View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18638_low_14 (Length: 357)
Name: NF18638_low_14
Description: NF18638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18638_low_14 |
 | |
|
| [»] scaffold0186 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 13 - 339
Target Start/End: Original strand, 38731997 - 38732323
Alignment:
| Q |
13 |
tatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatga |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38731997 |
tatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacggtactccactgatga |
38732096 |
T |
|
| Q |
113 |
catatgctgacataacccatccatcaggatagctacaagaaaatcatgagaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgattatg |
212 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38732097 |
catatgctgacacaacccatccatcaggatagctacaagaaaatcatgagaatttgttgctttcaaacatcctaaaagtgacttctgtctagtgatcatg |
38732196 |
T |
|
| Q |
213 |
tcaaacttaacttccatatcttgaacacttttactaaaatggacaatcgtcaaaacatgttatgctttaggaagaacgttatccttctaagtaaaactgc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
38732197 |
tcaaacttaacttccatatcttgaacacttttactaaaatggacaatcgtcaaaacttgttgtgctttaggaaggacgttgtccttctaagtaaaactgc |
38732296 |
T |
|
| Q |
313 |
tagtatcaaaatatgaaagtataggtt |
339 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
38732297 |
tagtatcaaaatatgaaagtataggtt |
38732323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 48 - 281
Target Start/End: Original strand, 19035876 - 19036109
Alignment:
| Q |
48 |
tcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatgacatatgctgacataacccatccatcaggatagcta |
147 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||| |||| |||| ||| ||||||||| |
|
|
| T |
19035876 |
tcatcaaaaggatatagtggaatcataaggcgatatctaaggatagtatgatactccactggtgacatatgttgacctaactcatcaatcgggatagcta |
19035975 |
T |
|
| Q |
148 |
caagaaaatcatgagaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgattatgtcaaacttaacttccatatcttgaacacttttact |
247 |
Q |
| |
|
||||||||| ||| ||||| ||||| | |||||| |||| || ||| ||||| ||| | ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
19035976 |
gaagaaaatcccgagcatgtgctgcttgcagacatccaaaaattgccttttgtctcgtggtcatgtcaaacttaacttccatatcctgaacacttttact |
19036075 |
T |
|
| Q |
248 |
aaaatggacaatcgtcaaaacatgttatgcttta |
281 |
Q |
| |
|
|||| | || ||| ||||||||||| ||||||| |
|
|
| T |
19036076 |
aaaaagagcactcgccaaaacatgttgtgcttta |
19036109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 48 - 270
Target Start/End: Original strand, 37200704 - 37200926
Alignment:
| Q |
48 |
tcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatgacatatgctgacataacccatccatcaggatagcta |
147 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||| |||||| || |
|
|
| T |
37200704 |
tcatcaataggaaatagtggaattataaggcgatatctaaggatagtatgatactccactagtgacatatgctgacctaacccatccatatggatagtta |
37200803 |
T |
|
| Q |
148 |
caagaaaatcatgagaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgattatgtcaaacttaacttccatatcttgaacacttttact |
247 |
Q |
| |
|
|||||||| ||||| ||||| | ||| | |||| | ||||| || ||| || ||||| | |||||||| |||||||||||||||||||||||||| || |
|
|
| T |
37200804 |
aaagaaaatgatgagcatgtgctacttgcaaacaccttaaaattgtcttatgcgtagtggtcatgtcaaatttaacttccatatcttgaacacttttcct |
37200903 |
T |
|
| Q |
248 |
aaaatggacaatcgtcaaaacat |
270 |
Q |
| |
|
|||| ||||| || |||||||| |
|
|
| T |
37200904 |
aaaaaggacactcaccaaaacat |
37200926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 56 - 284
Target Start/End: Complemental strand, 28040777 - 28040550
Alignment:
| Q |
56 |
aggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatgacatatgctgacataacccatccatcaggatagctacaagaaaa |
155 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||| ||||| ||| ||| ||||||||| ||||||| |
|
|
| T |
28040777 |
