||(7721578-7721679)
chr2 (386-473)||(13915863-13915950)
chr2 (382-422)||(33434309-33434349)
chr2 (360-412)||(44722584-44722636)
chr2 (394-444)||(2126213-2126263)
chr2 (199-267)||(25396452-25396525)
chr2 (401-457)||(39187522-39187578)
[»] chr1 (41 HSPs)
chr1 (369-483)||(12570110-12570224)
chr1 (360-474)||(13383047-13383161)
chr1 (81-267)||(27842539-27842725)
chr1 (81-266)||(34393586-34393771)
chr1 (358-483)||(50075560-50075685)
chr1 (332-484)||(36438333-36438485)
chr1 (332-483)||(21008144-21008295)
chr1 (332-483)||(47949995-47950146)
chr1 (333-483)||(14149476-14149625)
chr1 (120-266)||(24186652-24186798)
chr1 (137-266)||(34387537-34387666)
chr1 (81-265)||(32000538-32000727)
chr1 (366-483)||(24439128-24439245)
chr1 (383-483)||(11908539-11908639)
chr1 (159-266)||(34588859-34588966)
chr1 (332-477)||(10101246-10101386)
chr1 (398-478)||(47445989-47446069)
chr1 (122-248)||(790091-790217)
chr1 (122-248)||(15649118-15649244)
chr1 (81-223)||(17305087-17305228)
chr1 (335-411)||(47449137-47449213)
chr1 (336-483)||(35652488-35652635)
chr1 (81-248)||(51236312-51236478)
chr1 (81-179)||(33376482-33376580)
chr1 (398-483)||(47176746-47176832)
chr1 (338-411)||(1607323-1607396)
chr1 (399-483)||(46288800-46288884)
chr1 (360-483)||(10987204-10987327)
chr1 (332-457)||(18033670-18033796)
chr1 (382-483)||(23452924-23453023)
chr1 (120-246)||(32132019-32132145)
chr1 (398-477)||(10657977-10658056)
chr1 (339-449)||(34462725-34462835)
chr1 (360-422)||(44487703-44487765)
chr1 (332-421)||(2355373-2355462)
chr1 (338-457)||(30321923-30322042)
chr1 (84-128)||(48313899-48313943)
chr1 (398-441)||(5029665-5029708)
chr1 (197-267)||(8065386-8065456)
chr1 (140-241)||(24918871-24918972)
chr1 (393-457)||(38081624-38081688)
[»] scaffold0064 (1 HSPs)
scaffold0064 (81-266)||(54051-54236)
[»] chr6 (13 HSPs)
chr6 (81-271)||(1800884-1801074)
chr6 (81-271)||(23111273-23111458)
chr6 (360-478)||(32604488-32604606)
chr6 (81-253)||(12356337-12356504)
chr6 (137-266)||(29092755-29092884)
chr6 (82-266)||(17154276-17154460)
chr6 (80-251)||(8636150-8636311)
chr6 (159-266)||(33702599-33702706)
chr6 (80-252)||(29397938-29398109)
chr6 (360-484)||(1288158-1288274)
chr6 (157-248)||(27596511-27596602)
chr6 (358-414)||(33513908-33513964)
chr6 (339-411)||(2588769-2588841)
[»] chr5 (22 HSPs)
chr5 (342-483)||(12517064-12517201)
chr5 (86-238)||(33062041-33062193)
chr5 (338-446)||(18393244-18393352)
chr5 (336-483)||(35470083-35470228)
chr5 (366-474)||(41174126-41174234)
chr5 (115-266)||(3523150-3523301)
chr5 (334-483)||(35563017-35563173)
chr5 (122-223)||(31069137-31069238)
chr5 (81-248)||(32955763-32955930)
chr5 (187-262)||(42545701-42545776)
chr5 (360-483)||(3494496-3494619)
chr5 (402-461)||(28993894-28993953)
chr5 (382-457)||(42207106-42207181)
chr5 (162-266)||(26818351-26818460)
chr5 (427-483)||(17904323-17904379)
chr5 (360-483)||(5844332-5844455)
chr5 (378-432)||(11935969-11936023)
chr5 (394-461)||(4982513-4982580)
chr5 (197-248)||(8465187-8465238)
chr5 (339-449)||(523631-523741)
chr5 (81-130)||(42545765-42545814)
chr5 (397-477)||(37194009-37194088)
[»] scaffold0488 (1 HSPs)
scaffold0488 (81-248)||(7382-7549)
[»] scaffold0172 (1 HSPs)
scaffold0172 (384-446)||(26389-26451)
[»] scaffold0129 (1 HSPs)
scaffold0129 (420-483)||(37448-37511)
[»] scaffold0519 (1 HSPs)
scaffold0519 (332-422)||(11017-11106)


Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 11 - 271
Target Start/End: Complemental strand, 50303452 - 50303192
Alignment:
Q  11 gaacctgtgggtttgacaggttgacattttcctccttcaaaaagtcattttccatcaacactaacggaagtaggggtgggcatggtttggttaaccatat 110  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50303452 gaacatgtgggtttgacaggttgacattttcctctttcaaaaagtcattttccatcaacactaacggaagtaggggtgggcatggtttggttaaccatat 50303353  T
Q  111 taatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgctt 210  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  50303352 taatcgaatcgaaccaaaccgcagtgttgaaatggtttggaataaccgaaccgaaccgtttaaggtttgaagctatccgaactgaaccaaagttatgttt 50303253  T
Q  211 cggttaaccgtttgtttgtctattaaccaaaccgaaccaaaaccaaaattttgaactaaaa 271  Q
    |||||||||||||| ||| ||||||||| |||||| |||||||||||||||||||||||||    
T  50303252 cggttaaccgtttgcttgcctattaaccgaaccgatccaaaaccaaaattttgaactaaaa 50303192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 332 - 477
Target Start/End: Complemental strand, 50303130 - 50302985
Alignment:
Q  332 agggtcttgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaa 431  Q
    |||||| ||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50303130 agggtcatgttaacctgtgcccttatggcacaatataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaa 50303031  T
Q  432 cttatattttcaatacaatatttattgtttgtttctattttaagat 477  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  50303030 cttatattttcaatacaatatttattgtttgtttctattttaagat 50302985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 332 - 483
Target Start/End: Complemental strand, 33968096 - 33967945
Alignment:
Q  332 agggtcttgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaa 431  Q
    ||||||||||||||||||||  | | | ||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||  | |||||    
T  33968096 agggtcttgttaacttgtgctttaaaggcacaagataagaaacaaaataaagaaatttaacattggaaattgtgcattcataaccttaaaaacttaaaaa 33967997  T
Q  432 cttatattttcaatacaatatttattgtttgtttctattttaagatccttat 483  Q
     ||||||||| ||||||||||||||||||| |||||||| ||||||||||||    
T  33967996 gttatatttttaatacaatatttattgtttatttctattataagatccttat 33967945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 79 - 266
Target Start/End: Original strand, 55325153 - 55325329
Alignment:
Q  79 agtaggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggttt 178  Q
    ||||||||||||||||||| |||||||||||||||          |||||||| ||||||||||||||| ||||||| ||||| ||||||||||||||||    
T  55325153 agtaggggtgggcatggttcggttaaccatattaa----------ccgaaccgaagtgttgaaatggttcggaataaccgaactgaaccgtttaaggttt 55325242  T
Q  179 gaagctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaaccaaaaccaaaattttgaac 266  Q
    ||| ||| || |||||| ||||||||||| ||||  |||||||||| ||| || |||||| |||||||||||||||||||||||||||    
T  55325243 gaaactaacctaactgaaccaaagttatggttcgtctaaccgtttgcttgcct-ttaaccgaaccgaaccaaaaccaaaattttgaac 55325329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 332 - 483
Target Start/End: Complemental strand, 34819893 - 34819742
Alignment:
Q  332 agggtcttgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaa 431  Q
    |||||||| |||||||||||||| | | ||||| |||| |||| |||||||||||||| | |||| ||||||||||||||||| |||||||||| |||||    
T  34819893 agggtctttttaacttgtgccctaagggcacaagataaaaaactaaataaagaaatttgatcttgaaaattgtgcattcataaccttaaaagttaaaaaa 34819794  T
Q  432 cttatattttcaatacaatatttattgtttgtttctattttaagatccttat 483  Q
     |||| ||||||||||||| ||||||||||  |||||||||||||| |||||    
T  34819793 tttatcttttcaatacaatttttattgtttaattctattttaagattcttat 34819742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 81 - 248
Target Start/End: Complemental strand, 33639579 - 33639412
Alignment:
Q  81 taggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttga 180  Q
    |||||||||| |||||| ||||||||||||||| |||| | |||||||||  ||||||||||||||| ||||||||||| ||||||||||||||||||      
T  33639579 taggggtgggtatggttcggttaaccatattaaccgaaccaaaccgaaccaaagtgttgaaatggttcggaataatcgagccgaaccgtttaaggttttg 33639480  T
Q  181 agctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaacc 248  Q
    |  || ||||| ||| ||||||||||| |||| ||||||||||| ||  ||||||||| || ||||||    
T  33639479 aattaaccgaaatgaaccaaagttatggttcgattaaccgtttgcttccctattaaccgaatcgaacc 33639412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 361 - 482
Target Start/End: Original strand, 33640930 - 33641051
Alignment:
Q  361 acaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgtt 460  Q
    |||| ||||||||||||||||||||||||||  || |||||| |||||||||||  ||||||  | ||||||||||||||||||||||||||||||||||    
T  33640930 acaagataagaaaccaaataaagaaatttaattttagaaattttgcattcataactttaaaatcttaaaaacttatattttcaatacaatatttattgtt 33641029  T
Q  461 tgtttctattttaagatcctta 482  Q
    |  |||||||||||||||||||    
T  33641030 taattctattttaagatcctta 33641051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 84 - 266
Target Start/End: Original strand, 40929296 - 40929478
Alignment:
Q  84 gggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttgaagc 183  Q
    ||||||||||||||  ||||||||||||     || ||||||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||| | |    
T  40929296 gggtgggcatggttcagttaaccatatt-----aaccgaaccgaatcgaagtgttgaaatcgtttggaataatcgaactgaaccgtttaaggtttggaac 40929390  T
Q  184 tatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctatt-----aaccaaaccgaaccaaaaccaaaattttgaac 266  Q
    || ||||||||| ||||||||||| |||||||||| |||||  || || ||     |||| |||||||| ||||||||||||||||||    
T  40929391 taaccgaactgaaccaaagttatggttcggttaactgtttgcgtgcctgttaactgaaccgaaccgaactaaaaccaaaattttgaac 40929478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 333 - 483
Target Start/End: Original strand, 55406839 - 55406989
Alignment:
Q  333 gggtcttgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaac 432  Q
    ||||||||  || |||||||| || ||||||| ||||||||| ||||||| ||||||||| ||  |||||||||||| |||| |||||||  |  |||||    
T  55406839 gggtcttgcaaatttgtgcccctaggacacaagataagaaactaaataaaaaaatttaactttaaaaattgtgcatttataaccttaaaaactttaaaac 55406938  T
Q  433 ttatattttcaatacaatatttattgtttgtttctattttaagatccttat 483  Q
    |||| ||| |||||||||||||| |||||  ||||||||||||||||||||    
T  55406939 ttatttttccaatacaatatttagtgtttaattctattttaagatccttat 55406989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 122 - 246
Target Start/End: Complemental strand, 32863690 - 32863566
Alignment:
Q  122 aaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaaccgt 221  Q
    |||| ||||| ||||||||||||||| ||||||| | |||||||||||| |||||||| | ||| ||||||||| ||||||||||| ||||||||||| |    
T  32863690 aaccaaaccgaagtgttgaaatggttcggaataaccaaaccgaaccgttcaaggtttggaactaaccgaactgaaccaaagttatggttcggttaaccat 32863591  T
Q  222 ttgtttgtctattaaccaaaccgaa 246  Q
    |||  | |||||||||| |||||||    
T  32863590 ttgcatatctattaaccgaaccgaa 32863566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 120 - 266
Target Start/End: Complemental strand, 5938198 - 5938052
Alignment:
Q  120 cgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaacc 219  Q
    |||||||||||| | | ||||||||||| |||| ||  |||||||||||||| |||| ||  | ||| |||||||| ||||||||||| |||||||||||    
T  5938198 cgaaccgaaccgaaattttgaaatggttcggaaaaactgaaccgaaccgtttcaggtatgctggtatacgaactgaaccaaagttatggttcggttaacc 5938099  T
Q  220 gtttgtttgtctattaaccaaaccgaaccaaaaccaaaattttgaac 266  Q
    ||||  ||  |||| ||| |||||||||||||||||| |||||||||    
T  5938098 gttttcttacctatgaactaaaccgaaccaaaaccaatattttgaac 5938052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 79 - 251
Target Start/End: Complemental strand, 25639569 - 25639397
Alignment:
Q  79 agtaggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaac-----cgtttaa 173  Q
    ||||||||||| ||||||| ||||||||||||||| |||| |||||||||      ||||||||||||| | |||||| |||||||||     |||||||    
T  25639569 agtaggggtggacatggttcggttaaccatattaaccgaaccgaaccgaat-----tgttgaaatggttcgaaataattgaaccgaactaaaccgtttaa 25639475  T
Q  174 ggtttgaagctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaaccaaa 251  Q
    ||||||||  || ||||||||| ||||||||||| ||||||||||| |||| |||  ||||||   ||||||||||||    
T  25639474 ggtttgaaattaaccgaactgaaccaaagttatggttcggttaaccatttgcttgcttattaattgaaccgaaccaaa 25639397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 78 - 223
Target Start/End: Original strand, 50308961 - 50309105
Alignment:
Q  78 aagtaggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtt 177  Q
    |||||||||||||||||||| ||||||||  |  || |||| |||||||||||| | | ||||||||||| | || || ||||||||||||||| ||||     
T  50308961 aagtaggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaccgaaattttgaaatggttcgaaa-aaccgaaccgaaccgttttaggta 50309059  T
Q  178 tgaagctatccgaactgatccaaagttatgcttcggttaaccgttt 223  Q
    || |||||  |||||||| ||||||||||| |||||||||||||||    
T  50309060 tggagctaatcgaactgaaccaaagttatgtttcggttaaccgttt 50309105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 333 - 483
Target Start/End: Complemental strand, 21758424 - 21758275
Alignment:
Q  333 gggtcttgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaac 432  Q
    |||||||||||||||||||||| | ||||||| ||||||||  ||||||||||||||||| ||||||||| ||||||||  | || ||||| | ||| |     
T  21758424 gggtcttgttaacttgtgccctaaggacacaagataagaaattaaataaagaaatttaactttggaaattatgcattcaatacctcaaaaggttaaatag 21758325  T
Q  433 ttatattttcaatacaatatttattgtttgtttctattttaagatccttat 483  Q
    |||  |||| |||||||||||||||  ||  |||||||||||||| |||||    
T  21758324 ttaactttttaatacaatatttatt-attaattctattttaagattcttat 21758275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 81 - 219
Target Start/End: Complemental strand, 34122523 - 34122385
Alignment:
Q  81 taggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttga 180  Q
    ||||||||||||||||| |||||||||||   || |||  ||||||||||| | |||||||||||||| ||| ||  ||||| ||||||||||| ||||     
T  34122523 taggggtgggcatggttcggttaaccataaatattgaactgaaccgaaccgaattgttgaaatggtttagaaaaactgaaccaaaccgtttaagatttgg 34122424  T
Q  181 agctatccgaactgatccaaagttatgcttcggttaacc 219  Q
    | ||||||||||| | ||||||||||| || ||||||||    
T  34122423 aactatccgaactcaaccaaagttatggtttggttaacc 34122385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 122 - 266
Target Start/End: Original strand, 13857070 - 13857213
Alignment:
Q  122 aaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaaccgt 221  Q
    |||||||||| | | || |||||||| |||| || ||||||||||||||| |||| || | ||| ||||||||| ||||||||||| |||||||||||||    
T  13857070 aaccgaaccgaaattttaaaatggttcggaa-aaccgaaccgaaccgtttcaggtatgcaactaaccgaactgaaccaaagttatggttcggttaaccgt 13857168  T
Q  222 ttgtttgtctattaaccaaaccgaaccaaaaccaaaattttgaac 266  Q
    ||  ||  |||| |||| |||| |||||||||||| |||||||||    
T  13857169 tttcttacctatgaaccgaaccaaaccaaaaccaatattttgaac 13857213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 76 - 223
Target Start/End: Complemental strand, 50328506 - 50328369
Alignment:
Q  76 ggaagtaggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaagg 175  Q
    |||| ||||||||||||||||| |||||||||||||||          |||||||| | ||||||||||||| ||||||| ||||||||||||||||||     
T  50328506 ggaactaggggtgggcatggttcggttaaccatattaa----------ccgaaccgaaatgttgaaatggttcggaataaccgaaccgaaccgtttaaga 50328417  T
Q  176 tttgaagctatccgaactgatccaaagttatgcttcggttaaccgttt 223  Q
    |||  | | | | ||||||| ||||||||||| |||||||||||||||    
T  50328416 tttagaacgaactgaactgaaccaaagttatggttcggttaaccgttt 50328369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 338 - 483
Target Start/End: Original strand, 28958533 - 28958677
Alignment:
Q  338 ttgttaacttgtgcccttatga-cacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttat 436  Q
    ||||||||||||||||| | || ||||| ||||||||| ||||||||||||||||| ||| ||| |||  |||||| | |||||||| | ||||  ||||    
T  28958533 ttgttaacttgtgccct-aggagcacaagataagaaactaaataaagaaatttaactttgaaaagtgtatattcatgaccttaaaagcttaaaat-ttat 28958630  T
Q  437 attttcaatacaatatttattgtttgtttctattttaagatccttat 483  Q
     |||||||||||||| |||||||||  |||| |||||||||||||||    
T  28958631 cttttcaatacaataattattgtttacttctgttttaagatccttat 28958677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 81 - 223
Target Start/End: Complemental strand, 50875639 - 50875502
Alignment:
Q  81 taggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttga 180  Q
    ||||||||||||||||| |||||||||||||     || |||||||||||| ||||||||||||||| ||||||| |||||| || | |||||| |||      
T  50875639 taggggtgggcatggttcggttaaccatatt-----aaccgaaccgaaccgaagtgttgaaatggttcggaataaccgaaccaaatcatttaagatttag 50875545  T
Q  181 agctatccgaactgatccaaagttatgcttcggttaaccgttt 223  Q
    | | | | ||||||| ||||||||||  |||||||||||||||    
T  50875544 aacgaactgaactgaaccaaagttatagttcggttaaccgttt 50875502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 377 - 483
Target Start/End: Complemental strand, 47068884 - 47068777
Alignment:
Q  377 aataaagaaatttaaccttggaaattgtgcattcataa-tcttaaaagttcaaaaacttatattttcaatacaatatttattgtttgtttctattttaag 475  Q
    |||||||||||||||| ||| ||||||||||||||||| | | |||| || ||||| |||| |||| |||| |||||||||| ||| |||||||| ||||    
T  47068884 aataaagaaatttaacattgaaaattgtgcattcataattgtaaaaacttaaaaaaattatctttttaatataatatttattatttatttctattctaag 47068785  T
Q  476 atccttat 483  Q
    ||||||||    
T  47068784 atccttat 47068777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 376 - 483
Target Start/End: Complemental strand, 47068997 - 47068890
Alignment:
Q  376 aaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgtttgtttctattttaag 475  Q
    ||||||||||||||||| ||  |||||||||||||||||  ||||||  | ||||| |||| |||| ||||||||||||||| ||  |||||||| ||||    
T  47068997 aaataaagaaatttaacattaaaaattgtgcattcataactttaaaaacttaaaaaattatctttttaatacaatatttattattgatttctattctaag 47068898  T
Q  476 atccttat 483  Q
    ||||||||    
T  47068897 atccttat 47068890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 332 - 423
Target Start/End: Original strand, 51390248 - 51390339
Alignment:
Q  332 agggtcttgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaag 423  Q
    ||||||||||||||||||||||||| | ||||| ||||||||  ||||  |||||||||   |||||||||||||||||||||| |||||||    
