View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18638_low_1 (Length: 825)
Name: NF18638_low_1
Description: NF18638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18638_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 664; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 664; E-Value: 0
Query Start/End: Original strand, 1 - 688
Target Start/End: Original strand, 12956137 - 12956824
Alignment:
| Q |
1 |
gcctactcctttgacacccggggatttgtgggccaatacaactgagtcgccaatctctgcttacatgcggtatcttcagaattcgatgatggatccaggt |
100 |
Q |
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| T |
12956137 |
gcctactcctttgacacccggggatttgtgggccaatacaactgagtcgccaatctctgcttacatgcggtatcttcagaattcgatgatggatccaggt |
12956236 |
T |
|
| Q |
101 |
tcaaggggtaatcaatttccgactcagcctcaaccacatccataccctcaacagcaagtacaaggaaattatcagcctcaacctcctccaccggctttgc |
200 |
Q |
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| T |
12956237 |
tcaaggggtaatcaatttccgcctcagcctcaaccacatccataccctcaacagcaagtacaaggaaattatcagcctcaacctcctccaccggctttgc |
12956336 |
T |
|
| Q |
201 |
ttcctaaccctaacgtgccaccgatcccttctccaaggtttaacaatggtcctgtaccgccaatgaatgcccataatcatccaatgcctagtattccttc |
300 |
Q |
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| T |
12956337 |
ttcctaaccctaatgtgccaccgatcccttctccaaggtttaacaatggtcctctaccgccaatgaatgcccataatcatccaatgcctagtattccttc |
12956436 |
T |
|
| Q |
301 |
accacatggaaatggccctccccttttaccttctccaacctctcaatttctcttgccttctccaactggttacatgaatttactgtcccctcggtcacct |
400 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12956437 |
accgcatggaaatggccctccccttttaccttctccaacctctcaatttctcttgccttctccaactggttacatgaatttactgtcccctcggtcacct |
12956536 |
T |
|
| Q |
401 |
tatccactattgtcacccggctttcagtttccatcaccactacccaatttttcgttctcacccatggcacagtcaggaattttagggcctggccctcaac |
500 |
Q |
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| T |
12956537 |
tatccactattgtcacccggctttcagtttccatcaccactacccaattttccgttctcacccatgggacagtcaggaattttagggcctggccctcaac |
12956636 |
T |
|
| Q |
501 |
caccaccttctcccggccttatgtttccattatctccttcaagcttcttcaccatgccaagtcctaggtggagagatcaatagtcttctcaaattgtgca |
600 |
Q |
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| T |
12956637 |
caccaccttctcccggccttatgtttccattatctccttcaagcttcttcaccatgccaagtcctaggtggagagatcaatagtcttctcaaattgtgca |
12956736 |
T |
|
| Q |
601 |
tacatgtttgattggggatgcttccttctaactggacagatcttagtcttgttcattagcatgtaatgtacaaacaagttgtaagagc |
688 |
Q |
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| T |
12956737 |
tacatgtttgattggggatgcttccttctaactggacagatcttagtcttgttcattagcatgtaatgtacaaacaagttgtaagagc |
12956824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 749 - 809
Target Start/End: Original strand, 12956884 - 12956944
Alignment:
| Q |
749 |
ttgataaccataatggtttcgattcttttactttgacaagttttacattaggcaatatatt |
809 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12956884 |
ttgataaccataatggtttcgattcttttactttgacaagttttacattaggcaatatatt |
12956944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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