aggaaataatggaatcataaggcgatatctaaggatagtatgatactccactggtgacatatgttgacctaaccaatcaatcgggatagctagaagaaaa |
28040678 |
T |
|
| Q |
156 |
tcatgagaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgattatgtcaaacttaacttccatatcttgaacacttttactaaaatgga |
255 |
Q |
| |
|
|| |||| |||| ||||| | ||||||| |||| || ||||||||| ||| | ||||||||||||| ||||||||| || ||| ||||||||||| | |
|
|
| T |
28040677 |
tcttgagcatgttctgcttgcaaacatccaaaaattgccttctgtctcgtggtcatgtcaaacttaatttccatatcctg-acatttttactaaaaagag |
28040579 |
T |
|
| Q |
256 |
caatcgtcaaaacatgttatgctttagga |
284 |
Q |
| |
|
|| ||| |||||||||| |||||||||| |
|
|
| T |
28040578 |
cactcgcaaaaacatgttgtgctttagga |
28040550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 58 - 310
Target Start/End: Complemental strand, 7794563 - 7794313
Alignment:
| Q |
58 |
gaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatgacatatgctgacataacccatccatcaggatagctacaagaaaatc |
157 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||| | | |||||||||| ||| ||||| |||| ||||||||| || |||||||||| ||||||||| |
|
|
| T |
7794563 |
gaaataatggaatcataaggcgatatcaaaggatagcatggtactccactggtgatatatgttgacctaacccatcaataaggatagctataagaaaatc |
7794464 |
T |
|
| Q |
158 |
atgagaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgattatgtcaaacttaacttccatatcttgaacacttttactaaaatggaca |
257 |
Q |
| |
|
||||| ||||| || ||| |||| ||||||| | ||||||||||||| | |||| ||||||||||||||||| |||| ||||||||||||| | || |
|
|
| T |
7794463 |
atgagcatgtgatgtttttgaacgccctaaaactatcttctgtctagtggtcatgtaaaacttaacttccatattttga--acttttactaaaacgagca |
7794366 |
T |
|
| Q |
258 |
atcgtcaaaacatgttatgctttaggaagaacgttatccttctaagtaaaact |
310 |
Q |
| |
|
||| |||| |||||||| ||||||| | ||| ||||||| |||||||||| |
|
|
| T |
7794365 |
ctcgctaaaatatgttatgttttaggagggacgatatccttgcaagtaaaact |
7794313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 56 - 161
Target Start/End: Original strand, 22375176 - 22375280
Alignment:
| Q |
56 |
aggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatgacatatgctgacataacccatccatcaggatagctacaagaaaa |
155 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| |||||| || |||||||||| |||| ||||| ||| || | ||||||| ||||||| |
|
|
| T |
22375176 |
aggaaatagtagaatcataaggcgatatctaaggatagtacgttactcccct-atgacatatgttgacctaaccgatcaatatgaatagctagaagaaaa |
22375274 |
T |
|
| Q |
156 |
tcatga |
161 |
Q |
| |
|
|||||| |
|
|
| T |
22375275 |
tcatga |
22375280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 147
Target Start/End: Original strand, 34645026 - 34645114
Alignment:
| Q |
59 |
aaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatgacatatgctgacataacccatccatcaggatagcta |
147 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||| |||| |||| |||| ||||||||||||| | ||||||| || |||||||||| |
|
|
| T |
34645026 |
aaatagtggaatcataagacgatatcgaaggataatacggtacttcactagtgacatatgctgatcttacccatcaattaggatagcta |
34645114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 272
Target Start/End: Original strand, 15585350 - 15585533
Alignment:
| Q |
89 |
gatagtacgatactccactgatgacatatgctgacataacccatccatcaggatagctacaagaaaatcatgagaatgtgttgctttcgaacatcctaaa |
188 |
Q |
| |
|
|||||||| |||||| |||| |||||||| || | ||||||||| || ||||||||| ||| ||||| |||| ||||||||||| | || | || ||| |
|
|
| T |
15585350 |
gatagtacaatactctactggtgacatattttggcctaacccatcaatagggatagctaaaagtaaatcttgagcatgtgttgcttgcaaatacccaaaa |
15585449 |
T |
|
| Q |
189 |
agtgacttctgtctagtgattatgtcaaacttaacttccatatcttgaacacttttactaaaatggacaatcgtcaaaacatgt |
272 |
Q |
| |
|
| || |||| | | | | |||||||||| | |||||| || |||||||||||||||||| || || |||||||||||||| |
|
|
| T |
15585450 |
actgcattctattttgcgtccatgtcaaactgtatttccatgtcctgaacacttttactaaaaagggcactcgtcaaaacatgt |
15585533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 972268 - 972325