T  51390248 agggtcttgttaacttgtgcccttagggcacaagataagaaattaaatgtagaaatttagtattggaaattgtgcattcataattttaaaag 51390339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 167 - 266
Target Start/End: Original strand, 5931151 - 5931250
Alignment:
Q  167 cgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaaccaaaaccaaaattttgaac 266  Q
    ||||| |||| || ||||||||||||||| ||||||||||  |||||||||||||||  ||  |||| |||| |||||||||||||| || |||||||||    
T  5931151 cgtttcaggtatgcagctatccgaactgaaccaaagttataattcggttaaccgttttcttacctatgaaccgaaccgaaccaaaactaatattttgaac 5931250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 81 - 248
Target Start/End: Complemental strand, 40293078 - 40292911
Alignment:
Q  81 taggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttga 180  Q
    ||||||||||||||||| ||||||||||   || |||||||||| |||||  | || | |||||||| || | ||  |||||||||||||||| |||||     
T  40293078 taggggtgggcatggttcggttaaccatcaaaaccgaatcgaactgaaccaaattgataaaatggttcgggaaaactgaaccgaaccgtttaaagtttgg 40292979  T
Q  181 agctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaacc 248  Q
    |  || || |||||| || |||||||| ||||||||||| |||| ||  ||||||||| |||| ||||    
T  40292978 aagtaaccaaactgaacctaagttatggttcggttaaccatttgcttacctattaaccgaaccaaacc 40292911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 81 - 179
Target Start/End: Complemental strand, 11413140 - 11413042
Alignment:
Q  81 taggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttg 179  Q
    |||| |||||||||||| |||||||||||||||||||| |||||| ||||  |||||||| || |||  |||||| ||||| ||| |||||||| ||||    
T  11413140 taggagtgggcatggttcggttaaccatattaatcgaaccgaaccaaaccaaagtgttgagattgttcagaataaccgaactgaaacgtttaagatttg 11413042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 332 - 478
Target Start/End: Complemental strand, 28309614 - 28309469
Alignment:
Q  332 agggtcttgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaa 431  Q
    ||||||||| ||||||||  ||| | | ||||| |||| |||| ||||  | ||||||||| ||  ||||||| ||| ||||| ||||||  || |||||    
T  28309614 agggtcttgctaacttgtatcctaagggcacaagataaaaaactaaatgtaaaaatttaactttaaaaattgtacatacataaccttaaagattaaaaaa 28309515  T
Q  432 cttatattttcaatacaatatttattgtttgtttctattttaagatc 478  Q
    ||||| |||||||||||||||||||| |||  |||||||||||||||    
T  28309514 cttattttttcaatacaatatttatt-tttagttctattttaagatc 28309469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 162 - 266
Target Start/End: Complemental strand, 10223102 - 10222993
Alignment:
Q  162 cgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaacca-----aaccgaaccaaaaccaa 256  Q
    |||||||||| |||| || ||||| ||||||||| ||||||||||| |||||||||||||||  || ||||  |||||     |||||||||||||||||    
T  10223102 cgaaccgtttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaaccgttttcttatctaagaaccaaatcgaaccgaaccaaaaccaa 10223003  T
Q  257 aattttgaac 266  Q
     |||||||||    
T  10223002 tattttgaac 10222993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 472
Target Start/End: Original strand, 44543279 - 44543415
Alignment:
Q  335 gtcttgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaactt 434  Q
    |||||||||| ||||||  | | ||||||| |||| |||| |||   || ||||||| |||| |||||||||||||||||| |||||||||  |||||||    
T  44543279 gtcttgttaatttgtgctataaggacacaagataaaaaactaaacgtagtaatttaatcttgaaaattgtgcattcataatattaaaagtt-taaaactt 44543377  T
Q  435 atattttcaatacaatatttattgtttgtttctatttt 472  Q
    |||||||| || ||| ||||||| |||  |||||||||    
T  44543378 atattttcgatgcaacatttattttttagttctatttt 44543415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 131
Target Start/End: Original strand, 13840729 - 13840780
Alignment:
Q  80 gtaggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccg 131  Q
    |||||||||||||||||| ||||||||||||||||||||  |||||||||||    
T  13840729 gtaggggtgggcatggttcggttaaccatattaatcgaactgaaccgaaccg 13840780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 248
Target Start/End: Complemental strand, 18021853 - 18021762
Alignment:
Q  157 cgaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaacc 248  Q
    ||||||||||||||| | | ||| ||||| ||||||| | ||||||||||| || |||||||| |||||||  |||||||||| ||||||||    
T  18021853 cgaaccgaaccgttttaaggttggagctaaccgaactcaaccaaagttatggtttggttaaccatttgtttacctattaaccataccgaacc 18021762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 483
Target Start/End: Complemental strand, 52247538 - 52247431
Alignment:
Q  376 aaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgtttgtttctattttaag 475  Q
    ||||||| ||| ||||  || ||||||||||||||||| |||||||||   ||| |||| | |||| |||||||||||||||||||  |||||||||||     
T  52247538 aaataaaaaaaattaattttagaaattgtgcattcatattcttaaaagcctaaatacttgtctttttaatacaatatttattgtttaattctattttaaa 52247439  T
Q  476 atccttat 483  Q
    ||| ||||    
T  52247438 atctttat 52247431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 333 - 483
Target Start/End: Original strand, 50163960 - 50164110
Alignment:
Q  333 gggtcttgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaac 432  Q
    |||||| ||||||||||||||| | |  |||  |||| |||| ||||| || ||||| | ||||||||||||||||||||||| | ||||  | ||||      
T  50163960 gggtctcgttaacttgtgccctaagggtacatgataaaaaactaaatatagtaatttgatcttggaaattgtgcattcataatttgaaaaacttaaaagt 50164059  T
Q  433 ttatattttcaatacaatatttattgtttgtttctattttaagatccttat 483  Q
    |||| |||||||||||| ||||||| |||  ||| | ||| ||||||||||    
T  50164060 ttatcttttcaatacaacatttattttttaattccacttttagatccttat 50164110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 483
Target Start/End: Original strand, 14998752 - 14998851
Alignment:
Q  383 gaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgtttgtttctattttaagatcctta 482  Q
    ||||||||| |||  ||||||| ||||||||||||||||| || |||||||| | ||||||||| ||||| |||| |||  |||||||||| ||| ||||    
T  14998752 gaaatttaatcttaaaaattgtacattcataatcttaaaaatttaaaaactt-tcttttcaatataatatatattttttaattctattttatgattctta 14998850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 158 - 241
Target Start/End: Original strand, 13840770 - 13840853
Alignment:
Q  158 gaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaa 241  Q
    ||||||||||||| || ||||| |  || || |||||| ||||||||||| ||||||||||| |||||||  ||||||||||||    
T  13840770 gaaccgaaccgttaaaagtttggaaataaccaaactgaaccaaagttatggttcggttaaccatttgtttacctattaaccaaa 13840853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 248
Target Start/End: Complemental strand, 44774081 - 44773955
Alignment:
Q  122 aaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaaccgt 221  Q
    |||||||||| | | ||||||||||| | || || ||||||||||  ||| | ||||| || || ||||||||| ||||||||||| ||  ||||||| |    
T  44774081 aaccgaaccgaaattttgaaatggttcgcaaaaaccgaaccgaacaattttaagtttggagttaaccgaactgaaccaaagttatggtttagttaaccat 44773982  T
Q  222 ttgtttgtctattaaccaaaccgaacc 248  Q
    ||| ||  |||||||||| ||||||||    
T  44773981 ttgcttaactattaaccataccgaacc 44773955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 477
Target Start/End: Original strand, 12790037 - 12790157
Alignment:
Q  360 cacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcatt---cataatcttaaaagttcaaaaacttatattttcaatacaatatttat 456  Q
    ||||| ||||||||  ||||  ||||||||||| ||| |||||||| |||   ||||| || ||||  | ||||| |||| |||||||||||||||||||    
T  12790037 cacaagataagaaattaaatgtagaaatttaactttgtaaattgtgtattattcataacctaaaaatcttaaaaatttatcttttcaatacaatatttat 12790136  T
Q  457 tgtttgtttctattttaagat 477  Q
    | |||  | ||||||||||||    
T  12790137 tatttaatcctattttaagat 12790157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 455
Target Start/End: Original strand, 55016142 - 55016204
Alignment:
Q  393 cttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatattta 455  Q
    ||||||||||||||||||||||||||||||   |||||  |||| |||||||| ||| |||||    
T  55016142 cttggaaattgtgcattcataatcttaaaaacacaaaagtttatcttttcaatgcaacattta 55016204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 482
Target Start/End: Complemental strand, 50170572 - 50170484
Alignment:
Q  393 cttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgtttgtttctattttaagatcctta 482  Q
    |||||||||||||||||||   |||||||| ||  |||| |||| ||||||||| || ||||||| |||  |||||||||||| ||||||    
T  50170572 cttggaaattgtgcattcaatgtcttaaaaatttcaaaagttatcttttcaatataaaatttatt-ttttattctattttaagctcctta 50170484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 431
Target Start/End: Original strand, 23317316 - 23317380
Alignment:
Q  367 taagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaa 431  Q
    |||||||| ||||| || ||||| | |||| |||||||||||||||| |||||||| || |||||    
T  23317316 taagaaactaaatatagtaatttgatcttgaaaattgtgcattcatagtcttaaaaatttaaaaa 23317380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 3e-61; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 93 - 260
Target Start/End: Complemental strand, 8550766 - 8550599
Alignment:
Q  93 tggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttgaagctatccgaac 192  Q
    ||||| ||||||||||||||||||||  ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||| ||| ||||||    
T  8550766 tggttcggttaaccatattaatcgaactgaaccgaaccgaagtgttgaaatggtttgaaataaccgaaccgaaccgtttaaggtttgaaactaaccgaac 8550667  T
Q  193 tgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaaccaaaaccaaaatt 260  Q
    ||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  8550666 tgaaccaaagttatggttcggttaaccgtttgtttgcctatttaccaaaccgaaccaaaaccaaaatt 8550599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 82 - 266
Target Start/End: Original strand, 11353645 - 11353823
Alignment:
Q  82 aggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttgaa 181  Q
    |||||||||||||||| |||||||||||||     || |||||||||||| |||||||||||||||||||||     |||||||||||| | |||||| |    
T  11353645 aggggtgggcatggttcggttaaccatatt-----aaccgaaccgaaccgaagtgttgaaatggtttggaat-----aaccgaaccgttcatggtttgga 11353734  T
Q  182 gctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaac----caaaccgaaccaaaaccaaaattttgaac 266  Q
     ||| ||||||||| ||||||||||| |||||||||||||||| ||| ||||||||    | |||||||||||||||||||||||||||    
T  11353735 actaaccgaactgaaccaaagttatggttcggttaaccgtttgcttgcctattaaccgaaccaaccgaaccaaaaccaaaattttgaac 11353823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 360 - 484
Target Start/End: Original strand, 2457900 - 2458024
Alignment:
Q  360 cacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgt 459  Q
    ||||| ||||||||| ||||||||||||||||| |||| |||||||||||||||| |||||||| | || | ||||| |||||||||||||||| |||||    
T  2457900 cacaagataagaaactaaataaagaaatttaacattgggaattgtgcattcataaccttaaaagcttaagagcttatcttttcaatacaatattgattgt 2457999  T
Q  460 ttgtttctattttaagatccttatt 484  Q
    ||  |||||||||||||||||||||    
T  2458000 ttaattctattttaagatccttatt 2458024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 80 - 245
Target Start/End: Original strand, 46400007 - 46400167
Alignment:
Q  80 gtaggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttg 179  Q
    |||||||||||||||||| ||||||||||||||| ||||     |||||||  ||||||||||||||| |||| ||  |||||||||||||||| |||||    
T  46400007 gtaggggtgggcatggttcggttaaccatattaaccgaa-----ccgaaccaaagtgttgaaatggttcggaaaaactgaaccgaaccgtttaaagtttg 46400101  T
Q  180 aagctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccga 245  Q
     |  || || |||||| ||||||||||| ||||||||||| |||| ||  ||||||||||||||||    
T  46400102 gaagtaaccaaactgaaccaaagttatggttcggttaaccatttgcttacctattaaccaaaccga 46400167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 334 - 483
Target Start/End: Original strand, 23031693 - 23031841
Alignment:
Q  334 ggtcttgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaact 433  Q
    |||||||||||||||||||    || ||||| ||||||||| ||||||||||||| ||| ||| |||||||||||||| || |||||||  | ||||| |    
T  23031693 ggtcttgttaacttgtgcctaagtg-cacaagataagaaactaaataaagaaattcaactttgaaaattgtgcattcacaaccttaaaaacttaaaaatt 23031791  T
Q  434 tatattttcaatacaatatttattgtttgtttctattttaagatccttat 483  Q
    ||| |||| ||||||||||||||||||   ||||||||||||||| ||||    
T  23031792 tatctttttaatacaatatttattgttcaattctattttaagatcattat 23031841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 154 - 266
Target Start/End: Complemental strand, 32030421 - 32030304
Alignment:
Q  154 aatcgaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccg-----aacc 248  Q
    |||||||||||||| |||| |||||||| ||||||||||||| ||||||||||| |||| ||||||||||| ||  |||||| ||||||||     ||||    
T  32030421 aatcgaaccgaaccatttagggtttgaaactatccgaactgaaccaaagttatggttcgattaaccgtttgcttacctattagccaaaccgaaccgaacc 32030322  T
Q  249 aaaaccaaaattttgaac 266  Q
    ||||||||||||||||||    
T  32030321 aaaaccaaaattttgaac 32030304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 81 - 248
Target Start/End: Original strand, 31845082 - 31845249
Alignment:
Q  81 taggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttga 180  Q
    ||||||||| ||||||| ||||||||||   |||| || ||||||||| |  | || | ||||| || ||||||||||||||||||||||||| |||||     
T  31845082 taggggtggacatggttcggttaaccattaaaatccaaccgaaccgaatcaaattgctcaaatgtttcggaataatcgaaccgaaccgtttaaagtttgg 31845181  T
Q  181 agctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaacc 248  Q
    |  || || |||||| ||||||||||| ||||||||||| |||| ||  ||||||||||||| |||||    
T  31845182 aagtaaccaaactgaaccaaagttatggttcggttaaccatttgcttacctattaaccaaactgaacc 31845249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 122 - 266
Target Start/End: Complemental strand, 45920190 - 45920046
Alignment:
Q  122 aaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaaccgt 221  Q
    |||||||||| | | ||||||||||| || | ||  ||| |||||||||| |||| || ||||| ||||||||| ||||||||||| || ||||||||||    
T  45920190 aaccgaaccgaaattttgaaatggttcgggaaaactgaatcgaaccgtttcaggtatggagctaaccgaactgaaccaaagttatggttaggttaaccgt 45920091  T
Q  222 ttgtttgtctattaaccaaaccgaaccaaaaccaaaattttgaac 266  Q
    ||  ||  |||| |||| ||||||||||||||||| |||||||||    
T  45920090 tttcttacctatgaaccgaaccgaaccaaaaccaatattttgaac 45920046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 336 - 483
Target Start/End: Complemental strand, 3399380 - 3399234
Alignment:
Q  336 tcttgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaactta 435  Q
    |||| |||||||||||||| | | ||||| |||| |||| | |   ||||| |||| ||| |||||| |||||||| ||||||||||||| |||||||||    
T  3399380 tctttttaacttgtgccctaagggcacaagataaaaaacaatacgtagaaacttaatcttagaaattttgcattca-aatcttaaaagtttaaaaactta 3399282  T
Q  436 tattttcaatacaatatttattgtttgtttctattttaagatccttat 483  Q
    | |||||||| ||||||||||| ||  |||||||||| ||||||||||    
T  3399281 tgttttcaatgcaatatttatttttcatttctatttttagatccttat 3399234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 360 - 483
Target Start/End: Complemental strand, 32650188 - 32650065
Alignment:
Q  360 cacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgt 459  Q
    ||||| ||||||||| ||||| |||||||| | |||||||||||||||| |||||||||||||  | ||||| |||| |||||||||||| ||||||| |    
T  32650188 cacaagataagaaactaaatatagaaatttgatcttggaaattgtgcatgcataatcttaaaaacttaaaaatttatcttttcaatacaacatttatttt 32650089  T
Q  460 ttgtttctattttaagatccttat 483  Q
    ||  ||| | ||| ||||||||||    
T  32650088 ttaattccacttttagatccttat 32650065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 122 - 248
Target Start/End: Complemental strand, 33382490 - 33382364
Alignment:
Q  122 aaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaaccgt 221  Q
    |||||||||| | | ||||||||||| || | || ||||||||| ||||| | ||||||||||| ||||||||| ||||||||||| || |||||||| |    
T  33382490 aaccgaaccgtaattttgaaatggttcgggaaaaccgaaccgaatcgtttcaagtttgaagctaaccgaactgaaccaaagttatggtttggttaaccat 33382391  T
Q  222 ttgtttgtctattaaccaaaccgaacc 248  Q
    ||| ||  |||||||||| ||||||||    
T  33382390 ttgcttacctattaaccataccgaacc 33382364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 332 - 483
Target Start/End: Original strand, 36783189 - 36783334
Alignment:
Q  332 agggtcttgttaacttgtgcccttatga--cacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaa 429  Q
    ||||||||||||| ||||||||||| |   ||||| ||||||||| ||||||||||||||||| || ||||||||||||||        || |  |||||    
T  36783189 agggtcttgttaatttgtgcccttagggggcacaagataagaaactaaataaagaaatttaactttagaaattgtgcattc--------aatacctcaaa 36783280  T
Q  430 aacttatattttcaatacaatatttattgtttgtttctattttaagatccttat 483  Q
    || |||| |||||||||||||||||||| |||  |||||||||||||| |||||    
T  36783281 aagttatcttttcaatacaatatttattatttaattctattttaagattcttat 36783334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 122 - 263
Target Start/End: Complemental strand, 45067667 - 45067526
Alignment:
Q  122 aaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaaccgt 221  Q
    |||||||||| | | ||||||||||| || | ||  |||||||||||||| |||| || ||||| ||||||||| ||||||||||| |||||||||||||    
T  45067667 aaccgaaccgaaattttgaaatggttcgggaaaactgaaccgaaccgtttcaggtatgcagctaaccgaactgaaccaaagttatggttcggttaaccgt 45067568  T
Q  222 ttgtttgtctattaaccaaaccgaaccaaaaccaaaattttg 263  Q
    ||  ||   ||| |||| ||||||| ||||||||| ||||||    
T  45067567 tttcttacatatgaaccgaaccgaatcaaaaccaatattttg 45067526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 81 - 248
Target Start/End: Original strand, 32745839 - 32746005
Alignment:
Q  81 taggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttga 180  Q
    ||||||||||||||||| ||||||||  |  || |||  |||||| ||||| | | ||||||||||| |||| ||| |||||||||||||| | |||||     
