View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18638_low_10 (Length: 442)
Name: NF18638_low_10
Description: NF18638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18638_low_10 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: scaffold0027 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 17 - 432
Target Start/End: Complemental strand, 20220 - 19805
Alignment:
| Q |
17 |
acttgtatgttttagttttcaatcatcagtgttttactttgactaccgatcacacactatagtcatttcatgcatcataattatttcgattatattattt |
116 |
Q |
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| T |
20220 |
acttgtatgttttagttttcaatcatcagtgttttactttgactaccgatcacacactatagtcatttcatgcatcataattatttcgattatattattt |
20121 |
T |
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| Q |
117 |
tttaaatacattagaacattttcaagcagagaatgttctctaactaacttttatatacattccaacttcatgttgagatagatcttattaggtgtagatt |
216 |
Q |
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| T |
20120 |
tttaaatacattagaacattttcaagcagagaatgttctctaactaacttttatatacattccaacttcatgttgagatagatcttattaggtgtagatt |
20021 |
T |
|
| Q |
217 |
catttttaatcattttaaagagagacaatacaaactccattttcatgtgacaatgtgatcgttcatttgtcacactttatggtatattcatcgcccaagt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20020 |
catttttaatcattttaaagagagacaatacaaactccattttcatgtgacaatgtgatcgttcatttgtcacactttatggtatattcatcgcccaagt |
19921 |
T |
|
| Q |
317 |
gtgaacacctaacctaatcatcgaaactttatttcacaacaaatacagttttccacacatgtctcctatatctaagtgtgtgtaacacacacacgagttt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
19920 |
gtgaacacctaacctaatcatcgaaactttatttcacaacaaatacagttttccacacatgtctcctatatctatgtgtgtgtaacacatacacgagttt |
19821 |
T |
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| Q |
417 |
aggtagtaagtgtaat |
432 |
Q |
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|||||| ||||||||| |
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| T |
19820 |
aggtaggaagtgtaat |
19805 |
T |
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