Alignment:
| Q |
215 |
aaacttaacttccatatcttgaacacttttactaaaatggacaatcgtcaaaacatgtt |
273 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||| ||||| ||| ||||||||||| |
|
|
| T |
972268 |
aaacttaactttcatatcttgaacactttcactaaaa-ggacactcgccaaaacatgtt |
972325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 35387011 - 35386927
Alignment:
| Q |
11 |
aatatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagta |
95 |
Q |
| |
|
|||||||| ||||||||||||| ||||| |||| | ||||||| | |||||||| ||| ||||| ||||||||||| |||||| |
|
|
| T |
35387011 |
aatatccaagcacaccttacgacaaacaggacatgcctcatcaataaaaaatagtgaaattataagtcgatatctaagaatagta |
35386927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 13 - 284
Target Start/End: Complemental strand, 15291716 - 15291445
Alignment:
| Q |
13 |
tatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatga |
112 |
Q |
| |
|
||||||| ||| |||||||| ||||| ||| || ||||||| || |||||||||||||||| | ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
15291716 |
tatccagacacgccttacgataaacatgacacacctcatcaatagaaaatagtggaatcatacgacgatatctaaggatagtacgatactccactggtga |
15291617 |
T |
|
| Q |
113 |
catatgctgacataacccatccatcaggatagctacaagaaaatcatgagaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgattatg |
212 |
Q |
| |
|
||||||||||| ||||||||| || ||||||||| ||||||||| ||| ||||| ||||| | ||||||| |||| || ||||||||| ||| | ||| |
|
|
| T |
15291616 |
catatgctgacctaacccatcaattgggatagctagaagaaaatcccgagcatgtgctgcttgcaaacatcccaaaattgccttctgtctcgtggtcatg |
15291517 |
T |
|
| Q |
213 |
tcaaacttaacttccatatcttgaacacttttactaaaatggacaatcgtcaaaacatgttatgctttagga |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||| ||||||||| |
|
|
| T |
15291516 |
tcaaacttaacttccatatcttgaacacttttactaaaaagagcactcgtcaaaacatgttccgctttagga |
15291445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 48 - 314
Target Start/End: Original strand, 27337142 - 27337408
Alignment:
| Q |
48 |
tcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatgacatatgctgacataacccatccatcaggatagcta |
147 |
Q |
| |
|
||||||| |||||| |||||||||||||| ||||||| |||||||||||| ||||| |||| ||||||||||| || ||||||||| || ||||||||| |
|
|
| T |
27337142 |
tcatcaataggaaaaagtggaatcataagacgatatcgaaggatagtacggtactcaactggtgacatatgctaacctaacccatcaattgggatagcta |
27337241 |
T |
|
| Q |
148 |
caagaaaatcatgagaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgattatgtcaaacttaacttccatatcttgaacacttttact |
247 |
Q |
| |
|
||||||||| |||| ||||| || || | ||||||| |||| || ||||||||||||| | |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
27337242 |
aaagaaaatcttgagcatgtggtggttgcaaacatcccaaaactgccttctgtctagtggtcatgtcaaacttaacttccatatcttgaacaactttact |
27337341 |
T |
|
| Q |
248 |
aaaatggacaatcgtcaaaacatgttatgctttaggaagaacgttatccttctaagtaaaactgcta |
314 |
Q |
| |
|
|||| | || ||| ||||||||||| |||||||||| | ||| | ||||| |||||||||||||| |
|
|
| T |
27337342 |
aaaaagagcactcgccaaaacatgttgtgctttaggagggacggtgtccttgcaagtaaaactgcta |
27337408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 433706 - 433944
Alignment:
| Q |
13 |
tatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatga |
112 |
Q |
| |
|
||||||| ||| |||||||| ||||| || || ||||||| |||||| |||||||||||||| ||||||| ||||||||| |||||||| | || ||| |
|
|
| T |
433706 |
tatccagacacgccttacgacaaacagtgcacacctcatcaataggaaaaagtggaatcataagacgatatcgaaggatagtccgatactcaattggtga |
433805 |
T |
|
| Q |
113 |
catatgctgacataacccatccatcaggatagctacaagaaaatcatgagaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgattatg |
212 |
Q |
| |
|
||||||||| | ||||||||| || ||||||||| ||||||||| |||| ||||| ||||| | |||||||||||| | |||||| |||||| | || |
|
|
| T |
433806 |
catatgctggcctaacccatcaattgggatagctagaagaaaatcttgagcatgtggtgcttgcaaacatcctaaaactaccttctgcctagtggtcatt |