T  32745839 taggggtgggcatggttcggttaacccaaaaaaccgac-cgaaccaaaccgaaattttgaaatggttcggaaaaattgaaccgaaccgttttaagtttgg 32745937  T
Q  181 agctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaacc 248  Q
    ||||| ||||||||| ||||||||||| || || ||||| |||  ||  |||||||||| ||||||||    
T  32745938 agctaaccgaactgaaccaaagttatggtttggctaaccatttacttacctattaaccataccgaacc 32746005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 384 - 457
Target Start/End: Complemental strand, 44599473 - 44599400
Alignment:
Q  384 aaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttatt 457  Q
    ||||||||||||  |||||||||||| |||| |||||||  | |||||||||||||||||||||||||||||||    
T  44599473 aaatttaaccttaaaaattgtgcatttataaccttaaaatcttaaaaacttatattttcaatacaatatttatt 44599400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 120 - 239
Target Start/End: Original strand, 28681850 - 28681969
Alignment:
Q  120 cgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaacc 219  Q
    |||||||||| | | | |||||||||||||| | |||||||| ||||||||| | ||||| | ||| ||||||||| ||||||||||| || ||||||||    
T  28681850 cgaaccgaactgaaattttgaaatggtttgggaaaatcgaactgaaccgtttcaagtttggatctaaccgaactgaaccaaagttatggtttggttaacc 28681949  T
Q  220 gtttgtttgtctattaacca 239  Q
     |||| ||  ||||||||||    
T  28681950 atttgcttacctattaacca 28681969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 137 - 266
Target Start/End: Original strand, 35086406 - 35086535
Alignment:
Q  137 ttgaaatggtttggaataatcgaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaa 236  Q
    ||||||||||| || | ||  |||||||||| ||| |||| || || || ||||||||| ||||||||||| |||||||||||||||  ||  |||| ||    
T  35086406 ttgaaatggttcgggaaaactgaaccgaaccatttcaggtatggagttaaccgaactgaaccaaagttatggttcggttaaccgttttcttacctatgaa 35086505  T
Q  237 ccaaaccgaaccaaaaccaaaattttgaac 266  Q
    || ||| ||||||||| ||| |||||||||    
T  35086506 ccgaactgaaccaaaatcaatattttgaac 35086535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 366 - 470
Target Start/End: Complemental strand, 42934228 - 42934125
Alignment:
Q  366 ataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgtttgttt 465  Q
    ||||||||| ||||||| ||||||||| ||| ||||||| |||||||||  ||||||  | ||||| |||| |||| ||||||||||||||||||| ||     
T  42934228 ataagaaactaaataaa-aaatttaacattgaaaattgtacattcataacattaaaaacttaaaaagttatttttttaatacaatatttattgtttatta 42934130  T
Q  466 ctatt 470  Q
    |||||    
T  42934129 ctatt 42934125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 130
Target Start/End: Complemental strand, 32030455 - 32030408
Alignment:
Q  83 ggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaacc 130  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  32030455 ggggtgggcatggttcggttaaccatattaaccgaatcgaaccgaacc 32030408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 248
Target Start/End: Original strand, 40474332 - 40474500
Alignment:
Q  80 gtaggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttg 179  Q
    ||||||||||| |||||| ||||||||  |  || |||||| || |||| || | | ||||||||||| || | |||| |||| ||| |||| |||||      
T  40474332 gtaggggtgggtatggttcggttaacccaaaaaaccgaatcaaatcgaatcgaaattttgaaatggttcgggaaaatcaaaccaaactgtttcaggttgt 40474431  T
Q  180 aagctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaacc 248  Q
     ||||| ||||||||| ||||||||||| || |||||||| |||| ||   ||||||||| ||||||||    
T  40474432 gagctaaccgaactgaaccaaagttatggtttggttaaccatttgcttacttattaaccataccgaacc 40474500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 482
Target Start/End: Complemental strand, 16831684 - 16831599
Alignment:
Q  397 gaaattgtgcattcataatctt-aaaagttcaaaaacttatattttcaatacaatatttattgtttgtttctattttaagatcctta 482  Q
    |||||||||||||||  ||||| ||||||| ||||||||||||||||||||||| | ||||  ||| |||||||||| | |||||||    
T  16831684 gaaattgtgcattcaatatcttgaaaagtt-aaaaacttatattttcaatacaaaacttatgttttatttctatttttacatcctta 16831599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 483
Target Start/End: Original strand, 35265310 - 35265424
Alignment:
Q  360 cacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgt 459  Q
    ||||| |||| |||| ||||||| ||| ||||||| | ||||| |||||||||||||||||||        |||||||||||  ||| ||||||||||||    
T  35265310 cacaaaataaaaaactaaataaaaaaaattaacct-gaaaattatgcattcataatcttaaaa--------acttatatttttgataaaatatttattgt 35265400  T
Q  460 ttgtttctattttaagatccttat 483  Q
    || ||| |||| ||||||||||||    
T  35265401 ttatttttattataagatccttat 35265424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 197 - 266
Target Start/End: Original strand, 27856574 - 27856643
Alignment:
Q  197 ccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaaccaaaaccaaaattttgaac 266  Q
    ||||||||||| ||| |||||||||||  || ||||| || | ||||||||||||||||| |||||||||    
T  27856574 ccaaagttatggttcagttaaccgttttcttatctatgaatcgaaccgaaccaaaaccaatattttgaac 27856643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 8e-53; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 101 - 266
Target Start/End: Original strand, 27510753 - 27510918
Alignment:
Q  101 ttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttgaagctatccgaactgatccaa 200  Q
    ||||||||||||| |||| | ||| |||||| ||||||||||||||| ||||||| ||||||||||| ||||||||||||| ||| ||||||||| ||||    
T  27510753 ttaaccatattaaccgaaccaaactgaaccgaagtgttgaaatggttcggaataaccgaaccgaaccatttaaggtttgaaactaaccgaactgaaccaa 27510852  T
Q  201 agttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaaccaaaaccaaaattttgaac 266  Q
    ||||||| |||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||    
T  27510853 agttatggttcggttaaccgtttgcttgcctattaaccgaaccgaaccaaaaccaaaattttgaac 27510918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 80 - 267
Target Start/End: Original strand, 2736628 - 2736815
Alignment:
Q  80 gtaggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaat-----aatcgaaccgaaccgtttaag 174  Q
    |||||||||||||||||| |||||||||||||||  ||| | |||||||||| |||||||||||| ||||||||     || ||||||||||||||||||    
T  2736628 gtaggggtgggcatggttcggttaaccatattaactgaaccaaaccgaaccgaagtgttgaaatgatttggaataaccgaaccgaaccgaaccgtttaag 2736727  T
Q  175 gtttgaagctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaaccaaaaccaaaattttgaact 267  Q
     |||| | ||| ||||||||| ||||||||||| |||||||||| ||||||||| |||||     ||||||||||||||||||||||||||||    
T  2736728 atttggaactaaccgaactgaaccaaagttatggttcggttaactgtttgtttgcctatt-----aaccgaaccaaaaccaaaattttgaact 2736815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 78 - 265
Target Start/End: Original strand, 38370070 - 38370256
Alignment:
Q  78 aagtaggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtt 177  Q
    ||||||||||||||||| || | |||| |||||||| ||||   || ||| ||| | ||||||||||||| | |||||| ||||||||||||||||||||    
T  38370070 aagtaggggtgggcatgattcgattaatcatattaaccgaactaaatcgagccgaaatgttgaaatggttcgaaataattgaaccgaaccgtttaaggtt 38370169  T
Q  178 tgaagctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaaccaaaaccaaaattttgaa 265  Q
    ||||  || ||||||||| ||||||||||| |||  ||||||||||| ||||||||||||  ||||||||||||| ||||||||||||    
T  38370170 tgaaattaaccgaactgaaccaaagttatggttc-attaaccgtttgcttgtctattaactgaaccgaaccaaaatcaaaattttgaa 38370256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 82 - 266
Target Start/End: Complemental strand, 40143461 - 40143278
Alignment:
Q  82 aggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttgaa 181  Q
    |||||||||||||||| ||||||||  |  || |||| |||||||||| | | | || ||||||||  ||| |||||||||||||||||| |||| || |    
T  40143461 aggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaactgaaattttaaaatggttccgaa-aatcgaaccgaaccgtttcaggtatgca 40143363  T
Q  182 gctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaaccaaaaccaaaattttgaac 266  Q
     ||| ||||||||| ||||||||||| |||||||||||||||  ||   ||| |||| ||||||||||||||||| |||||||||    
T  40143362 actaaccgaactgaaccaaagttatggttcggttaaccgttttcttacatatgaaccgaaccgaaccaaaaccaatattttgaac 40143278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 387 - 483
Target Start/End: Original strand, 48818455 - 48818551
Alignment:
Q  387 tttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgtttgtttctattttaagatccttat 483  Q
    |||||| |||||||||||||||||||||  ||||||||| |||||||||| |||||||| || ||||||||||||  ||||||||||||||||||||    
T  48818455 tttaactttggaaattgtgcattcataacattaaaagtttaaaaacttatcttttcaatgcattatttattgtttaattctattttaagatccttat 48818551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 117 - 223
Target Start/End: Original strand, 46171631 - 46171737
Alignment:
Q  117 aatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggtta 216  Q
    ||||||||||||||| | | |||||||||||||| | || ||||||||||||||| |||| || ||||| ||||||||| ||||||||||| ||||||||    
T  46171631 aatcgaaccgaaccgaaattttgaaatggtttgggaaaaccgaaccgaaccgttttaggtatggagctaaccgaactgaaccaaagttatgtttcggtta 46171730  T
Q  217 accgttt 223  Q
    |||||||    
T  46171731 accgttt 46171737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 81 - 251
Target Start/End: Complemental strand, 35653470 - 35653305
Alignment:
Q  81 taggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttga 180  Q
    ||||||||||||||||| |||||||    ||||   |||| |||||||||| | | || ||||||||||||| || |||| |||||||||| | |||||     
T  35653470 taggggtgggcatggttcggttaac----ttaaaaaaatcaaaccgaaccgaaattttaaaatggtttggaa-aaccgaatcgaaccgtttcaagtttgg 35653376  T
Q  181 agctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaaccaaa 251  Q
    ||||||||||||||| ||||||||||| || |||||||| |||| ||  |||||||||| |||||||||||    
T  35653375 agctatccgaactgaaccaaagttatggtttggttaaccatttgcttacctattaaccataccgaaccaaa 35653305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 157 - 266
Target Start/End: Original strand, 35258245 - 35258359
Alignment:
Q  157 cgaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaacc-----aaaccgaaccaaa 251  Q
    |||||| |||||||||||||||| | ||| ||||||||| ||||||||||  |||||||||||||||| |||||||||||||      |||||||| |||    
T  35258245 cgaaccaaaccgtttaaggtttggaactaaccgaactgaaccaaagttataattcggttaaccgtttgcttgtctattaaccgaactgaaccgaactaaa 35258344  T
Q  252 accaaaattttgaac 266  Q
    |||||||||||||||    
T  35258345 accaaaattttgaac 35258359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 341 - 483
Target Start/End: Complemental strand, 17354628 - 17354494
Alignment:
Q  341 ttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatattt 440  Q
    |||||||||||||| | | ||||| |||| |||| ||||| ||||| ||||||||||||||||||||||   ||||||||||        |||||| |||    
T  17354628 ttaacttgtgccctaagggcacaagataaaaaactaaatatagaaacttaaccttggaaattgtgcattttaaatcttaaaa--------acttatcttt 17354537  T
Q  441 tcaatacaatatttattgtttgtttctattttaagatccttat 483  Q
    ||||||||||||||||| |||| ||||||||||||||| ||||    
T  17354536 tcaatacaatatttattatttgattctattttaagatctttat 17354494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 332 - 460
Target Start/End: Original strand, 29431770 - 29431899
Alignment:
Q  332 agggtcttgtt-aacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaa 430  Q
    ||||||||||| |||||||||||| | | ||||| ||||||||| ||||||||||||| ||| ||| |||||||||||||| ||  ||||||  | ||||    
T  29431770 agggtcttgtttaacttgtgccctaagggcacaagataagaaactaaataaagaaattcaactttgaaaattgtgcattcacaactttaaaaacttaaaa 29431869  T
Q  431 acttatattttcaatacaatatttattgtt 460  Q
    | ||||  ||||||||||||||||||||||    
T  29431870 atttatcatttcaatacaatatttattgtt 29431899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 120 - 266
Target Start/End: Complemental strand, 31879656 - 31879510
Alignment:
Q  120 cgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaacc 219  Q
    |||||||||| | | | |||||||||||||| | |||| ||||||||||||| | || |  ||||| ||||||||| ||||||||||| |||| ||||||    
T  31879656 cgaaccgaactgaaattttgaaatggtttgggaaaatcaaaccgaaccgtttcaagtatagagctaaccgaactgaaccaaagttatggttcgattaacc 31879557  T
Q  220 gtttgtttgtctattaaccaaaccgaaccaaaaccaaaattttgaac 266  Q
    ||||  ||  |||| |||| |||||||||||||| || |||||||||    
T  31879556 gttttcttacctatgaaccgaaccgaaccaaaactaatattttgaac 31879510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 154 - 260
Target Start/End: Original strand, 48995734 - 48995840
Alignment:
Q  154 aatcgaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaaccaaaac 253  Q
    |||||||||||||||||||||||||| |  || || |||||| ||||| ||||| ||||||||||| |||  ||| ||||||||| |||| |||||||||    
T  48995734 aatcgaaccgaaccgtttaaggtttggaattaaccaaactgaaccaaaattatggttcggttaaccattttcttgcctattaaccgaaccaaaccaaaac 48995833  T
Q  254 caaaatt 260  Q
    |||||||    
T  48995834 caaaatt 48995840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 81 - 246
Target Start/End: Original strand, 23516065 - 23516230
Alignment:
Q  81 taggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttga 180  Q
    ||||| ||||||||||| |||||| |  |  |||| ||||||||||||||| | | ||||||||||| || | |||||||||||||| ||| | |||||     
T  23516065 tagggatgggcatggttcggttaatccaaaaaatcaaatcgaaccgaaccgaaattttgaaatggttcgggaaaatcgaaccgaaccattttaagtttgg 23516164  T
Q  181 agctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaa 246  Q
    ||||| ||||||||| ||||||||||| || |||||| | |||  ||  |||||||||| ||||||    
T  23516165 agctaaccgaactgaaccaaagttatggtttggttaatcattttcttacctattaaccataccgaa 23516230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 342 - 477
Target Start/End: Original strand, 6942406 - 6942541
Alignment:
Q  342 taacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatatttt 441  Q
    ||||||||| ||| | | ||||| ||||||||| ||||  || |||||||  ||||||||||||||||| | |||||||||||| |||||||||| ||||    
T  6942406 taacttgtgtcctaagggcacaagataagaaactaaatgtagtaatttaattttggaaattgtgcattcttgatcttaaaagtttaaaaacttatctttt 6942505  T
Q  442 caatacaatatttattgtttgtttctattttaagat 477  Q
    |||| | | ||||||| |||  ||||||||| ||||    
T  6942506 caatgccacatttattttttaattctatttttagat 6942541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 120 - 266
Target Start/End: Original strand, 6582333 - 6582479
Alignment:
Q  120 cgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaacc 219  Q
    |||||||||||  | | |||||||| || || | || ||||||| |||||||||||| |  ||||| ||||||||| ||||||||||  |||||||||||    
T  6582333 cgaaccgaaccaaaattttgaaatgattcgggaaaaccgaaccgcaccgtttaaggtatagagctaaccgaactgaaccaaagttatagttcggttaacc 6582432  T
Q  220 gtttgtttgtctattaaccaaaccgaaccaaaaccaaaattttgaac 266  Q
    ||||   |  |||| |||| ||||||||||||||||| |||||||||    
T  6582433 gttttcctacctatgaaccgaaccgaaccaaaaccaatattttgaac 6582479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 376 - 483
Target Start/End: Original strand, 6942218 - 6942317
Alignment:
Q  376 aaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgtttgtttctattttaag 475  Q
    ||||||||||||||||| |||  ||||||||||||||||||||||||        |||||| ||||||||||||||||||||||||  || |||||||||    
T  6942218 aaataaagaaatttaactttgagaattgtgcattcataatcttaaaa--------acttatcttttcaatacaatatttattgtttaattttattttaag 6942309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 339 - 482
Target Start/End: Original strand, 37861166 - 37861309
Alignment:
Q  339 tgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatat 438  Q
    |||||||||||||||||| | |||||  | |||||||||||  ||||| ||||  ||||||||||||||||||   |||| |||||| ||||| |||| |    
T  37861166 tgttaacttgtgcccttaaggcacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcattcaatgtcttgaaagtttaaaaagttattt 37861265  T
Q  439 tttcaatacaatatttattgtttgtttctattttaagatcctta 482  Q
    ||||||||||| | ||||  |||  |||| |||| |||||||||    
T  37861266 tttcaatacaaaacttatgttttaattctttttttagatcctta 37861309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 81 - 251
Target Start/End: Original strand, 38935730 - 38935895
Alignment:
Q  81 taggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttga 180  Q
    |||||||||| ||| |||||||||||  |  ||||||||||||| |||||| | | ||||||||||| |||| ||     | ||||||||| | |||||     
T  38935730 taggggtgggtatgttttggttaacccaaaaaatcgaatcgaactgaaccgaaattttgaaatggttcggaaaaa-----ctgaaccgtttcaagtttgg 38935824  T
Q  181 agctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaaccaaa 251  Q
    ||||| | ||||| | ||||||||||| || |||||||| |||| ||  |||||||||| |||||||||||    
T  38935825 agctaactgaactaaaccaaagttatggtttggttaaccatttgcttacctattaaccataccgaaccaaa 38935895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 157 - 266
Target Start/End: Original strand, 12389204 - 12389313
Alignment:
Q  157 cgaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaaccaaaaccaa 256  Q
    |||||||||| ||||||||  || ||||| ||||||||| ||||||||||| |||||||||| ||||  ||  |||| |||| |||||||||| || |||    
T  12389204 cgaaccgaactgtttaaggcatggagctaaccgaactgaaccaaagttatggttcggttaactgttttcttacctatgaaccgaaccgaaccataatcaa 12389303  T
Q  257 aattttgaac 266  Q
     |||||||||    
T  12389304 tattttgaac 12389313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 358 - 483
Target Start/End: Complemental strand, 27574718 - 27574593
Alignment:
Q  358 gacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttatt 457  Q
    ||||||| |||||||||  || | ||||||||||| ||  |||||||||||||||||  ||||||  | ||||  |||| |||||||| |||||||||||    
T  27574718 gacacaagataagaaactgaacatagaaatttaactttaaaaattgtgcattcataactttaaaatcttaaaattttatcttttcaattcaatatttatt 27574619  T
Q  458 gtttgtttctattttaagatccttat 483  Q
     |||  ||||||||||||||| ||||    
T  27574618 atttaattctattttaagatctttat 27574593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 78 - 223