433905 |
T |
|
| Q |
213 |
tcaaacttaacttccatatcttgaacacttttactaaaa |
251 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
433906 |
tcaaacttaagttccatatcttgaacaactttactaaaa |
433944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 48 - 189
Target Start/End: Complemental strand, 3113824 - 3113683
Alignment:
| Q |
48 |
tcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatgacatatgctgacataacccatccatcaggatagcta |
147 |
Q |
| |
|
||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||| ||| |||| ||| ||||||||| |
|
|
| T |
3113824 |
tcatcaataggagatagtggaatcataaggcaatatctaaggatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagcta |
3113725 |
T |
|
| Q |
148 |
caagaaaatcatgagaatgtgttgctttcgaacatcctaaaa |
189 |
Q |
| |
|
|||||||| |||| ||||| ||||| | |||| ||||||| |
|
|
| T |
3113724 |
ggagaaaatcttgagcatgtgctgcttccaaacaccctaaaa |
3113683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 25663007 - 25662861
Alignment:
| Q |
16 |
ccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatgacat |
115 |
Q |
| |
|
|||| ||| |||||||| |||||| || || ||||||| ||||||||||||||||||||| ||||||| |||||||||||| || ||||||| |||||| |
|
|
| T |
25663007 |
ccagacacgccttacgacaaacaaggcacacctcatcaataggaaatagtggaatcataagacgatatcgaaggatagtacggtattccactggtgacat |
25662908 |
T |
|
| Q |
116 |
atgctgacataacccatccatcaggatagctacaagaaaatcatgag |
162 |
Q |
| |
|
|||||||| |||||||| || ||||||||| ||||||||| |||| |
|
|
| T |
25662907 |
atgctgacccaacccatcaattgggatagctagaagaaaatcttgag |
25662861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 156
Target Start/End: Complemental strand, 32269473 - 32269343
Alignment:
| Q |
26 |
cttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatgacatatgctgacat |
125 |
Q |
| |
|
||||||| | |||| |||||| ||||||| || |||||||||||||||||| | ||||| |||||||||| ||||| |||| | |||||| ||||| | |
|
|
| T |
32269473 |
cttacgacacacaagacatacctcatcaatagaaaatagtggaatcataagacaatatccaaggatagtataatacttcactagtaacatatcctgacct |
32269374 |
T |
|
| Q |
126 |
aacccatccatcaggatagctacaagaaaat |
156 |
Q |
| |
|
|||||||| ||||||||||||| |||||||| |
|
|
| T |
32269373 |
aacccatcaatcaggatagctaaaagaaaat |
32269343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 157
Target Start/End: Complemental strand, 26212276 - 26212132
Alignment:
| Q |
13 |
tatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatga |
112 |
Q |
| |
|
||||||||||| |||||||| ||||| ||| || ||||||| |||||||| || |||||||| ||||||||||||| ||||||||||| ||||| ||| |
|
|
| T |
26212276 |
tatccaggcacgccttacgacaaacaggacacacttcatcaataggaaataatgaaatcataaagcgatatctaaggtcagtacgatacttcactggtga |
26212177 |
T |
|
| Q |
113 |
catatgctgacataacccatccatcaggatagctacaagaaaatc |
157 |
Q |
| |
|
|| | | |||| ||| ||||| |||| ||||||| ||||||||| |
|
|
| T |
26212176 |
caaaagatgacctaatccatcaatcaaaatagctagaagaaaatc |
26212132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 110 - 246
Target Start/End: Complemental strand, 6534159 - 6534023
Alignment:
| Q |
110 |
tgacatatgctgacataacccatccatcaggatagctacaagaaaatcatgagaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgatt |
209 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||| || | ||| ||||| |||| | |||||| ||||| ||||| |||| |||| |
|
|
| T |
6534159 |
tgacatatgctgacctaacccatcaatcaggatagctagaaattttttttgaacatgtgccgcttacaaacatcataaaaccatcttctatctaatgatc |
6534060 |
T |
|
| Q |
210 |
atgtcaaacttaacttccatatcttgaacacttttac |
246 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
6534059 |
atgtcaaacttaacttccatatcttaaacacttttac |
6534023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 35456222 - 35456283
Alignment:
| Q |
59 |
aaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatgacatatgct |
120 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| | |||||| | ||||||||||| |
|
|
| T |
35456222 |
aaatagtggaatcataaggtgatatctaaggatagtatggtactccgtttgtgacatatgct |
35456283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 48 - 281
Target Start/End: Complemental strand, 9685073 - 9684840
Alignment:
| Q |
48 |
tcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatgacatatgctgacataacccatccatcaggatagcta |
147 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| || ||||||||| |
|
|
| T |
9685073 |
tcatcaataggaaatagtggaatcgtaaggcgatatctaaggatagtacgatactccactggtgacatatgctgacctaacccatcaatagggatagcta |
9684974 |
T |
|
| Q |
148 |
caagaaaatcatgagaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgattatgtcaaacttaacttccatatcttgaacacttttact |
247 |
Q |
| |
|
||||||||| |||| ||||| ||||| | ||||||| |||| || ||||||||| ||| | ||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
9684973 |
gaagaaaatcttgagtatgtgctgcttgcaaacatccaaaaattgccttctgtctcgtggtcatgtcaaacttaacttccatatcctgaacacttttatt |
9684874 |
T |
|
| Q |
248 |
aaaatggacaatcgtcaaaacatgttatgcttta |
281 |
Q |
| |
|
|||| | || || ||||||||||| ||||||| |
|
|
| T |
9684873 |
aaaaagagcactcaccaaaacatgttgtgcttta |
9684840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 56 - 245
Target Start/End: Complemental strand, 19161476 - 19161287
Alignment:
| Q |
56 |
aggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatgacatatgctgacataacccatccatcaggatagctacaagaaaa |
155 |
Q |
| |
|
||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||| ||||||| |
|
|
| T |
19161476 |
aggaaatagtgcaatcataagacgatatctaatgatagtacgatactccactgatgacatatgctgacctaacctatcaatcaggatagctagaagaaaa |
19161377 |
T |
|
| Q |
156 |
tcatgagaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgattatgtcaaacttaacttccatatcttgaacactttta |
245 |
Q |
| |
|
|| |||| || | |||||| | ||||||||||| || ||||||||| ||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19161376 |
tcctgagcatatattgcttgcaaacatcctaaagttgtcttctgtctcgtgatcatgtcaaacttaacttccatatcttgaacattttta |
19161287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 13 - 284
Target Start/End: Original strand, 17345052 - 17345323
Alignment:
| Q |
13 |
tatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatga |
112 |
Q |
| |
|
||||||||||| |||||||| ||||| || || ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
17345052 |
tatccaggcacgccttacgacaaacagggcacacctcatcaataggaaatagtggattcataaggcgatatctaaggatagtacgatactccactagtga |
17345151 |
T |
|
| Q |
113 |
catatgctgacataacccatccatcaggatagctacaagaaaatcatgagaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgattatg |
212 |
Q |
| |
|
||||||| ||| ||||||||| || ||||||||| ||||||||| |||| ||||| | ||| | ||||||| |||| || ||| ||||| ||| | ||| |
|
|
| T |
17345152 |
catatgccgacctaacccatcaattgggatagctagaagaaaatcttgagcatgtggttcttgcaaacatccaaaaattgtcttttgtctggtggtcatg |
17345251 |
T |
|
| Q |
213 |
tcaaacttaacttccatatcttgaacacttttactaaaatggacaatcgtcaaaacatgttatgctttagga |
284 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| | || || ||||||| ||| |||||||||| |
|
|
| T |
17345252 |
tcaaacttaacttccatatgctgaacacttttactaaaaagagcactcaccaaaacaagttgtgctttagga |
17345323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 13 - 284
Target Start/End: Complemental strand, 20142433 - 20142167
Alignment:
| Q |
13 |
tatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatga |
112 |
Q |
| |
|
||||||| ||| |||||||| ||||| || || |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
20142433 |
tatccagacacgccttacgacaaacagggcacacctcatcattaggaaatagtggaatcataaggcgatatctaaggatagtacaatactccactgttga |
20142334 |
T |
|
| Q |
113 |
catatgctgacataacccatccatcaggatagctacaagaaaatcatgagaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgattatg |
212 |
Q |
| |
|
||||||||||| ||||||||| ||| ||||||||| ||||||||| |||| ||||| ||||| | ||||||| |||| || ||| | ||| | ||| |