Target Start/End: Complemental strand, 39267550 - 39267410
Alignment:
Q  78 aagtaggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtt 177  Q
    |||||||||||||  ||||| |||||||||||||||  ||| |||||||||     || |||||||| || ||||||| ||||| |||||||||||| ||    
T  39267550 aagtaggggtgggtgtggttcggttaaccatattaactgaaccgaaccgaa-----gtattgaaatgattcggaataaccgaactgaaccgtttaagatt 39267456  T
Q  178 tgaagctatccgaactgatccaaagttatgcttcggttaaccgttt 223  Q
    |||| | |   |||||||  |||||||||  |||||||||||||||    
T  39267455 tgaaacgaattgaactgaatcaaagttatcgttcggttaaccgttt 39267410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 48995696 - 48995748
Alignment:
Q  79 agtaggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccg 131  Q
    |||||||||||| |||||| ||||||||||||||| |||||||||||||||||    
T  48995696 agtaggggtgggtatggttcggttaaccatattaaccgaatcgaaccgaaccg 48995748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 341 - 456
Target Start/End: Original strand, 19399840 - 19399955
Alignment:
Q  341 ttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatattt 440  Q
    |||||||||||||||| |||||||  | || | ||||||| ||||| |||   ||||||||||||||||||   |||| ||| || |||||||||| |||    
T  19399840 ttaacttgtgcccttaagacacaagtttagtagccaaatatagaaacttatttttggaaattgtgcattcaatgtcttgaaaatttaaaaacttattttt 19399939  T
Q  441 tcaatacaatatttat 456  Q
    ||||||||| ||||||    
T  19399940 tcaatacaaaatttat 19399955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 339 - 482
Target Start/End: Complemental strand, 46964006 - 46963863
Alignment:
Q  339 tgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatat 438  Q
    |||||||||||||||||| | |||||  | |||||||||||  ||||| ||||  |||||||| |||||||||   |||| |||||| ||||| |||| |    
T  46964006 tgttaacttgtgcccttaaggcacaagtttagaaaccaaatgtagaaacttaattttggaaatcgtgcattcaatgtcttgaaagtttaaaaagttattt 46963907  T
Q  439 tttcaatacaatatttattgtttgtttctattttaagatcctta 482  Q
    ||||||||||| | ||||  |||  |||| |||| |||||||||    
T  46963906 tttcaatacaaaacttatgttttaattctttttttagatcctta 46963863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 22772559 - 22772502
Alignment:
Q  122 aaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttg 179  Q
    |||||||| | ||||||||||||||| | ||||| |||||||||||||||||||||||    
T  22772559 aaccgaactgaagtgttgaaatggttcgaaataaccgaaccgaaccgtttaaggtttg 22772502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 483
Target Start/End: Original strand, 7162154 - 7162305
Alignment:
Q  334 ggtcttgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaatt--gtgcattcataatcttaaaagttcaaaaa 431  Q
    |||||||||||||| | ||||||  |||||| |||| |||| ||||  | |||||||| |||  |||||  |||||||||| |  ||||||||| ||| |    
T  7162154 ggtcttgttaacttatacccttagaacacaagataataaactaaatttaaaaatttaatcttaaaaattatgtgcattcattagattaaaagtttaaaca 7162253  T
Q  432 cttatattttcaatacaatatttattgtttgtttctattttaagatccttat 483  Q
     |||| | ||||||  |||||||||| |||  ||||||||||||||||||||    
T  7162254 attatctcttcaatgtaatatttattttttaattctattttaagatccttat 7162305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 479
Target Start/End: Original strand, 19594463 - 19594515
Alignment:
Q  427 aaaaacttatattttcaatacaatatttattgtttgtttctattttaagatcc 479  Q
    |||||||||| |||||||||||||||||||||| |  ||||||||||||||||    
T  19594463 aaaaacttatcttttcaatacaatatttattgtataattctattttaagatcc 19594515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 334 - 441
Target Start/End: Original strand, 42600580 - 42600686
Alignment:
Q  334 ggtcttgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaact 433  Q
    ||||||||||||||||| | | | ||||||  ||||||||| ||||  |||||||||| ||||||||||||  ||| |||| ||||||| ||  ||||||    
T  42600580 ggtcttgttaacttgtgtc-taaggacacacgataagaaactaaatgtagaaatttaatcttggaaattgtatatttataaccttaaaaatttcaaaact 42600678  T
Q  434 tatatttt 441  Q
    ||||||||    
T  42600679 tatatttt 42600686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 81 - 248
Target Start/End: Complemental strand, 49706569 - 49706402
Alignment:
Q  81 taggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttga 180  Q
    ||||||||||||||||| ||||||||||   || |||| ||||| |||||  | || | |||||||| || | ||  |||||||||||||||| |||||     
T  49706569 taggggtgggcatggttcggttaaccatcaaaaccgaaccgaactgaaccaaattgataaaatggttcgggaaaactgaaccgaaccgtttaaagtttgg 49706470  T
Q  181 agctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaacc 248  Q
    |  || || |||| | || |||||||| ||||||||||| |||| ||  ||||||||| |||| ||||    
T  49706469 aagtaaccaaactaaacctaagttatggttcggttaaccatttgcttacctattaaccgaaccaaacc 49706402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 397 - 484
Target Start/End: Original strand, 54612611 - 54612697
Alignment:
Q  397 gaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgtttgtttctattttaagatccttatt 484  Q
    ||||||||| ||||||||  ||||||||| |||| |||||||||||||| ||| ||||||| |||  ||||| ||| |||||||||||    
T  54612611 gaaattgtgtattcataaatttaaaagtttaaaatcttatattttcaatgcaacatttatt-tttaattctagttttagatccttatt 54612697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 266
Target Start/End: Complemental strand, 16048165 - 16048056
Alignment:
Q  159 aaccgaaccgtttaaggtttgaagctat--ccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaaccaaaaccaa 256  Q
    ||||||||||||| || | || ||||||  ||||| ||| ||||||||||| || ||||| ||||||  ||| |||| |||| |||| ||||||||||||    
T  16048165 aaccgaaccgtttcagttatggagctataaccgaattgaaccaaagttatggtttggttatccgtttccttgcctatgaaccgaaccaaaccaaaaccaa 16048066  T
Q  257 aattttgaac 266  Q
     |||||||||    
T  16048065 tattttgaac 16048056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 398 - 483
Target Start/End: Complemental strand, 39835790 - 39835705
Alignment:
Q  398 aaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgtttgtttctattttaagatccttat 483  Q
    |||||||| |||||||||||||||||   |||||||||| |||| |||  |||||||||| |||  ||||||||| | ||||||||    
T  39835790 aaattgtgtattcataatcttaaaagcctaaaaacttatcttttaaatgtaatatttattttttaattctatttttaaatccttat 39835705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 245
Target Start/End: Complemental strand, 9117440 - 9117328
Alignment:
Q  133 agtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtcta 232  Q
    ||||||||||| ||| |||| ||  |||||||||||||||| ||||| |  || || |||||| | ||| ||||| ||||||||||| |||||||   ||    
T  9117440 agtgttgaaatagttcggaaaaactgaaccgaaccgtttaaagtttggaagtaaccaaactgaactaaaattatggttcggttaaccatttgtttactta 9117341  T
Q  233 ttaaccaaaccga 245  Q
     ||||||||||||    
T  9117340 gtaaccaaaccga 9117328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 483
Target Start/End: Complemental strand, 2720642 - 2720536
Alignment:
Q  376 aaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgtttgtttctattttaag 475  Q
    ||||| ||||||| ||  |||||||||||||||| | |||||| |||| | ||||| |||| | |||||| ||||||||| | |||  ||||||||| ||    
T  2720642 aaatatagaaattaaattttggaaattgtgcatttagaatctt-aaagcttaaaaagttatctcttcaatgcaatatttaatttttaattctatttttag 2720544  T
Q  476 atccttat 483  Q
    ||||||||    
T  2720543 atccttat 2720536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 482
Target Start/End: Complemental strand, 30617689 - 30617574
Alignment:
Q  367 taagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgtttgtttc 466  Q
    |||||||||||||| |||| |||   |||||||||||||||||||   |||||||||||  |||| ||||  |||||||| || ||||| | | |  |||    
T  30617689 taagaaaccaaatatagaagttttttcttggaaattgtgcattcaatctcttaaaagtttcaaaagttatcctttcaatataaaatttactttctaattc 30617590  T
Q  467 tattttaagatcctta 482  Q
    ||||||||| ||||||    
T  30617589 tattttaagctcctta 30617574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 482
Target Start/End: Original strand, 30666835 - 30666978
Alignment:
Q  339 tgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatat 438  Q
    |||||||||||||||||  | |||||  |||||||||||||  ||||  ||    |||||| |||||||||||   |||||||||||  |||| |||||     
T  30666835 tgttaacttgtgcccttgaggcacaagttaagaaaccaaatgtagaaggttttttttggaacttgtgcattcaatgtcttaaaagttgcaaaagttatac 30666934  T
Q  439 tttcaatacaatatttattgtttgtttctattttaagatcctta 482  Q
    || ||||| || ||||||| ||  ||||||||||||| ||||||    
T  30666935 ttccaatataaaatttatttttaatttctattttaagctcctta 30666978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 441
Target Start/End: Complemental strand, 35147481 - 35147422
Alignment:
Q  382 agaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatatttt 441  Q
    ||||||||||  |||||||||||| |||||||||||||||  || |||||||||| ||||    
T  35147481 agaaatttaattttggaaattgtggattcataatcttaaagttttaaaaacttatttttt 35147422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 483
Target Start/End: Original strand, 33977801 - 33977867
Alignment:
Q  417 ttaaaagttcaaaaacttatattttcaatacaatatttattgtttgtttctattttaagatccttat 483  Q
    ||||||||| ||||| |||| |||||||| ||||||||||| |||  || |||||||| ||||||||    
T  33977801 ttaaaagtttaaaaatttatcttttcaatgcaatatttattttttaattatattttaatatccttat 33977867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 35258206 - 35258256
Alignment:
Q  81 taggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccg 131  Q
    |||||||| |||||||| ||||||||||||||| |||| |||||| |||||    
T  35258206 taggggtgagcatggttcggttaaccatattaaccgaaccgaaccaaaccg 35258256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 484
Target Start/End: Complemental strand, 52355953 - 52355863
Alignment:
Q  394 ttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgtttgtttctattttaagatccttatt 484  Q
    ||||||||||||||||||   |||||||||||  |||| ||||||||||| || || ||||||| ||  |||| |||||||| ||| ||||    
T  52355953 ttggaaattgtgcattcaatgtcttaaaagtttcaaaagttatattttcattataaaatttatttttaatttccattttaagctccctatt 52355863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 475
Target Start/End: Complemental strand, 13435516 - 13435383
Alignment:
Q  342 taacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatatttt 441  Q
    ||||| ||||||||  |||| ||  |||||||||||||| | || |||   ||||||||||||  ||| |   |||||||||||  ||||||||| ||||    
T  13435516 taactcgtgcccttgggacataagttaagaaaccaaatataaaagttttttcttggaaattgtatatttaatttcttaaaagttttaaaacttatgtttt 13435417  T
Q  442 caatacaatatttattgtttgtttctattttaag 475  Q
    |||||||| | ||||| ||| |||| ||||||||    
T  13435416 caatacaaaacttattttttatttccattttaag 13435383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 45065772 - 45065731
Alignment:
Q  83 ggggtgggcatggtttggttaaccatattaatcgaatcgaac 124  Q
    ||||||||||||||| ||||||||||||||| |||| |||||    
T  45065772 ggggtgggcatggttcggttaaccatattaaccgaaccgaac 45065731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 49642206 - 49642158
Alignment:
Q  81 taggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaac 129  Q
    ||||||||||||||||| | |||| |||||||| ||||||||| |||||    
T  49642206 taggggtgggcatggttcgattaatcatattaaccgaatcgaatcgaac 49642158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 81 - 266
Target Start/End: Original strand, 9539921 - 9540101
Alignment:
Q  81 taggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttga 180  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||  ||||||||||||||| |||||||     |||||||||||||||||||     
T  9539921 taggggtgggcatggtttggttaaccatattaaccgaaccgaaccgaacctaagtgttgaaatggttcggaataa-----ccgaaccgtttaaggtttgg 9540015  T
Q  181 agctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaaccaaaaccaaaattttgaac 266  Q
    | ||| | ||||||| ||||||||||| |||||||||||||||  |||  |||||||| |||||||||||||||||||||||||||    
T  9540016 aactaactgaactgaaccaaagttatggttcggttaaccgtttacttgcttattaaccgaaccgaaccaaaaccaaaattttgaac 9540101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 126 - 266
Target Start/End: Complemental strand, 26053728 - 26053583
Alignment:
Q  126 gaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaaccgtttgt 225  Q
    |||||| ||||||||||||||| |||||||  |||||||||||||||||||||| | ||| ||||| ||| ||||||||||| ||||||||||||||||     
T  26053728 gaaccgaagtgttgaaatggttcggaataaatgaaccgaaccgtttaaggtttggaactaaccgaattgaaccaaagttatggttcggttaaccgtttgc 26053629  T
Q  226 ttgtctat-----taaccaaaccgaaccaaaaccaaaattttgaac 266  Q
    ||| ||||     ||||| |||||||||||||||||||||||||||    
T  26053628 ttgcctattaacctaaccgaaccgaaccaaaaccaaaattttgaac 26053583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 336 - 483
Target Start/End: Complemental strand, 40330289 - 40330144
Alignment:
Q  336 tcttgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaactta 435  Q
    |||||||||||||||||||  |  ||||| |||| |||| ||||||| ||||| ||| ||  ||||||||||||||||||||||||| || |||||||||    
T  40330289 tcttgttaacttgtgccctggt--cacaaaataaaaaactaaataaataaattcaactttaaaaattgtgcattcataatcttaaaaatttaaaaactta 40330192  T
Q  436 tattttcaatacaatatttattgtttgtttctattttaagatccttat 483  Q
    |||||||||||||||||||||| ||| ||| |||||||| ||| ||||    
T  40330191 tattttcaatacaatatttattatttatttttattttaatatcattat 40330144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 81 - 248
Target Start/End: Complemental strand, 28734137 - 28733971
Alignment:
Q  81 taggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttga 180  Q
    ||||||||||||| ||| ||||||| ||||||| ||||  ||||||||| | ||||||||||||||| ||||||| |||||| ||||||||| | ||||     
T  28734137 taggggtgggcatagttcggttaactatattaaccgaactgaaccgaactgaagtgttgaaatggttcggaataaccgaacc-aaccgtttaggatttgg 28734039  T
Q  181 agctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaacc 248  Q
    | ||| ||||||| | ||||||||||| || ||||||||||||| ||| |||||| | ||||||||||    
T  28734038 aactaaccgaactaaaccaaagttatggtttggttaaccgtttgcttgcctattatctaaaccgaacc 28733971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 122 - 251
Target Start/End: Original strand, 15254944 - 15255073
Alignment:
Q  122 aaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaaccgt 221  Q
    |||||||||| |||||| |||||||| |||||||  |||||||||| ||||||||||||| ||| ||||||||| ||||||||||| |||||| ||||||    
T  15254944 aaccgaaccgaagtgttaaaatggttcggaataactgaaccgaaccatttaaggtttgaaactaaccgaactgaaccaaagttatggttcggtcaaccgt 15255043  T
Q  222 ttgtttgtctattaaccaaaccgaaccaaa 251  Q
    ||| |||   ||||||| ||||||||||||    
T  15255044 ttgcttggtcattaaccgaaccgaaccaaa 15255073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 120 - 266
Target Start/End: Complemental strand, 33691786 - 33691640
Alignment:
Q  120 cgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaacc 219  Q
    ||||||||| || | | ||||||||||| || | || ||||||||||||||| |||| || ||||| ||||||||| ||||||||||| |||||||||||    
T  33691786 cgaaccgaatcgaaattttgaaatggttcgggaaaaccgaaccgaaccgtttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaacc 33691687  T
Q  220 gtttgtttgtctattaaccaaaccgaaccaaaaccaaaattttgaac 266  Q
    ||||  ||  |||| |||| ||||||||||||||||| |||||||||    
T  33691686 gttttcttacctatgaaccgaaccgaaccaaaaccaatattttgaac 33691640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 117 - 266
Target Start/End: Original strand, 10902985 - 10903134
Alignment:
Q  117 aatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggtta 216  Q
    ||||||||||||||| | | ||||||||||| || | || ||||||||||||||| |||| || ||||| ||||||||| ||||||||||| ||||||||    
T  10902985 aatcgaaccgaaccgaaattttgaaatggttcgggaaaaccgaaccgaaccgtttcaggtatggagctaaccgaactgaaccaaagttatggttcggtta 10903084  T
Q  217 accgtttgtttgtctattaaccaaaccgaaccaaaaccaaaattttgaac 266  Q
    |||||||  ||   ||| |||| || |||||||||||||| |||||||||    
T  10903085 accgttttcttacatatgaaccgaatcgaaccaaaaccaatattttgaac 10903134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 122 - 271
Target Start/End: Original strand, 40346948 - 40347097
Alignment:
Q  122 aaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaaccgt 221  Q
    ||||||| || | ||||||||||||| || | || |||||| |||||||||||||||||| ||| ||||||||| ||| ||||||| || | ||||||||    
T  40346948 aaccgaatcgaattgttgaaatggttagggaaaaccgaaccaaaccgtttaaggtttgaaactaaccgaactgaaccagagttatgatttgattaaccgt 40347047  T
Q  222 ttgtttgtctattaaccaaaccgaaccaaaaccaaaattttgaactaaaa 271  Q
    ||| ||  |||| |||| ||||||||||||||||| ||||||||| ||||    
T  40347048 ttgcttacctatgaaccgaaccgaaccaaaaccaatattttgaaccaaaa 40347097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 149 - 260
Target Start/End: Original strand, 10226772 - 10226883
Alignment:
Q  149 ggaataatcgaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaacc 248  Q
    ||||||| |||||| |||||||||||||||| | ||| ||||||||| ||||| ||||| |||||||||||||||  ||| ||||||||| |||||||||    
T  10226772 ggaataaccgaaccaaaccgtttaaggtttggaactaaccgaactgaaccaaaattatggttcggttaaccgttttcttgcctattaaccgaaccgaacc 10226871  T
Q  249 aaaaccaaaatt 260  Q
    | ||||||||||    
T  10226872 agaaccaaaatt 10226883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 360 - 483
Target Start/End: Original strand, 12398040 - 12398164
Alignment:
Q  360 cacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaactt-atattttcaatacaatatttattg 458  Q
    ||||| ||||||||| ||| ||||||||||||||||||||||||| ||||||||| |||||||| | |||||||| |  |||||||||||  |||||||     
T  12398040 cacaagataagaaactaaaaaaagaaatttaaccttggaaattgtacattcataaccttaaaagcttaaaaacttaactttttcaatacataatttatta 12398139  T
Q  459 tttgtttctattttaagatccttat 483  Q
    |||  || |||||||||||||||||    
T  12398140 tttaattatattttaagatccttat 12398164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 333 - 478
Target Start/End: Original strand, 33274215 - 33274360