|
|
| T |
20142333 |
catatgctgacttaacccatcaatcgggatagctagaagaaaatcctgagcatgtgctgcttgcaaacatccaaaaattgcctt-----ttgtggtcatg |
20142239 |
T |
|
| Q |
213 |
tcaaacttaacttccatatcttgaacacttttactaaaatggacaatcgtcaaaacatgttatgctttagga |
284 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||| | || ||| ||| ||||||| |||||||||| |
|
|
| T |
20142238 |
tcaaacttaacttccatatcctgaacgcttttactaaaaagagcactcgccaagacatgttgtgctttagga |
20142167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 13 - 284
Target Start/End: Complemental strand, 41867601 - 41867330
Alignment:
| Q |
13 |
tatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatga |
112 |
Q |
| |
|
||||||| ||| ||||||| ||||| | || || ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
41867601 |
tatccagacacgacttacgacaaacagagcacacctcatcaataggaaatagtggaatcataagacgatatctaaggatagtacgatactccactggtga |
41867502 |
T |
|
| Q |
113 |
catatgctgacataacccatccatcaggatagctacaagaaaatcatgagaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgattatg |
212 |
Q |
| |
|
||||||||||| ||||||||| ||| ||||||||| |||||||| |||| ||||| ||||| | ||||| | |||| | |||||| | ||| | ||| |
|
|
| T |
41867501 |
catatgctgacctaacccatcaatcgggatagctagaagaaaattctgagcatgtgctgcttgcaaacattcaaaaatcgccttctgccccgtggtcatg |
41867402 |
T |
|
| Q |
213 |
tcaaacttaacttccatatcttgaacacttttactaaaatggacaatcgtcaaaacatgttatgctttagga |
284 |
Q |
| |
|
|||||||| ||||||||||| || ||||||||||||||| | || ||| ||||| ||||| || ||||||| |
|
|
| T |
41867401 |
tcaaacttgacttccatatcctggacacttttactaaaaagagcactcgccaaaatatgttgtgttttagga |
41867330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 74 - 284
Target Start/End: Complemental strand, 18744650 - 18744440
Alignment:
| Q |
74 |
aaggcgatatctaaggatagtacgatactccactgatgacatatgctgacataacccatccatcaggatagctacaagaaaatcatgagaatgtgttgct |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||| ||| ||||||||| |||||| || |||| || || |||| |
|
|
| T |
18744650 |
aaggcgatatctaaggatagtacgatactccactggtgacatatgctaacctaacccatcaatcgggatagctagaagaaattcttgagcatttggtgct |
18744551 |
T |
|
| Q |
174 |
ttcgaacatcctaaaagtgacttctgtctagtgattatgtcaaacttaacttccatatcttgaacacttttactaaaatggacaatcgtcaaaacatgtt |
273 |
Q |
| |
|
| | ||||||| |||| || ||||||||| ||| | || |||||||||||||||||||| |||||||||||||||||| | || ||| ||||||||||| |
|
|
| T |
18744550 |
tgcaaacatccaaaaattgccttctgtctcgtggtcatctcaaacttaacttccatatcctgaacacttttactaaaaagagcactcgccaaaacatgtt |
18744451 |
T |
|
| Q |
274 |
atgctttagga |
284 |
Q |
| |
|
|||||||||| |
|
|
| T |
18744450 |
gtgctttagga |
18744440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 44686831 - 44687045
Alignment:
| Q |
13 |
tatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatga |
112 |
Q |
| |
|
||||||| |||| ||||||| ||||| ||| || ||||||| |||| |||||||||||||||| ||||||| |||||||||||||||||||| || ||| |
|
|
| T |
44686831 |
tatccagacacatcttacgacaaacaggacacacctcatcaataggacatagtggaatcataagacgatatcgaaggatagtacgatactccattggtga |
44686930 |
T |
|
| Q |
113 |
catatgctgacataacccatccatcaggatagctacaagaaaatcatgagaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgattatg |
212 |
Q |
| |
|
||||| ||||| ||||||||| || |||||||| ||||||||| | || ||||| ||||| | ||||||| |||| || ||||| ||||||| ||||| |
|
|
| T |
44686931 |
catatactgacctaacccatcaattgagatagctagaagaaaatcttaagcatgtgctgcttgcaaacatccaaaaactgccttctatctagtgtttatg |
44687030 |
T |
|
| Q |
213 |
tcaaacttaacttcc |
227 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
44687031 |
tcaaacttaacttcc |
44687045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 4412759 - 4412598
Alignment:
| Q |
13 |
tatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatga |
112 |
Q |
| |
|
||||||| ||| |||||||| ||||| || || ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4412759 |