Alignment:
Q  333 gggtcttgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaac 432  Q
    |||||||||||||||||||||| | | ||||| ||||||||| ||||  | ||| ||||||||  ||||||||||||   || |||||||  | |||||     
T  33274215 gggtcttgttaacttgtgccctaagggcacaagataagaaactaaatgtaaaaacttaaccttaaaaattgtgcattttaaaccttaaaatcttaaaaat 33274314  T
Q  433 ttatattttcaatacaatatttattgtttgtttctattttaagatc 478  Q
    |||| |||||||| ||||||||||| ||| ||||||||||||||||    
T  33274315 ttatcttttcaatgcaatatttattatttatttctattttaagatc 33274360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 334 - 483
Target Start/End: Original strand, 12892559 - 12892702
Alignment:
Q  334 ggtcttgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaact 433  Q
    ||||||||||| ||||||||| |   ||||| ||||||||| |||||||||| ||||      |||||| ||||||||||| |||||||  | |||||||    
T  12892559 ggtcttgttaatttgtgccctaagagcacaagataagaaactaaataaagaatttta------gaaattatgcattcataaccttaaaaacttaaaaact 12892652  T
Q  434 tatattttcaatacaatatttattgtttgtttctattttaagatccttat 483  Q
    ||||||||||||| |||||||||| |||  || |||||||| ||||||||    
T  12892653 tatattttcaatataatatttattatttaattttattttaaaatccttat 12892702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 187 - 271
Target Start/End: Original strand, 27114947 - 27115031
Alignment:
Q  187 ccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaaccaaaaccaaaattttgaactaaaa 271  Q
    ||||||||| ||||||||||| ||||||||||| |||  ||  ||||||||| ||||||||||||||||||||||||||| ||||    
T  27114947 ccgaactgaaccaaagttatggttcggttaaccatttacttccctattaaccgaaccgaaccaaaaccaaaattttgaaccaaaa 27115031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 120 - 214
Target Start/End: Complemental strand, 17564538 - 17564444
Alignment:
Q  120 cgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggt 214  Q
    |||||||||||| | | ||||||||||| || | |||||||||||||||||| |||| || ||||| ||||||||| ||||||||||| ||||||    
T  17564538 cgaaccgaaccgaaattttgaaatggttcgggaaaatcgaaccgaaccgtttcaggtatggagctaaccgaactgaaccaaagttatggttcggt 17564444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 122 - 247
Target Start/End: Original strand, 42475669 - 42475789
Alignment:
Q  122 aaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaaccgt 221  Q
    |||||||||| ||| ||||||||||| |||||||     ||||||||||||||||||| | ||| ||||| ||| ||||||||||| ||||||||||| |    
T  42475669 aaccgaaccgaagttttgaaatggttcggaataa-----ccgaaccgtttaaggtttggaactaaccgaattgaaccaaagttatggttcggttaaccat 42475763  T
Q  222 ttgtttgtctattaaccaaaccgaac 247  Q
    |||  |  ||||||||| ||||||||    
T  42475764 ttgcatacctattaaccgaaccgaac 42475789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 120 - 248
Target Start/End: Original strand, 19147544 - 19147672
Alignment:
Q  120 cgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaacc 219  Q
    |||||||||||| | | |||||||| || || | ||  |||||||||||||| |||| || ||||| ||||||||| ||||||||||| |||||||||||    
T  19147544 cgaaccgaaccgaaattttgaaatgattcgggaaaactgaaccgaaccgtttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaacc 19147643  T
Q  220 gtttgtttgtctattaaccaaaccgaacc 248  Q
     |||  ||  |||| ||||||||||||||    
T  19147644 attttcttacctatgaaccaaaccgaacc 19147672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 159 - 271
Target Start/End: Original strand, 34360431 - 34360543
Alignment:
Q  159 aaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaaccaaaaccaaaa 258  Q
    ||||||||||||| |||  || |||||  |||||||| ||||||||||  |||||||||||||||  ||  |||| |||| ||||||||||||||||| |    
T  34360431 aaccgaaccgtttcaggcatggagctaatcgaactgaaccaaagttatagttcggttaaccgttttcttacctataaaccgaaccgaaccaaaaccaata 34360530  T
Q  259 ttttgaactaaaa 271  Q
    |||||||| ||||    
T  34360531 ttttgaacaaaaa 34360543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 81 - 248
Target Start/End: Complemental strand, 4885655 - 4885488
Alignment:
Q  81 taggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttga 180  Q
    ||||||||||||||||| ||||||||||   || |||| ||||| |||||  | || | |||||||| || | ||| |||||||||||||||| |||||     
T  4885655 taggggtgggcatggttcggttaaccatcaaaaccgaaccgaactgaaccaaattgataaaatggttcgggaaaattgaaccgaaccgtttaaagtttgg 4885556  T
Q  181 agctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaacc 248  Q
    |  || || |||||| || |||||||| ||||||||||| |||| ||  ||||||||| |||| ||||    
T  4885555 aagtaaccaaactgaacctaagttatggttcggttaaccatttgcttacctattaaccgaaccaaacc 4885488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 358 - 483
Target Start/End: Original strand, 18310479 - 18310607
Alignment:
Q  358 gacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaa---tattt 454  Q
    ||||||| ||||||||  ||||  | |||||||| ||| |||||||| |||||||||  ||||||| | |||||||||| ||||||||||||   |||||    
T  18310479 gacacaaaataagaaattaaatgtaaaaatttaatcttagaaattgtacattcataactttaaaagattaaaaacttatcttttcaatacaatattattt 18310578  T
Q  455 attgtttgtttctattttaagatccttat 483  Q
    ||||| |  ||||||||||||||| ||||    
T  18310579 attgtctaattctattttaagatctttat 18310607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 81 - 167
Target Start/End: Original strand, 27114873 - 27114958
Alignment:
Q  81 taggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaacc 167  Q
    ||||||||||||||||| ||||||||||||||| |||| ||||| |||||  | ||||||||||||| ||||||| ||||| |||||    
T  27114873 taggggtgggcatggttcggttaaccatattaaccgaaccgaactgaacc-aaatgttgaaatggttcggaataaccgaactgaacc 27114958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 188 - 266
Target Start/End: Original strand, 36368562 - 36368640
Alignment:
Q  188 cgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaaccaaaaccaaaattttgaac 266  Q
    ||||| || ||||||||||| |||||||||||||||  || ||||| |||| ||||||||||||||||| |||||||||    
T  36368562 cgaaccgaaccaaagttatggttcggttaaccgttttcttatctatgaaccgaaccgaaccaaaaccaatattttgaac 36368640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 142 - 247
Target Start/End: Original strand, 40614641 - 40614746
Alignment:
Q  142 atggtttggaataatcgaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaa 241  Q
    |||||| |||| ||| |||||||||||||||| ||||| |  || || |||||| ||||||||||| ||||||||||| |||  || |||||||||||||    
T  40614641 atggttcggaaaaattgaaccgaaccgtttaaagtttggaagtaaccaaactgaaccaaagttatggttcggttaaccatttacttatctattaaccaaa 40614740  T
Q  242 ccgaac 247  Q
     |||||    
T  40614741 tcgaac 40614746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 356 - 483
Target Start/End: Original strand, 23736907 - 23737037
Alignment:
Q  356 atgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaa---tat 452  Q
    |||||||||  |||||||| ||||  | || ||||| |||  |||||||||||||||||  ||||||| | |||||||||| ||||||||| ||   |||    
T  23736907 atgacacaaattaagaaactaaatgtaaaagtttaatcttaaaaattgtgcattcataactttaaaagattaaaaacttatcttttcaatataatattat 23737006  T
Q  453 ttattgtttgtttctattttaagatccttat 483  Q
    |||||||||  ||||||||||||||| ||||    
T  23737007 ttattgtttaattctattttaagatctttat 23737037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 80 - 178
Target Start/End: Original strand, 16587531 - 16587629
Alignment:
Q  80 gtaggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggttt 178  Q
    |||||||||||||||||| ||||||||||   || |||| ||||||||||   | || | |||||||| ||||||| ||||||||||||||||| ||||    
T  16587531 gtaggggtgggcatggttcggttaaccatcaaaaccgaaccgaaccgaactaaattgctcaaatggttcggaataaccgaaccgaaccgtttaaagttt 16587629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 81 - 219
Target Start/End: Original strand, 19127283 - 19127421
Alignment:
Q  81 taggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttga 180  Q
    |||||||||||||| || ||||||||  |  || |||| |||||| ||||| | | |||||||| || || | || ||||||||||||||| |||| ||     
T  19127283 taggggtgggcatgattcggttaacctaagaaaccgaaccgaaccaaaccgaaattttgaaatgattcgggaaaaccgaaccgaaccgttttaggtatgg 19127382  T
Q  181 agctatccgaactgatccaaagttatgcttcggttaacc 219  Q
    ||||| ||||||||| |||||||| |  |||||||||||    
T  19127383 agctaaccgaactgaaccaaagttgttgttcggttaacc 19127421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 159 - 266
Target Start/End: Original strand, 14333977 - 14334083
Alignment:
Q  159 aaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaaccaaaaccaaaa 258  Q
    ||||||||||||| |||| || ||||| | ||||||| ||||||||||| ||||||||  |||||  ||  ||| | ||| ||||||||||||||||| |    
T  14333977 aaccgaaccgtttcaggtatggagctaactgaactgaaccaaagttatggttcggttactcgttttcttaccta-tgaccgaaccgaaccaaaaccaata 14334075  T
Q  259 ttttgaac 266  Q
    ||||||||    
T  14334076 ttttgaac 14334083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 224
Target Start/End: Complemental strand, 21184194 - 21184110
Alignment:
Q  140 aaatggtttggaataatcgaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaaccgtttg 224  Q
    |||||||| |||| ||  |||||||||||||||| ||||| |  || || |||||| ||||||||||| ||||||||||| ||||    
T  21184194 aaatggttcggaaaaactgaaccgaaccgtttaaagtttggaagtaaccaaactgaaccaaagttatggttcggttaaccatttg 21184110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 439 - 477
Target Start/End: Original strand, 404436 - 404474
Alignment:
Q  439 tttcaatacaatatttattgtttgtttctattttaagat 477  Q
    |||||||||||||||||||||||  ||||||||||||||    
T  404436 tttcaatacaatatttattgtttaattctattttaagat 404474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 422
Target Start/End: Original strand, 11254287 - 11254376
Alignment:
Q  332 agggtcttgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaa 422  Q
    ||||||||||||||||||| | | | ||||||| |||| |||  ||||||| ||| ||||||||| ||| |||||||||| || |||||||    
T  11254287 agggtcttgttaacttgtgtcttaaagacacaagataaaaaattaaataaa-aaaattaaccttgtaaagtgtgcattcacaaccttaaaa 11254376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 33238170 - 33238112
Alignment:
Q  190 aactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaacc 248  Q
    |||||| ||||||||||| ||| |||||||||||| |||  |||||||| |||||||||    
T  33238170 aactgaaccaaagttatggttcagttaaccgtttgcttgcatattaaccgaaccgaacc 33238112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 471
Target Start/End: Complemental strand, 36604134 - 36604061
Alignment:
Q  398 aaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgtttgtttctattt 471  Q
    ||||||||||||||  ||||||||||||  | || |||||||||||||| || ||||||| ||  |||||||||    
T  36604134 aaattgtgcattcaatatcttaaaagtttcagaaattatattttcaatataaaatttatttttaatttctattt 36604061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 8e-50; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 332 - 483
Target Start/End: Complemental strand, 35813946 - 35813794
Alignment:
Q  332 agggtcttgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaa 431  Q
    ||||||||||||||||||||||| | | || || ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  35813946 agggtcttgttaacttgtgccctaagggcaaaagataagaaactaaataaagaaatttgaccttggaaattgtgcattcataatcttaaaagttaaaaaa 35813847  T
Q  432 ctta-tattttcaatacaatatttattgtttgtttctattttaagatccttat 483  Q
    |||| ||||||||||| |||||||||||||| |||||||||||||||| ||||    
T  35813846 cttactattttcaatataatatttattgtttatttctattttaagatctttat 35813794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 333 - 483
Target Start/End: Original strand, 43592652 - 43592794
Alignment:
Q  333 gggtcttgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaac 432  Q
    |||||||||||||||||||||| | | ||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||| |||        ||||||    
T  43592652 gggtcttgttaacttgtgccctaagggcacaagataagaaactaaataaagaaagttaaccttggaaattgtgcattcataacctt--------aaaaac 43592743  T
Q  433 ttatattttcaatacaatatttattgtttgtttctattttaagatccttat 483  Q
    |||| ||||||||||||||||||||||||  ||||||||||||||| ||||    
T  43592744 ttatcttttcaatacaatatttattgtttcattctattttaagatctttat 43592794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 80 - 266
Target Start/End: Complemental strand, 5270605 - 5270424
Alignment:
Q  80 gtaggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttg 179  Q
    ||||||||||| |||||| ||||||||||||||  |||  ||| |||||     |||||||||||||| |||||||  ||||||||| ||||||||| ||    
T  5270605 gtaggggtgggtatggttcggttaaccatattacccgacccgacccgaa-----gtgttgaaatggttcggaataactgaaccgaactgtttaaggtatg 5270511  T
Q  180 aagctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaaccaaaaccaaaattttgaac 266  Q
     | ||| | ||||| | ||||||||||| |||  ||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  5270510 gaactaactgaactaaaccaaagttatggttcaattaaccgtttgcttgtctattaaccaaaccgaaccaaaatcaaaattttgaac 5270424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 381 - 482
Target Start/End: Original strand, 28226171 - 28226272
Alignment:
Q  381 aagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgtttgtttctattttaagatcct 480  Q
    ||||||||||| ||| ||||||||| ||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||  |||||||||||||||||    
T  28226171 aagaaatttaaacttagaaattgtgtattcataatcttaaaagtttaaaaacttatcttttcaatataatatttattgtttaattctattttaagatcct 28226270  T
Q  481 ta 482  Q
    ||    
T  28226271 ta 28226272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 335 - 455
Target Start/End: Original strand, 33440792 - 33440912
Alignment:
Q  335 gtcttgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaactt 434  Q
    |||||||||||||||||||||| | ||||| ||||||||  ||||||||||||||||| |||  ||||||||||| |||| |||||||  | ||||||||    
T  33440792 gtcttgttaacttgtgcccttagggcacaatataagaaaataaataaagaaatttaacattgagaattgtgcatttataaccttaaaatcttaaaaactt 33440891  T
Q  435 atattttcaatacaatattta 455  Q
    || ||||||||||||||||||    
T  33440892 atcttttcaatacaatattta 33440912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 120 - 266
Target Start/End: Original strand, 31365492 - 31365638
Alignment:
Q  120 cgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaacc 219  Q
    |||||||||||| | | |||||||||||||| | |||||||||||||||||| | || || ||||| ||||||||| ||||||||||| |||||||||||    
T  31365492 cgaaccgaaccgaaattttgaaatggtttgggaaaatcgaaccgaaccgtttcaagtatggagctaaccgaactgaaccaaagttatggttcggttaacc 31365591  T
Q  220 gtttgtttgtctattaaccaaaccgaaccaaaaccaaaattttgaac 266  Q
    ||||  ||  |||| |||  ||||||||||||| ||| |||||||||    
T  31365592 gttttcttacctatgaactgaaccgaaccaaaatcaatattttgaac 31365638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 336 - 483
Target Start/End: Original strand, 43664754 - 43664901
Alignment:
Q  336 tcttgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaactta 435  Q
    ||||||| ||||||||||||| |  |||| |||| |||  ||||  |||||||||| |||  |||||||||||||| ||||||||||||| |||||||||    
T  43664754 tcttgttgacttgtgcccttagggtacaagataaaaaattaaatgtagaaatttaatcttaaaaattgtgcattcaaaatcttaaaagtttaaaaactta 43664853  T
Q  436 tattttcaatacaatatttattgtttgtttctattttaagatccttat 483  Q
    ||||||||||  |||||||||| |||  ||||||||| ||||| ||||    
T  43664854 tattttcaatgtaatatttattttttaattctatttttagatcattat 43664901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 335 - 436
Target Start/End: Original strand, 32839038 - 32839139
Alignment:
Q  335 gtcttgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaactt 434  Q
    |||||| |||||| |||||| | | ||||| ||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||| || ||||||||    
T  32839038 gtcttgataacttatgccctaagggcacaagataagaaactaaataaagaaatttaaccttagaaattgtgcattcataaccttaaaaattaaaaaactt 32839137  T
Q  435 at 436  Q
    ||    
T  32839138 at 32839139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 36669821 - 36669912
Alignment:
Q  84 gggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaagg 175  Q
    ||||||||||||||  |||||||||||||| |||| |||||||||||| | ||||||||||||||| ||||| |||||| ||||||||||||    
T  36669821 gggtgggcatggttcagttaaccatattaaccgaaccgaaccgaaccgaaatgttgaaatggtttgaaataaccgaaccaaaccgtttaagg 36669912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 80 - 166
Target Start/End: Original strand, 25396359 - 25396445
Alignment:
Q  80 gtaggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaac 166  Q
    |||||||||||||||||| |||||| |||||||| |||||| ||| |||||| | |||||||||||||  |||||||||||||||||    
T  25396359 gtaggggtgggcatggttcggttaagcatattaaccgaatcaaactgaaccggaatgttgaaatggttaagaataatcgaaccgaac 25396445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 81 - 266
Target Start/End: Complemental strand, 2154168 - 2153983
Alignment:
Q  81 taggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttga 180  Q
    |||||||||||||| || ||||||||  |  || |||| |||||||| | | | | ||||||  |||||| | || ||||||||||||| | |||| ||     
T  2154168 taggggtgggcatgattcggttaacccaaaaaaccgaaccgaaccgagctgaaattttgaaaaagtttgggaaaaccgaaccgaaccgtgttaggtatgg 2154069  T
Q  181 agctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaaccaaaaccaaaattttgaac 266  Q
    ||||| ||||||||| ||||||||||| |||||||||||||||  ||  |||| || | |||||||||||||| || |||||||||    
T  2154068 agctaaccgaactgaaccaaagttatggttcggttaaccgttttcttacctatgaatcgaaccgaaccaaaacaaatattttgaac 2153983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 354 - 483
Target Start/End: Original strand, 11252540 - 11252669
Alignment:
Q  354 ttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatt 453  Q
    ||||| ||||| ||||||||| ||||   | ||||||| ||| ||||||||| |||||||||||||||||||  ||||||||| |||||||||||  |||    
T  11252540 ttatggcacaagataagaaactaaatgtggtaatttaatcttagaaattgtgaattcataatcttaaaagtttcaaaacttatcttttcaatacaccatt 11252639  T
Q  454 tattgtttgtttctattttaagatccttat 483  Q
    |||| | |  ||||||||| ||||||||||    
T  11252640 tattttctaattctatttttagatccttat 11252669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 398 - 481
Target Start/End: Original strand, 8335244 - 8335327
Alignment:
Q  398 aaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgtttgtttctattttaagatcctt 481  Q
    ||||| |||||||||||| ||||||||| ||||||||||||||||||| ||| ||||||| |||  ||||||||| ||||||||    
T  8335244 aaattatgcattcataatgttaaaagtttaaaaacttatattttcaatgcaacatttattttttaattctatttttagatcctt 8335327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 382 - 477
Target Start/End: Complemental strand, 9886949 - 9886853
Alignment:
Q  382 agaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaa-cttatattttcaatacaatatttattgtttgtttctattttaagat 477  Q
    ||||||||||||||| |||||||||||||||||  ||||||  | ||||| ||||| |||||||||||||||| ||| |||  ||||||||||||||    
T  9886949 agaaatttaaccttgaaaattgtgcattcataacattaaaacctgaaaaaacttatcttttcaatacaatattaattatttaattctattttaagat 9886853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 339 - 482
Target Start/End: Original strand, 5577970 - 5578113
Alignment:
Q  339 tgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatat 438  Q
    |||||| ||||| ||||| | |||||  | |||||||||||   |||||||||  |||||||||||||||| |  ||||| |||||| |||||||||| |    
T  5577970 tgttaatttgtgtccttaaggcacaagtttagaaaccaaatgtcgaaatttaattttggaaattgtgcatttaatatcttgaaagtttaaaaacttattt 5578069  T
Q  439 tttcaatacaatatttattgtttgtttctattttaagatcctta 482  Q
    ||||||||||| ||||||  |||  |||| |||| |||||||||    
T  5578070 tttcaatacaaaatttatgttttaattctctttttagatcctta 5578113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 367 - 477
Target Start/End: Original strand, 4283410 - 4283520
Alignment:
Q  367 taagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgtttgtttc 466  Q
    |||||||| ||||  ||||||||||| ||  ||||||||| ||||||| |||||||  | ||||||||||||||| |||| |||||||||| |||  |||    
T  4283410 taagaaactaaatgtagaaatttaactttaaaaattgtgctttcataaccttaaaatcttaaaaacttatatttttaatataatatttattatttaattc 4283509  T
Q  467 tattttaagat 477  Q
    ||||| |||||    
T  4283510 tatttcaagat 4283520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 337 - 457
Target Start/End: Original strand, 3369866 - 3369986
Alignment:
Q  337 cttgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttat 436  Q
    |||||||||||||||||| | |||| || ||||||||| ||||  ||||||| || |||  ||||||||||||||||||||||| |  |  |||||||||    
T  3369866 cttgttaacttgtgccctaaagacataagataagaaactaaatgtagaaattcaatcttaaaaattgtgcattcataatcttaacaactttaaaacttat 3369965  T
Q  437 attttcaatacaatatttatt 457  Q
      ||||||| ||| |||||||    
T  3369966 catttcaatgcaacatttatt 3369986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 335 - 438
Target Start/End: Original strand, 2674257 - 2674360
Alignment:
Q  335 gtcttgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaactt 434  Q
    |||||| ||| ||||| ||||| || | || ||||||||| ||||  ||||||||||  ||| |||||||||||||||||||||||||||| ||| | ||    
T  2674257 gtcttgctaatttgtgtccttaggatataagataagaaactaaatgtagaaatttaatattgaaaattgtgcattcataatcttaaaagtttaaacattt 2674356  T
Q  435 atat 438  Q
    ||||    
T  2674357 atat 2674360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 360 - 422
Target Start/End: Complemental strand, 30561083 - 30561021
Alignment:
Q  360 cacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaa 422  Q
    ||||| ||||||||| ||||  ||||||| || ||||||||||||||||||||||||||||||    
T  30561083 cacaagataagaaactaaatgtagaaattcaatcttggaaattgtgcattcataatcttaaaa 30561021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 398 - 484
Target Start/End: Original strand, 37624997 - 37625083
Alignment:
Q  398 aaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgtttgtttctattttaagatccttatt 484  Q
    ||||||||||||||  ||||||||||||  |||| |||||||||||||| || ||||||| ||  |||| |||||||| ||||||||    
T  37624997 aaattgtgcattcaatatcttaaaagttttaaaagttatattttcaatataaaatttatttttaatttccattttaagctccttatt 37625083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 248
Target Start/End: Original strand, 43177057 - 43177226
Alignment:
Q  79 agtaggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggttt 178  Q
    ||||||||||||||||||| ||||||||||   || |||| ||||| |||||  | || | |||||||| || | ||  |||||||||||||||| ||||    
T  43177057 agtaggggtgggcatggttcggttaaccatcaaaaccgaaccgaactgaaccaaattgataaaatggttcgggaaaactgaaccgaaccgtttaaagttt 43177156  T
Q  179 gaagctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaacc 248  Q
    | |  ||  | |||||| || |||||||| ||||||||||| |||| ||  ||||||||| |||| ||||    
T  43177157 ggaagtaatcaaactgaacctaagttatggttcggttaaccatttgcttacctattaaccgaaccaaacc 43177226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 361 - 471
Target Start/End: Original strand, 39958814 - 39958925
Alignment:
Q  361 acaacataagaaaccaaataaagaaat-ttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgt 459  Q
    |||| ||||||||| ||||||| |||  ||||| ||  |||||||| |||||| | |||||||| | |||||  ||| |||||||||||||||||| |||    
T  39958814 acaagataagaaactaaataaaaaaaaattaactttaaaaattgtgtattcatgaccttaaaagcttaaaaatatatcttttcaatacaatatttagtgt 39958913  T
Q  460 ttgtttctattt 471  Q
    || |||||||||    
T  39958914 ttatttctattt 39958925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 382 - 483
Target Start/End: Original strand, 7721578 - 7721679
Alignment:
Q  382 agaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgtttgtttctattttaagatcctt 481  Q
    |||||||||| ||| ||||||||||||| || || || | || | |||||||||| |||||||| ||| ||||||| |||  ||||||||| ||||| ||    
T  7721578 agaaatttaatcttagaaattgtgcatttatgatttttataggttaaaaacttatcttttcaatgcaacatttattttttaattctatttttagatcatt 7721677  T
Q  482 at 483  Q
    ||    
T  7721678 at 7721679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 473
Target Start/End: Original strand, 13915863 - 13915950
Alignment:
Q  386 atttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatac-aatatttattgtttgtttctatttta 473  Q
    |||||| |||| |||||||| ||| |||| |||||||||| ||||| ||||||||||||| | |||||||||| |||  ||||||||||    
T  13915863 atttaatcttgaaaattgtg-atttataaacttaaaagtttaaaaatttatattttcaatgcaaatatttattttttaattctatttta 13915950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 422
Target Start/End: Complemental strand, 33434349 - 33434309
Alignment:
Q  382 agaaatttaaccttggaaattgtgcattcataatcttaaaa 422  Q
    |||||||||| ||||||||||||||||||| ||||||||||    
T  33434349 agaaatttaatcttggaaattgtgcattcaaaatcttaaaa 33434309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 412
Target Start/End: Complemental strand, 44722636 - 44722584
Alignment:
Q  360 cacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcat 412  Q
    ||||| ||||||||| |||||||||||||||||| |  |||||||||||||||    
T  44722636 cacaaaataagaaactaaataaagaaatttaaccataaaaattgtgcattcat 44722584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 444
Target Start/End: Complemental strand, 2126263 - 2126213
Alignment:
Q  394 ttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaa 444  Q
    ||||||||||||||||||  || |||||| || ||||||||||||||||||    
T  2126263 ttggaaattgtgcattcaatattttaaaaatttaaaaacttatattttcaa 2126213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 267
Target Start/End: Original strand, 25396452 - 25396525
Alignment:
Q  199 aaagttatgcttcggttaaccgtttgtttgtctattaacca-----aaccgaaccaaaaccaaaattttgaact 267  Q
    ||||||||| |||||||||||||||  |||  |||||||||     ||||||||||||| ||||||||||||||    
T  25396452 aaagttatgattcggttaaccgtttacttgcttattaaccaaactgaaccgaaccaaaatcaaaattttgaact 25396525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 457
Target Start/End: Original strand, 39187522 - 39187578
Alignment:
Q  401 ttgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttatt 457  Q
    |||||||||||  ||||||||||||  |||| |||||||||||||| || |||||||    
T  39187522 ttgtgcattcaatatcttaaaagttgcaaaagttatattttcaatataaaatttatt 39187578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 369 - 483
Target Start/End: Complemental strand, 12570224 - 12570110
Alignment:
Q  369 agaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgtttgtttcta 468  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  12570224 agaaactaaataaagaaatttaaccttgaaaattgtgcattcataatcttaaaagttcaaaaacttatatttttaatacaatatttattgtttgtttcta 12570125  T
Q  469 ttttaagatccttat 483  Q
    |||||||||| ||||    
T  12570124 ttttaagatctttat 12570110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 360 - 474
Target Start/End: Complemental strand, 13383161 - 13383047
Alignment:
Q  360 cacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgt 459  Q
    ||||| ||||||||| ||| ||||||||||||| | | |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  13383161 cacaagataagaaactaaagaaagaaatttaacttcgaaaattgtgcattcataatcttaaaagtttaaaaacttatatttttaatacaatatttattgt 13383062  T
Q  460 ttgtttctattttaa 474  Q
    || ||||||||||||    
T  13383061 ttatttctattttaa 13383047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 81 - 267
Target Start/End: Complemental strand, 27842725 - 27842539
Alignment:
Q  81 taggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttga 180  Q
    ||||||||||||||||| ||||||||  |  ||||||| |||||||||||| | | ||||||||||| || | |||||||||||||||||| |||| ||     
T  27842725 taggggtgggcatggttcggttaacctaaaaaatcgaaccgaaccgaaccgaaattttgaaatggttcgggaaaatcgaaccgaaccgtttcaggtatgg 27842626  T
Q  181 agctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaaccaaaaccaaaattttgaact 267  Q
    ||||| ||||||||| ||||||||||| |||||||||||||||  ||   ||| |||  ||||||||||||||||| ||||||||||    
T  27842625 agctaaccgaactgaaccaaagttatggttcggttaaccgttttcttacgtatgaactgaaccgaaccaaaaccaatattttgaact 27842539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 81 - 266
Target Start/End: Original strand, 34393586 - 34393771
Alignment:
Q  81 taggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttga 180  Q
    ||||||||||||||||| ||||||||  |  ||||||| |||||||||||| | | ||||||||||| || | |||||||||||||||||| |||| ||     
T  34393586 taggggtgggcatggttcggttaacctaaaaaatcgaaccgaaccgaaccgaaattttgaaatggttcgggaaaatcgaaccgaaccgtttcaggtatgg 34393685  T
Q  181 agctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaaccaaaaccaaaattttgaac 266  Q
    ||||| ||||||||| ||||||||||| |||||||||||||||  ||   ||| |||  ||||||||||||| ||| |||||||||    
T  34393686 agctaaccgaactgaaccaaagttatggttcggttaaccgttttcttacgtatgaactgaaccgaaccaaaatcaatattttgaac 34393771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 358 - 483
Target Start/End: Original strand, 50075560 - 50075685
Alignment:
Q  358 gacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttatt 457  Q
    ||||||| ||||||||  ||||||||||||||||||||  |||||||||||||||||||||||||||| ||||| |||| |||||||  |||||||||||    
T  50075560 gacacaagataagaaattaaataaagaaatttaaccttaaaaattgtgcattcataatcttaaaagtttaaaaagttatcttttcaacgcaatatttatt 50075659  T
Q  458 gtttgtttctattttaagatccttat 483  Q
    |||| |||||||||||| ||| ||||    
T  50075660 gtttatttctattttaaaatctttat 50075685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 332 - 484
Target Start/End: Original strand, 36438333 - 36438485
Alignment:
Q  332 agggtcttgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaa 431  Q
    ||||||||||||||||||||||| | | ||||| ||||||||| ||||  ||||| |||| |||||||||| ||||||||||| |||||||  |  ||||    
T  36438333 agggtcttgttaacttgtgccctaagggcacaagataagaaactaaatgtagaaacttaatcttggaaattttgcattcataaccttaaaaacttcaaaa 36438432  T
Q  432 cttatattttcaatacaatatttattgtttgtttctattttaagatccttatt 484  Q
    |||||||||||||| ||||||||||| ||   |||||||||||||||||||||    
T  36438433 cttatattttcaatgcaatatttatttttaaattctattttaagatccttatt 36438485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 332 - 483
Target Start/End: Original strand, 21008144 - 21008295
Alignment:
Q  332 agggtcttgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaa 431  Q
    ||||||||||||||||||||||||| | ||||| ||||||||| |||||||||| |||||| ||| |||| |||||||||  | |||||||  | |||||    
T  21008144 agggtcttgttaacttgtgcccttagggcacaagataagaaactaaataaagaattttaactttgaaaatcgtgcattcaataccttaaaaacttaaaaa 21008243  T
Q  432 cttatattttcaatacaatatttattgtttgtttctattttaagatccttat 483  Q
     |||| |||||||||||||||||||| |||  |||||||||||||| |||||    
T  21008244 gttatcttttcaatacaatatttattatttaattctattttaagattcttat 21008295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 332 - 483
Target Start/End: Complemental strand, 47950146 - 47949995
Alignment:
Q  332 agggtcttgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaa 431  Q
    ||||||| | ||||||||||||| | | ||||| ||||||||| ||||  |||||||||| |||| ||||||||||||||||| |||||||| | |||||    
T  47950146 agggtctagctaacttgtgccctaagggcacaagataagaaactaaatgtagaaatttaatcttgcaaattgtgcattcataaccttaaaagcttaaaaa 47950047  T
Q  432 cttatattttcaatacaatatttattgtttgtttctattttaagatccttat 483  Q
    ||| | |||||||| ||||||||||| |||  ||||||||||||||||||||    
T  47950046 cttgtcttttcaatgcaatatttattttttaattctattttaagatccttat 47949995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 333 - 483
Target Start/End: Complemental strand, 14149625 - 14149476
Alignment:
Q  333 gggtcttgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaac 432  Q
    |||||||||||||||||||||||| | ||||| ||||||||| ||||||||||||||||| ||| |||||||| |||||| | |||||||| |  ||||     
T  14149625 gggtcttgttaacttgtgcccttagggcacaagataagaaactaaataaagaaatttaactttgaaaattgtgtattcatgaccttaaaagct-taaaat 14149527  T
Q  433 ttatattttcaatacaatatttattgtttgtttctattttaagatccttat 483  Q
    || | |||||||||||||| |||||||||  |||||||||||||| |||||    
T  14149526 ttttcttttcaatacaataattattgtttacttctattttaagattcttat 14149476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 120 - 266
Target Start/End: Original strand, 24186652 - 24186798
Alignment:
Q  120 cgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaacc 219  Q
    |||||||||||| | | ||||||||||| || | || ||||||||||||||| |||| || ||||| ||||||||| ||||||||||| |||||||||||    
T  24186652 cgaaccgaaccgaaattttgaaatggttcgggaaaaccgaaccgaaccgtttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaacc 24186751  T
Q  220 gtttgtttgtctattaaccaaaccgaaccaaaaccaaaattttgaac 266  Q
    ||||  ||  |||| |||  ||||||||||||||||| |||||||||    
T  24186752 gttttcttacctatgaactgaaccgaaccaaaaccaatattttgaac 24186798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 137 - 266
Target Start/End: Complemental strand, 34387666 - 34387537
Alignment:
Q  137 ttgaaatggtttggaataatcgaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaa 236  Q
    |||||||||||||| | || ||||||||||||||| |||| || ||||| ||||||||| ||||||||||| |||||||||||||||  ||  |||| ||    
T  34387666 ttgaaatggtttgggaaaaccgaaccgaaccgtttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaaccgttttcttacctatgaa 34387567  T
Q  237 ccaaaccgaaccaaaaccaaaattttgaac 266  Q
    |  ||||||||||||||||| |||||||||    
T  34387566 ctgaaccgaaccaaaaccaatattttgaac 34387537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 81 - 265
Target Start/End: Original strand, 32000538 - 32000727
Alignment:
Q  81 taggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttga 180  Q
    ||||||||||||||||| |||||||||||   || |||  |||| |||||| | |||||||||||||| ||| ||  ||||||||||||||||| ||||     
T  32000538 taggggtgggcatggttcggttaaccataaatattgaactgaactgaaccgaattgttgaaatggtttagaaaaactgaaccgaaccgtttaagatttgg 32000637  T
Q  181 agctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctatt-----aaccaaaccgaaccaaaaccaaaattttgaa 265  Q
    | ||||| |||||||  |||||||||| |||| |||| | |||||||  |||||     |||||||||||||||||| ||| ||||||||    
T  32000638 aactatctgaactgaatcaaagttatggttcgattaatcatttgtttacctattaaccgaaccaaaccgaaccaaaatcaatattttgaa 32000727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 366 - 483
Target Start/End: Complemental strand, 24439245 - 24439128
Alignment:
Q  366 ataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgtttgttt 465  Q
    ||||||||| ||||  | ||||||||  ||| |||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||| |||  ||    
T  24439245 ataagaaactaaatgtaaaaatttaattttgaaaattgtgcattcataatcttaaaagtttaaaaacttatttttttaatacaatatttattttttaatt 24439146  T
Q  466 ctattttaagatccttat 483  Q
    |||| || |||| |||||    
T  24439145 ctatatttagattcttat 24439128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 383 - 483
Target Start/End: Original strand, 11908539 - 11908639
Alignment:
Q  383 gaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgtttgtttctattttaagatcctta 482  Q
    ||||||||| ||||||||||||||||||||||| ||||||||| |||||||||| |||||||| ||| ||||||| |||  |||||| || ||||| |||    
T  11908539 gaaatttaatcttggaaattgtgcattcataattttaaaagtttaaaaacttatcttttcaatgcaacatttattttttaattctatatttagatcttta 11908638  T
Q  483 t 483  Q
    |    
T  11908639 t 11908639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 159 - 266
Target Start/End: Complemental strand, 34588966 - 34588859
Alignment:
Q  159 aaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaaccaaaaccaaaa 258  Q
    ||||||||||||| |||| || | ||| ||||||||| ||||||||||| |||||||||||||||  ||  |||| |||| ||||||||||||||||| |    
T  34588966 aaccgaaccgtttcaggtatgcaactaaccgaactgaaccaaagttatggttcggttaaccgttttcttacctatgaaccgaaccgaaccaaaaccaata 34588867  T
Q  259 ttttgaac 266  Q
    ||||||||    
T  34588866 ttttgaac 34588859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 332 - 477
Target Start/End: Complemental strand, 10101386 - 10101246
Alignment:
Q  332 agggtcttgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaa 431  Q
    ||||||||| ||||||||| ||||| |||| || ||||||||| ||||   |||||||||||||| ||||||||||||||||     | ||  | |||||    
T  10101386 agggtcttgctaacttgtgtccttaagacataagataagaaactaaatgttgaaatttaaccttgaaaattgtgcattcata-----acaatcttaaaaa 10101292  T
Q  432 cttatattttcaatacaatatttattgtttgtttctattttaagat 477  Q
    ||||| |||| ||||||||||||||| |||  ||||||||||||||    
T  10101291 cttatctttttaatacaatatttattatttaattctattttaagat 10101246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 398 - 478
Target Start/End: Original strand, 47445989 - 47446069
Alignment:
Q  398 aaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgtttgtttctattttaagatc 478  Q
    |||||||||||| ||||||||||||||| ||||| |||| |||||||||||||||||||| |||  ||||||||| |||||    
T  47445989 aaattgtgcatttataatcttaaaagttaaaaaatttatcttttcaatacaatatttattatttaattctatttttagatc 47446069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 122 - 248
Target Start/End: Original strand, 790091 - 790217
Alignment:
Q  122 aaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaaccgt 221  Q
    |||||||||| | | ||||||||||| |  | |||||||||||||||||| |||| || || || ||||||||| ||||||||||| |||||||||||||    
T  790091 aaccgaaccgaaattttgaaatggttcgagaaaatcgaaccgaaccgtttcaggtatggagttaaccgaactgaaccaaagttatggttcggttaaccgt 790190  T
Q  222 ttgtttgtctattaaccaaaccgaacc 248  Q
    ||  ||  |||| |||| |||||||||    
T  790191 tttcttacctatgaaccgaaccgaacc 790217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 122 - 248
Target Start/End: Complemental strand, 15649244 - 15649118
Alignment:
Q  122 aaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaaccgt 221  Q
    |||||||||| | | ||||||||||| || | |||||||||||||| ||| | ||||| ||||| |||| |||| ||||||||||| || |||||||| |    
T  15649244 aaccgaaccgaaattttgaaatggttcgggaaaatcgaaccgaaccattttaagtttggagctaaccgagctgaaccaaagttatggtttggttaaccat 15649145  T
Q  222 ttgtttgtctattaaccaaaccgaacc 248  Q
    ||| ||  |||||||||| ||||||||    
T  15649144 ttgcttacctattaaccataccgaacc 15649118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 81 - 223
Target Start/End: Complemental strand, 17305228 - 17305087
Alignment:
Q  81 taggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttga 180  Q
    ||||||||||||||||| ||||||||  |  || |||| |||||||||||| | | || |||||||| |||| || ||||||||||||||| | || ||     
T  17305228 taggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaccgaaattttaaaatggttcggaa-aaccgaaccgaaccgtttcatgtatgc 17305130  T
Q  181 agctatccgaactgatccaaagttatgcttcggttaaccgttt 223  Q
    | ||| |||||| || ||||||||||| |||||||||||||||    
T  17305129 aactaaccgaaccgaaccaaagttatggttcggttaaccgttt 17305087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 335 - 411
Target Start/End: Original strand, 47449137 - 47449213
Alignment:
Q  335 gtcttgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattca 411  Q
    |||||||||||||||||||| | | || || | ||||||| ||||||||||||||||| ||||||||||||||||||    
T  47449137 gtcttgttaacttgtgccctaagggcataagaaaagaaactaaataaagaaatttaactttggaaattgtgcattca 47449213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 336 - 483
Target Start/End: Complemental strand, 35652635 - 35652488
Alignment:
Q  336 tcttgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaactta 435  Q
    ||||||||||| ||| ||| | ||||||| ||||||||| ||||  ||||| ||||| ||| |||||||||||||  || ||||| |  | |||||||||    
T  35652635 tcttgttaactagtgtcctaaggacacaagataagaaactaaatgtagaaacttaactttgaaaattgtgcattctaaaccttaacaacttaaaaactta 35652536  T
Q  436 tattttcaatacaatatttattgtttgtttctattttaagatccttat 483  Q
    | |||||||| ||||||||||| |||  ||  ||||||||||| ||||    
T  35652535 tcttttcaatgcaatatttattatttaatttaattttaagatctttat 35652488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 81 - 248
Target Start/End: Complemental strand, 51236478 - 51236312
Alignment:
Q  81 taggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttga 180  Q
    ||||||||||||||||||||||||||  |  || |||| |||||| ||||  | | |||||||||||  ||| || ||||||||||||||| |||| ||     
T  51236478 taggggtgggcatggtttggttaacctaaaaaaccgaaccgaaccaaaccaaaattttgaaatggttcagaa-aaccgaaccgaaccgtttcaggtatgg 51236380  T
Q  181 agctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaacc 248  Q
    | ||| || |||||| ||||||||||| |||||||||| ||||  ||  |||| |||| |||||||||    
T  51236379 acctaaccaaactgaaccaaagttatggttcggttaactgttttcttacctatgaaccgaaccgaacc 51236312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 81 - 179
Target Start/End: Original strand, 33376482 - 33376580
Alignment:
Q  81 taggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttg 179  Q
    |||||||||| |||||| |||||||||||||||||||| |||||||||    |||||||||||||||  |||||| ||||  |||| ||||||| ||||    
T  33376482 taggggtggggatggttcggttaaccatattaatcgaaccgaaccgaattaaagtgttgaaatggttcagaataaccgaattgaactgtttaagttttg 33376580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 398 - 483
Target Start/End: Original strand, 47176746 - 47176832
Alignment:
Q  398 aaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgttt-gtttctattttaagatccttat 483  Q
    ||||||||||||||||||||| |||||  ||||||| ||||||||||| ||||||||||| |||   ||||||||| ||||||||||    
T  47176746 aaattgtgcattcataatctttaaagtataaaaactcatattttcaatgcaatatttattttttaaattctatttttagatccttat 47176832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 411
Target Start/End: Original strand, 1607323 - 1607396
Alignment:
Q  338 ttgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattca 411  Q
    ||||||||||||||||||| | ||||| ||||||||| ||||  ||||||||||| ||| ||||||||||||||    
T  1607323 ttgttaacttgtgcccttagggcacaatataagaaactaaatgtagaaatttaactttgaaaattgtgcattca 1607396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 399 - 483
Target Start/End: Complemental strand, 46288884 - 46288800
Alignment:
Q  399 aattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgtttgtttctattttaagatccttat 483  Q
    |||||| ||||||||| |||||||  | |||||||||| || |||||| ||||||||||||||  ||||||||| ||||||||||    
T  46288884 aattgtacattcataaccttaaaaacttaaaaacttattttatcaatataatatttattgtttaattctattttgagatccttat 46288800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 483
Target Start/End: Complemental strand, 10987327 - 10987204
Alignment:
Q  360 cacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgt 459  Q
    ||||| ||||||||| ||||  ||||| ||||||||| ||||||||||||   ||  ||||||  | |||||||||| |||||||| ||||||||||| |    
T  10987327 cacaagataagaaactaaatgtagaaacttaaccttgaaaattgtgcattttaaactttaaaatcttaaaaacttatcttttcaatgcaatatttattat 10987228  T
Q  460 ttgtttctattttaagatccttat 483  Q
    | |  |||||||||||||| ||||    
T  10987227 tggaatctattttaagatctttat 10987204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 332 - 457
Target Start/End: Complemental strand, 18033796 - 18033670
Alignment:
Q  332 agggtcttgttaacttgtgcccttatgacacaacataagaaacc-aaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaa 430  Q
    ||||||||| |||||||||| || | | ||||| |||||||| | ||||| |||||||| | |||||| |||||||||| ||||||||||||  | ||||    
T  18033796 agggtcttgctaacttgtgctctaagggcacaatataagaaaactaaatatagaaatttgatcttggatattgtgcatttataatcttaaaaacttaaaa 18033697  T
Q  431 acttatattttcaatacaatatttatt 457  Q
    | |||| |||| ||| ||| |||||||    
T  18033696 atttatctttttaatgcaacatttatt 18033670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 382 - 483
Target Start/End: Original strand, 23452924 - 23453023
Alignment:
Q  382 agaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgtttgtttctattttaagatcctt 481  Q
    ||||||||||| ||| ||||||  |||||||||  ||||||  | ||||||  ||||||||||||||||||||||| |||  ||||||||||||||| ||    
T  23452924 agaaatttaactttgaaaattgcacattcataacattaaaatcttaaaaac--atattttcaatacaatatttattattttattctattttaagatcttt 23453021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 120 - 246
Target Start/End: Complemental strand, 32132145 - 32132019
Alignment:
Q  120 cgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaacc 219  Q
    |||||||||||  | | ||||| ||||| || | |||||||||||||||||| | ||||| | ||| ||||| ||| ||||||||||| || ||||||||    
T  32132145 cgaaccgaaccaaaattttgaagtggttcgggaaaatcgaaccgaaccgtttcaagtttggaactaaccgaattgagccaaagttatggtttggttaacc 32132046  T
Q  220 gtttgtttgtctattaaccaaaccgaa 246  Q
     |||| ||  |||||||||| ||||||    
T  32132045 atttgcttacctattaaccataccgaa 32132019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 398 - 477
Target Start/End: Original strand, 10657977 - 10658056
Alignment:
Q  398 aaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgtttgtttctattttaagat 477  Q
    ||||||||||||||| |||||||||||| ||||||| ||||||| |||  || ||||||| |||  ||||||||| ||||    
T  10657977 aaattgtgcattcatgatcttaaaagtttaaaaactcatatttttaatgaaacatttattttttaattctatttttagat 10658056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 449
Target Start/End: Original strand, 34462725 - 34462835
Alignment:
Q  339 tgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatat 438  Q
    |||||||||||||||||| |||||||  | ||||  |||||  |||||||||   ||| ||||||||||||||   |||| |||| |  |||||||||||    
T  34462725 tgttaacttgtgcccttaagacacaagtttagaagtcaaatgtagaaatttatttttgaaaattgtgcattcaatgtcttgaaaggttgaaaacttatat 34462824  T
Q  439 tttcaatacaa 449  Q
    |||||||||||    
T  34462825 tttcaatacaa 34462835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 422
Target Start/End: Complemental strand, 44487765 - 44487703
Alignment:
Q  360 cacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaa 422  Q
    ||||| ||||||||| ||||   ||||||||| ||| ||||||||||||||||||||||||||    
T  44487765 cacaagataagaaactaaatgtcgaaatttaatcttagaaattgtgcattcataatcttaaaa 44487703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 332 - 421
Target Start/End: Original strand, 2355373 - 2355462
Alignment:
Q  332 agggtcttgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaa 421  Q
    |||||||||||||||||| || |   ||||||| |||| |||| ||||| | |||||||| | || ||||||||||||| ||||||||||    
T  2355373 agggtcttgttaacttgtaccatacagacacaagataaaaaactaaatatataaatttaatcatgaaaattgtgcattcgtaatcttaaa 2355462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 457
Target Start/End: Original strand, 30321923 - 30322042
Alignment:
Q  338 ttgttaacttgtgcccttatga-cacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttat 436  Q
    ||||||||||||||| ||| || ||||| ||||||||| ||||  ||||| |||| |||  ||||||||||||   || |||||||  | ||||||||||    
T  30321923 ttgttaacttgtgcc-ttaagatcacaagataagaaactaaatgtagaaacttaatcttaaaaattgtgcattttaaaccttaaaatcttaaaaacttat 30322021  T
Q  437 attttcaatacaatatttatt 457  Q
     |||||||| |||||||||||    
T  30322022 cttttcaatgcaatatttatt 30322042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 128
Target Start/End: Original strand, 48313899 - 48313943
Alignment:
Q  84 gggtgggcatggtttggttaaccatattaatcgaatcgaaccgaa 128  Q
    |||||||||||||| ||||||||||||||| |||| |||||||||    
T  48313899 gggtgggcatggttcggttaaccatattaaccgaaccgaaccgaa 48313943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 441
Target Start/End: Complemental strand, 5029708 - 5029665
Alignment:
Q  398 aaattgtgcattcataatcttaaaagttcaaaaacttatatttt 441  Q
    |||||||||||| ||||| ||||||||| |||||||||||||||    
T  5029708 aaattgtgcattgataattttaaaagtttaaaaacttatatttt 5029665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 8065386 - 8065456
Alignment:
Q  197 ccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaaccaaaaccaaaattttgaact 267  Q
    ||||||||||| |||||||||||||||  ||   ||| |||| ||||||||||||| ||| ||||||||||    
T  8065386 ccaaagttatggttcggttaaccgttttcttacttatgaaccgaaccgaaccaaaatcaatattttgaact 8065456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 241
Target Start/End: Complemental strand, 24918972 - 24918871
Alignment:
Q  140 aaatggtttggaataatcgaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaacca 239  Q
    |||||||| |||| ||| |||| ||||||||||| ||||| |  || || ||||||  |||||||||| || |||||||| |||| ||  ||||||||||    
T  24918972 aaatggttcggaaaaattgaactgaaccgtttaaagtttggaattaaccaaactgaatcaaagttatggtttggttaaccatttgcttacctattaacca 24918873  T
Q  240 aa 241  Q
    ||    
T  24918872 aa 24918871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 457
Target Start/End: Complemental strand, 38081688 - 38081624
Alignment:
Q  393 cttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttatt 457  Q
    |||||||||||||||||||   |||||||||||  |||| |||| ||||||||| || |||||||    
T  38081688 cttggaaattgtgcattcaatgtcttaaaagtttcaaaagttatcttttcaatataaaatttatt 38081624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 98; Significance: 5e-48; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 81 - 266
Target Start/End: Complemental strand, 54236 - 54051
Alignment:
Q  81 taggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttga 180  Q
    ||||||||||||||||||||||||||||||||| |||| ||||  |||| | ||| |||||||||||  |||||| | ||||||||||| |||||||||     
T  54236 taggggtgggcatggtttggttaaccatattaaccgaaccgaattgaactgaagtattgaaatggttcagaataaccaaaccgaaccgtctaaggtttgg 54137  T
Q  181 agctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaaccaaaaccaaaattttgaac 266  Q
    | ||| ||||||||| ||||||||||| |||||||||||||||| ||  ||||||||| ||||||||||||| |||||||||||||    
T  54136 aactaaccgaactgaaccaaagttatggttcggttaaccgtttgcttacctattaaccgaaccgaaccaaaatcaaaattttgaac 54051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 3e-46; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 81 - 271
Target Start/End: Complemental strand, 1801074 - 1800884
Alignment:
Q  81 taggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttga 180  Q
    ||||||||| ||||||| ||||||||||||||| |||||||||| |||||| | |||| ||||||||  ||||||||||| ||||| ||||||||||||     
T  1801074 taggggtggacatggttcggttaaccatattaaccgaatcgaactgaaccgaaatgttaaaatggttcagaataatcgaatcgaactgtttaaggtttgg 1800975  T
Q  181 agctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaaccaaaaccaaaattttgaactaaaa 271  Q
    | |||  |||||||| ||||||||||  ||| ||||||||||| |||| ||||||||| ||||||| ||||||||||||||||||| ||||    
T  1800974 aactaatcgaactgaaccaaagttatcgttcagttaaccgtttatttgcctattaaccgaaccgaatcaaaaccaaaattttgaaccaaaa 1800884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 81 - 271
Target Start/End: Original strand, 23111273 - 23111458
Alignment:
Q  81 taggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttga 180  Q
    ||||||||||||||||| ||||||||||| |     || | |||||||||| ||||||||||||||| ||||||| ||||||||||||||| | |||||     
T  23111273 taggggtgggcatggttcggttaaccataat-----aaccaaaccgaaccgaagtgttgaaatggttcggaataaccgaaccgaaccgtttgatgtttgg 23111367  T
Q  181 agctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaaccaaaaccaaaattttgaactaaaa 271  Q
    | ||| |||||||||  |||||||||| ||||||||| | |||| ||||||||||||| ||||||||||||||||||||||||||| ||||    
T  23111368 aactaaccgaactgaatcaaagttatggttcggttaatcatttgcttgtctattaaccgaaccgaaccaaaaccaaaattttgaaccaaaa 23111458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 360 - 478
Target Start/End: Original strand, 32604488 - 32604606
Alignment:
Q  360 cacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgt 459  Q
    ||||| ||||||||| ||||||||||||||||| ||| ||||||||||||||||||| ||| || | ||||| |||||||||||||||||||||||||||    
T  32604488 cacaagataagaaactaaataaagaaatttaacattgaaaattgtgcattcataatcctaacagcttaaaaatttatattttcaatacaatatttattgt 32604587  T
Q  460 ttgtttctattttaagatc 478  Q
    || ||||||||||||||||    
T  32604588 ttatttctattttaagatc 32604606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 81 - 253
Target Start/End: Complemental strand, 12356504 - 12356337
Alignment:
Q  81 taggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttga 180  Q
    ||||||||||||||||| |||||||||||||     || ||||||||| || ||||||||||||||| ||| ||| |||||||||||||||||||||||     
T  12356504 taggggtgggcatggttcggttaaccatatt-----aaacgaaccgaatcgaagtgttgaaatggttcggagtaaccgaaccgaaccgtttaaggtttgg 12356410  T
Q  181 agctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaaccaaaac 253  Q
    |  || ||||| ||| ||||||||||| || ||||||| ||||| ||| ||||| ||| ||||||||||||||    
T  12356409 aaataaccgaattgaaccaaagttatggtttggttaacagtttgcttggctattgaccgaaccgaaccaaaac 12356337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 137 - 266
Target Start/End: Complemental strand, 29092884 - 29092755
Alignment:
Q  137 ttgaaatggtttggaataatcgaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaa 236  Q
    ||||||| ||| || | |||||||||||||||||| |||| || ||||| ||||||||| ||||||||||| ||||| |||||||||  || ||||| ||    
T  29092884 ttgaaatcgttcgggaaaatcgaaccgaaccgtttcaggtatggagctaaccgaactgaaccaaagttatggttcggataaccgttttcttatctatgaa 29092785  T
Q  237 ccaaaccgaaccaaaaccaaaattttgaac 266  Q
    |||||||||||||||||||| |||||||||    
T  29092784 ccaaaccgaaccaaaaccaatattttgaac 29092755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 82 - 266
Target Start/End: Complemental strand, 17154460 - 17154276
Alignment:
Q  82 aggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttgaa 181  Q
    |||||||||||||||| |||||||   |  || | || |||||||||||| | | |||||||||||  | | || |||||| |||||||| |||| || |    
T  17154460 aggggtgggcatggttcggttaacttaaaaaaccaaaccgaaccgaaccgaaattttgaaatggttcaggaaaaccgaaccaaaccgtttcaggtatgga 17154361  T
Q  182 gctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaaccaaaaccaaaattttgaac 266  Q
    | || ||||||||| ||||||||||| |||||||||||||||  ||  |||| |||| ||||||||||||||||| |||||||||    
T  17154360 gttaaccgaactgaaccaaagttatggttcggttaaccgttttcttacctatgaaccgaaccgaaccaaaaccaatattttgaac 17154276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 80 - 251
Target Start/End: Complemental strand, 8636311 - 8636150
Alignment:
Q  80 gtaggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttg 179  Q
    ||||| |||||||||||| |||||||||||||||  ||| | |||||||     ||||||||||||||  ||||||||||||||     |||||||||||    
T  8636311 gtaggagtgggcatggttcggttaaccatattaacagaaccaaaccgaa-----gtgttgaaatggttctgaataatcgaaccg-----tttaaggtttg 8636222  T
Q  180 aagctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaaccaaa 251  Q
     | ||| |||| |||| |||||||||||  ||||||||||||||| ||  ||||||||| ||| ||||||||    
T  8636221 gaactaaccgagctgaaccaaagttatggctcggttaaccgtttgcttacctattaaccgaactgaaccaaa 8636150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 159 - 266
Target Start/End: Original strand, 33702599 - 33702706
Alignment:
Q  159 aaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaaccaaaaccaaaa 258  Q
    ||||||||||||| |||| || ||||| ||||||||| ||||||||||| ||||||||||| |||  ||  |||  |||| ||||||||||||||||| |    
T  33702599 aaccgaaccgtttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaaccattttcttacctaagaaccgaaccgaaccaaaaccaata 33702698  T
Q  259 ttttgaac 266  Q
    ||||||||    
T  33702699 ttttgaac 33702706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 80 - 252
Target Start/End: Complemental strand, 29398109 - 29397938
Alignment:
Q  80 gtaggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttg 179  Q
    |||||||||||||||||| |||||| |||   ||  ||| |||||||||||  | || | |||||||| |||| ||| |||| |||| |||||| |||||    
T  29398109 gtaggggtgggcatggttcggttaatcattaaaactgaaccgaaccgaaccaaattgcttaaatggttcggaaaaattgaactgaactgtttaaagtttg 29398010  T
Q  180 aagctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaaccaaaa 252  Q
     |  || || |||||| | | | ||||| ||||||||||| |||||||  |||||||||||||||||||||||    
T  29398009 gaagtaaccaaactgaacgaca-ttatggttcggttaaccatttgtttacctattaaccaaaccgaaccaaaa 29397938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 360 - 484
Target Start/End: Complemental strand, 1288274 - 1288158
Alignment:
Q  360 cacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgt 459  Q
    |||||||||||||   ||||||| ||||||| | ||| |||||||||||| |||| |||||||        ||||||||||||||||||||||||||  |    
T  1288274 cacaacataagaatttaaataaaaaaatttagcattgaaaattgtgcatttataaccttaaaa--------acttatattttcaatacaatatttataat 1288183  T
Q  460 ttgtttctattttaagatccttatt 484  Q
    ||  ||||||||||| ||| |||||    
T  1288182 ttaattctattttaaaatctttatt 1288158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 157 - 248
Target Start/End: Original strand, 27596511 - 27596602
Alignment:
Q  157 cgaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaacc 248  Q
    ||||||||||||||| | ||| | ||||| ||||||||| ||||| ||||| || |||||||| |||| ||  |||||||||| ||||||||    
T  27596511 cgaaccgaaccgtttcatgttggcagctaaccgaactgaaccaaaattatggtttggttaaccatttgcttacctattaaccataccgaacc 27596602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 414
Target Start/End: Original strand, 33513908 - 33513964
Alignment:
Q  358 gacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataa 414  Q
    ||||||| ||||||||| ||||  ||||||||||||||  |||||||||||||||||    
T  33513908 gacacaagataagaaactaaatgtagaaatttaaccttaaaaattgtgcattcataa 33513964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 411
Target Start/End: Original strand, 2588769 - 2588841
Alignment:
Q  339 tgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattca 411  Q
    |||||||||||||||||| |||||||  | | |||||||||  ||||| ||||  ||| ||||||||||||||    
T  2588769 tgttaacttgtgcccttaagacacaagtttataaaccaaatgtagaaacttaattttgaaaattgtgcattca 2588841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 9e-31; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 342 - 483
Target Start/End: Original strand, 12517064 - 12517201
Alignment:
Q  342 taacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatatttt 441  Q
    ||||||||||||| | | ||||| ||||||||| |||||||    ||||||||   ||||||| |||||||||||||||||| | ||||| |||||||||    
T  12517064 taacttgtgccctaagggcacaagataagaaactaaataaa----tttaacctaacaaattgttcattcataatcttaaaagcttaaaaatttatatttt 12517159  T
Q  442 caatacaatatttattgtttgtttctattttaagatccttat 483  Q
    ||||| |||||||||||||| |||||||||||||||||||||    
T  12517160 caataaaatatttattgtttatttctattttaagatccttat 12517201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 86 - 238
Target Start/End: Complemental strand, 33062193 - 33062041
Alignment:
Q  86 gtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttgaagcta 185  Q
    |||| ||||||| ||||||||||||||| ||||  ||||||||||  ||| |||||||| || ||||||| ||||| |||||||||||| |||||| |||    
T  33062193 gtggacatggttcggttaaccatattaaccgaactgaaccgaaccaaagtattgaaatgtttcggaataaccgaactgaaccgtttaagatttgaaacta 33062094  T
Q  186 tccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaacc 238  Q
     ||||||||| ||||| ||||| |||||||||| ||||| ||| |||||||||    
T  33062093 accgaactgaaccaaaattatggttcggttaactgtttgcttgcctattaacc 33062041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 338 - 446
Target Start/End: Original strand, 18393244 - 18393352
Alignment:
Q  338 ttgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttata 437  Q
    ||||||||||||| ||| | ||||||| || | |||| |||||||||||||||| ||||||||||||||||| |||| ||||||| || ||||||||||     
T  18393244 ttgttaacttgtgtcctaaggacacaagattataaactaaataaagaaatttaatcttggaaattgtgcatttataaccttaaaaatttaaaaacttatc 18393343  T
Q  438 ttttcaata 446  Q
    |||||||||    
T  18393344 ttttcaata 18393352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 336 - 483
Target Start/End: Complemental strand, 35470228 - 35470083
Alignment:
Q  336 tcttgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaactta 435  Q
    ||||||||||||||||||| | | ||  | ||||||||  ||||||||||||||||||||| ||||||| ||||||||  | |||||| | || || |||    
T  35470228 tcttgttaacttgtgccctaagggca--agataagaaattaaataaagaaatttaaccttgaaaattgttcattcatacccgtaaaagcttaataattta 35470131  T
Q  436 tattttcaatacaatatttattgtttgtttctattttaagatccttat 483  Q
    | |||||||||||||| |||||||||  |||||||||||||| |||||    
T  35470130 tcttttcaatacaatacttattgtttaattctattttaagattcttat 35470083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 366 - 474
Target Start/End: Original strand, 41174126 - 41174234
Alignment:
Q  366 ataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgtttgttt 465  Q
    ||||||||| ||||| | ||||||||||||| ||||||| ||||||||| |||||||  | |||||||||| |||||||||||||||||||| |||  ||    
T  41174126 ataagaaactaaatataaaaatttaaccttgaaaattgtacattcataaacttaaaatcttaaaaacttattttttcaatacaatatttattatttaatt 41174225  T
Q  466 ctattttaa 474  Q
    |||||||||    
T  41174226 ctattttaa 41174234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 115 - 266
Target Start/End: Original strand, 3523150 - 3523301
Alignment:
Q  115 cgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggt 214  Q
    |||| |||| ||||||| | | ||||||||||| || | ||||||||| |||||||| |||| || ||||| ||||||||| ||||||||||| ||||||    
T  3523150 cgaaccgaatcgaaccgaaattttgaaatggttcgggaaaatcgaaccaaaccgtttcaggtatggagctaaccgaactgaaccaaagttatggttcggt 3523249  T
Q  215 taaccgtttgtttgtctattaaccaaaccgaaccaaaaccaaaattttgaac 266  Q
    |||||||||  ||  |||| |||  |||||||||| |||||| |||||||||    
T  3523250 taaccgttttcttacctatgaactgaaccgaaccataaccaatattttgaac 3523301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 334 - 483
Target Start/End: Original strand, 35563017 - 35563173
Alignment:
Q  334 ggtcttgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagtt-------c 426  Q
    ||||||||||||||||||||| | ||||||| ||||||||| ||||  ||||| ||||||||||||||| |||||||  || |||||||  |            
T  35563017 ggtcttgttaacttgtgccctaaggacacaagataagaaactaaatgtagaaacttaaccttggaaattatgcattctaaaccttaaaatcttaaaaaaa 35563116  T
Q  427 aaaaacttatattttcaatacaatatttattgtttgtttctattttaagatccttat 483  Q
    |||||||||||||||||||  |||||||||| |||  ||||||||||||||| ||||    
T  35563117 aaaaacttatattttcaatgtaatatttattatttaattctattttaagatctttat 35563173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 31069137 - 31069238
Alignment:
Q  122 aaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaaccgt 221  Q
    |||||||||| | | ||||||||||| |||| |||||||| ||||| ||| |||| || ||||| ||||||||| ||||||||||| |||||||||||||    
T  31069137 aaccgaaccgaaattttgaaatggttcggaaaaatcgaactgaaccatttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaaccgt 31069236  T
Q  222 tt 223  Q
    ||    
T  31069237 tt 31069238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 81 - 248
Target Start/End: Original strand, 32955763 - 32955930
Alignment:
Q  81 taggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttga 180  Q
    ||||||||||||||||| ||| ||||  |  || |||||| |||| ||||  | | ||||||||||| |||| || ||||||||||||||| ||||| |     
T  32955763 taggggtgggcatggttcggtcaacccaaaaaaccgaatcaaaccaaaccaaaattttgaaatggttcggaaaaaccgaaccgaaccgtttcaggttggg 32955862  T
Q  181 agctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaacc 248  Q
    ||||| |||||||||  |||||||||| || |||||| | |||| ||  |||||||||| ||||||||    
T  32955863 agctaaccgaactgaatcaaagttatggtttggttaatcatttgcttacctattaaccataccgaacc 32955930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 187 - 262
Target Start/End: Complemental strand, 42545776 - 42545701
Alignment:
Q  187 ccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaaccaaaaccaaaatttt 262  Q
    ||||||||| ||||||||||| |||||||||||||||| |||  |||||||| |||||||||||||||||| ||||    
T  42545776 ccgaactgaaccaaagttatggttcggttaaccgtttgcttgcatattaaccgaaccgaaccaaaaccaaattttt 42545701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 360 - 483
Target Start/End: Complemental strand, 3494619 - 3494496
Alignment:
Q  360 cacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgt 459  Q
    ||||| |||| |||| ||||| | |||||| | |||| |||||||||||||||||||||||||  | ||||| |||| |||| ||||||| ||||||| |    
T  3494619 cacaaaataaaaaactaaatataaaaatttgatcttgaaaattgtgcattcataatcttaaaaacttaaaaatttatctttttaatacaacatttatttt 3494520  T
Q  460 ttgtttctattttaagatccttat 483  Q
    ||  ||| ||||| ||||||||||    
T  3494519 ttaattccatttttagatccttat 3494496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 402 - 461
Target Start/End: Complemental strand, 28993953 - 28993894
Alignment:
Q  402 tgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgttt 461  Q
    ||||||||||||| || ||||||| |||||||||||||| ||||||||||||||||||||    
T  28993953 tgtgcattcataacctgaaaagtttaaaaacttatatttacaatacaatatttattgttt 28993894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 382 - 457
Target Start/End: Complemental strand, 42207181 - 42207106
Alignment:
Q  382 agaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttatt 457  Q
    |||||||||| |||| |||||||||||||||||| ||||||  |||||| |||||||||||||| ||| |||||||    
T  42207181 agaaatttaatcttgtaaattgtgcattcataattttaaaaactcaaaaccttatattttcaatgcaacatttatt 42207106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 162 - 266
Target Start/End: Complemental strand, 26818460 - 26818351
Alignment:
Q  162 cgaaccgtttaaggtttgaagctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaacca-----aaccgaaccaaaaccaa 256  Q
    |||||||||| |||| || ||||| ||||||||| ||||||||||| |||||||||||||||  || ||||  |||||     |||||||||||||||||    
T  26818460 cgaaccgtttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaaccgttttcttatctaagaaccaaatcgaaccgaaccaaaaccaa 26818361  T
Q  257 aattttgaac 266  Q
     |||||||||    
T  26818360 tattttgaac 26818351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 483
Target Start/End: Complemental strand, 17904379 - 17904323
Alignment:
Q  427 aaaaacttatattttcaatacaatatttattgtttgtttctattttaagatccttat 483  Q
    ||||| |||| ||||||||||||| ||||||||||  ||||||||||||||||||||    
T  17904379 aaaaatttatcttttcaatacaatttttattgtttaattctattttaagatccttat 17904323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 360 - 483
Target Start/End: Original strand, 5844332 - 5844455
Alignment:
Q  360 cacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgt 459  Q
    ||||| ||||||||| ||||  |||||||||| |||  |||| ||||| ||| |||||||||  ||  |||||||||||||||||| ||  ||||||| |    
T  5844332 cacaagataagaaactaaatgtagaaatttaatcttaaaaatcgtgcaatcacaatcttaaagattttaaaacttatattttcaatgcagcatttatttt 5844431  T
Q  460 ttgtttctattttaagatccttat 483  Q
    ||  ||||||||| || |||||||    
T  5844432 ttaattctatttttaggtccttat 5844455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 432
Target Start/End: Original strand, 11935969 - 11936023
Alignment:
Q  378 ataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaac 432  Q
    ||||||||||||||| ||| ||||||||||||| ||| |||||||||| ||||||    
T  11935969 ataaagaaatttaactttgaaaattgtgcattcgtaaccttaaaagtttaaaaac 11936023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 461
Target Start/End: Original strand, 4982513 - 4982580
Alignment:
Q  394 ttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgttt 461  Q
    ||||||||||||||||||  ||| |||||||| ||| | ||||| ||||||||||| ||| |||||||    
T  4982513 ttggaaattgtgcattcaacatcataaaagtttaaacatttatactttcaatacaaaattaattgttt 4982580  T

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Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 248
Target Start/End: Original strand, 8465187 - 8465238
Alignment:
Q  197 ccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaacc 248  Q
    ||||||||||| |||||||||||||||| ||  ||||||| |||||||||||    
T  8465187 ccaaagttatgattcggttaaccgtttgcttacctattaatcaaaccgaacc 8465238  T

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Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 449
Target Start/End: Original strand, 523631 - 523741
Alignment:
Q  339 tgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatat 438  Q
    |||||||||||||||||| | |||||  | |||| ||||||| | |||||||   ||| |||||||||||| |   |||| |||| | ||||| ||||||    
T  523631 tgttaacttgtgcccttaaggcacaagtttagaagccaaatataaaaatttatttttgaaaattgtgcatttaatgtcttgaaaggttaaaaatttatat 523730  T
Q  439 tttcaatacaa 449  Q
    |||||||||||    
T  523731 tttcaatacaa 523741  T

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Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 42545814 - 42545765
Alignment:
Q  81 taggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaacc 130  Q
    ||||||| ||||||||| ||||||||||||||| |||| ||||| |||||    
T  42545814 taggggtaggcatggttcggttaaccatattaaccgaaccgaactgaacc 42545765  T

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Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 397 - 477
Target Start/End: Original strand, 37194009 - 37194088
Alignment:
Q  397 gaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgtttgtttctattttaagat 477  Q
    ||||||||||||||||||  ||||||  | |||||||||| |||| ||||| ||||||||| |||  || |||||||||||    
T  37194009 gaaattgtgcattcataactttaaaatcttaaaaacttat-ttttaaataccatatttattatttaattatattttaagat 37194088  T

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Target: scaffold0488 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0488
Description:

Target: scaffold0488; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 81 - 248
Target Start/End: Complemental strand, 7549 - 7382
Alignment:
Q  81 taggggtgggcatggtttggttaaccatattaatcgaatcgaaccgaaccgcagtgttgaaatggtttggaataatcgaaccgaaccgtttaaggtttga 180  Q
    |||||||||||||||||  |||||||  |  || | || |||||||||||| | | ||||||||||| || | ||  ||| |||||||||| | || ||     
T  7549 taggggtgggcatggttcagttaacctaaaaaaccaaaccgaaccgaaccgaaattttgaaatggttcgggaaaactgaatcgaaccgtttcacgtatgg 7450  T
Q  181 agctatccgaactgatccaaagttatgcttcggttaaccgtttgtttgtctattaaccaaaccgaacc 248  Q
    ||||| ||||||||| ||||||||||| |||||||||||||||  ||  |||| |||| |||||||||    
T  7449 agctaaccgaactgaaccaaagttatggttcggttaaccgttttcttacctatgaaccgaaccgaacc 7382  T

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Target: scaffold0172 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 446
Target Start/End: Complemental strand, 26451 - 26389
Alignment:
Q  384 aaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaata 446  Q
    ||||||||||| | ||||||||||||||||| |||||||| | ||||| ||||||| ||||||    
T  26451 aaatttaacctcgaaaattgtgcattcataaccttaaaagattaaaaatttatattatcaata 26389  T

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Target: scaffold0129 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 483
Target Start/End: Original strand, 37448 - 37511
Alignment:
Q  420 aaagttcaaaaacttatattttcaatacaatatttattgtttgtttctattttaagatccttat 483  Q
    |||||| ||| ||||||||||||||| ||||||||||| |||  ||||||||||| || |||||    
T  37448 aaagtttaaacacttatattttcaatgcaatatttattttttaattctattttaatattcttat 37511  T

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Target: scaffold0519 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 422
Target Start/End: Complemental strand, 11106 - 11017
Alignment:
Q  332 agggtcttgttaacttgtgcccttatgacacaacataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaa 422  Q
    ||||||||||||||||||| | | | ||||||| |||| |||  ||||||| ||| ||||||||| ||| |||||||||| || |||||||    
T  11106 agggtcttgttaacttgtgtcttaaagacacaagataaaaaattaaataaa-aaaattaaccttgtaaagtgtgcattcacaaccttaaaa 11017  T

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