tatccagacacgccttacgaccaacaaggcacacctcatcaataggaaatagtggaatcataagacgatatctaaggatagtacgatactccactggtga |
4412660 |
T |
|
| Q |
113 |
catatgctgacataacccatccatcaggatagctacaagaaaatcatgagaatgtgttgctt |
174 |
Q |
| |
|
||||||||||| |||| |||| ||| ||||||||| ||||||||| |||| ||||||||||| |
|
|
| T |
4412659 |
catatgctgacctaactcatcaatcgggatagctagaagaaaatcctgagcatgtgttgctt |
4412598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 59 - 311
Target Start/End: Original strand, 28225460 - 28225711
Alignment:
| Q |
59 |
aaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatgacatatgctgacataacccatccatcaggatagctacaagaaaatca |
158 |
Q |
| |
|
||||| |||||||||||| |||||| | |||||||||| |||||| ||| ||||||||||||| ||||||||| || ||||||||| ||||||||| |
|
|
| T |
28225460 |
aaataatggaatcataagatgatatcgacggatagtacggtactccgctggtgacatatgctgatctaacccatcaatt-ggatagctagaagaaaatct |
28225558 |
T |
|
| Q |
159 |
tgagaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgattatgtcaaacttaacttccatatcttgaacacttttactaaaatggacaa |
258 |
Q |
| |
|
|||| ||||| | ||| | ||||||| ||| | ||||||||||||| | ||||||||| |||||||||||||||||||| ||||||||||| | || |
|
|
| T |
28225559 |
tgagcatgtgcttcttgcaaacatccaaaacccgccttctgtctagtggtcatgtcaaacataacttccatatcttgaacaattttactaaaaagagcac |
28225658 |
T |
|
| Q |
259 |
tcgtcaaaacatgttatgctttaggaagaacgttatccttctaagtaaaactg |
311 |
Q |
| |
|
||| ||||| ||||| |||||||||| | ||| | ||||| ||||||||||| |
|
|
| T |
28225659 |
tcgccaaaatatgttgtgctttaggagggacggtgtccttgcaagtaaaactg |
28225711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 210 - 280
Target Start/End: Original strand, 8588696 - 8588766
Alignment:
| Q |
210 |
atgtcaaacttaacttccatatcttgaacacttttactaaaatggacaatcgtcaaaacatgttatgcttt |
280 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||| ||||| ||| ||||||||||| |||||| |
|
|
| T |
8588696 |
atgtcaaacttgacttccatatcttgaacacttttattaaaaaggacactcgccaaaacatgttgtgcttt |
8588766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 225
Target Start/End: Complemental strand, 33612234 - 33612032
Alignment:
| Q |
13 |
tatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatga |
112 |
Q |
| |
|
||||||| ||||| |||||| ||||| ||| || ||||||| | ||||||||| |||||||||| |||||||| ||||||| |||| | || || ||| |
|
|
| T |
33612234 |
tatccagacacactttacgacaaacatgacacacctcatcaatatgaaatagtgaaatcataaggtgatatctagggatagtgtgatatttcaatggtga |
33612135 |
T |
|
| Q |
113 |
catatgctgacataacccatccatcaggatagctacaagaaaatcatgagaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgattatg |
212 |
Q |
| |
|
||||| ||||||| || |||| |||| || ||||||| ||| ||||||||||| | |||| ||||||| | ||| ||||| ||||| ||| |
|
|
| T |
33612134 |
catat---------acccatcaatagggattgctagaa-aaaatcacgagcatgtgttgcttgcaaacaccctaaaattatcttttgtcttgtgataatg |
33612045 |
T |
|
| Q |
213 |
tcaaacttaactt |
225 |
Q |
| |
|
||||||||||||| |
|
|
| T |
33612044 |
tcaaacttaactt |
33612032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 251
Target Start/End: Complemental strand, 34185552 - 34185514
Alignment:
| Q |
213 |
tcaaacttaacttccatatcttgaacacttttactaaaa |
251 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34185552 |
tcaaacttcacttccatatcttgaacacttttactaaaa |
34185514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 284
Target Start/End: Original strand, 53170916 - 53171183
Alignment:
| Q |
17 |
caggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatgacata |
116 |
Q |
| |
|
||||||| |||||||| ||||| || || ||||||| || ||||||||||||| ||||| ||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
53170916 |
caggcacgccttacgacaaacagggcacacctcatcaatagaaaatagtggaatcgtaaggtgatatctaaagatagtacgatactccactgatgatata |
53171015 |
T |
|
| Q |
117 |
tgctgacataacccatccatcaggatagctacaagaaaatcatgagaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgattatgtcaa |
216 |
Q |
| |
|
|||||| ||||||||| || |||||||||| ||||||||| |||| ||||| ||||| | ||||||| |||| || |||| ||| ||| ||||||||| |
|
|
| T |
53171016 |
tgctgaactaacccatcaattaggatagctagaagaaaatcctgagcatgtgctgcttgcaaacatccaaaaattgttttctttctcgtggttatgtcaa |
53171115 |
T |
|
| Q |
217 |
acttaacttccatatcttgaacacttttactaaaatggacaatcgtcaaaacatgttatgctttagga |
284 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| | || ||| ||||||||||| |||||||||| |
|
|
| T |
53171116 |
acttaacttccatattttgaacacttttactaaaaagagcactcgccaaaacatgttgtgctttagga |
53171183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 56461809 - 56461570
Alignment:
| Q |
11 |
aatatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||| || || ||||||| || ||||||||||||||||||| |||||||||||| ||||||||||||| || | |
|
|
| T |
56461809 |
aatatccaggcacaccttacgaaaaacagggcacacctcatcaatagaaaatagtggaatcataaggttatatctaaggatggtacgatactccattggt |
56461710 |
T |
|
| Q |
111 |
gacatatgctgacataacccatccatcaggatagctacaagaaaatcatgagaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgatta |
210 |
Q |
| |
|
|| ||||| |||| ||||| ||| || | |||||||| || |||||| |||| ||||| || || | |||||||||||| | ||||||||||||| | | |
|
|
| T |
56461709 |
gatatatgatgacctaaccaatcaattatgatagctagaaaaaaatcttgagcatgtgctgtttgcaaacatcctaaaacttccttctgtctagtggtca |
56461610 |
T |
|
| Q |
211 |
tgtcaaacttaacttccatatcttgaacacttttactaaaa |
251 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
56461609 |
tgt-gaacttaacttccatatcttgaacacttttactaaaa |
56461570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 13 - 281
Target Start/End: Original strand, 16957950 - 16958216
Alignment:
| Q |
13 |
tatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatga |
112 |
Q |
| |
|
|||| |||||| |||||||| |||||| || || ||||||| || |||||||||||||||||||| ||||||||||||||||| || ||||||| ||| |
|
|
| T |
16957950 |
tatctaggcacgccttacgacaaacaaggcacacctcatcaatagaaaatagtggaatcataaggc-atatctaaggatagtacagtaatccactggtga |
16958048 |
T |
|
| Q |
113 |
catatgctgacataacccatccatcaggatagctacaagaaaatcatgagaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgattatg |
212 |
Q |
| |
|
||||||||| | | ||||||| || |||||||||| ||||||||| ||| ||||| ||||| | || ||||||||| || ||||||||| || ||||| |
|
|
| T |
16958049 |
catatgctggccttacccatcaatgaggatagctagaagaaaatctagagcatgtgctgcttgcaaatatcctaaaattgccttctgtctcgtagttatg |
16958148 |
T |
|
| Q |
213 |
tcaaacttaacttccatatcttgaacacttttactaaaatggacaatcgtcaaaacatgttatgcttta |
281 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||| ||| | || ||| ||||||||||| ||||||| |
|
|
| T |
16958149 |
tcaaacttaacttccatatcgtgagcacttttactcaaaagagcactcg-caaaacatgttgtgcttta |
16958216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 110 - 251
Target Start/End: Original strand, 25707013 - 25707155
Alignment:
| Q |
110 |
tgacatatgctgacataacccatccatcagga-tagctacaagaaaatcatgagaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgat |
208 |
Q |
| |
|
|||||||||||||| ||||||||| ||| || |||||| ||||||||| | || ||||| ||||| | |||||||||||| | |||||||||||| || |
|
|
| T |
25707013 |
tgacatatgctgacctaacccatcaatcgggtgtagctagaagaaaatcctcagcatgtgctgcttgcaaacatcctaaaacttccttctgtctagtaat |
25707112 |
T |
|
| Q |
209 |
tatgtcaaacttaacttccatatcttgaacacttttactaaaa |
251 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
25707113 |
tatgtcaaacttaacttccatattttaaacacttttactaaaa |
25707155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 34 - 267
Target Start/End: Complemental strand, 48505870 - 48505637
Alignment:
| Q |
34 |
aaacaaaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatgacatatgctgacataacccatc |
133 |
Q |
| |
|
||||| |||| |||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||| ||| ||||||||| |
|
|
| T |
48505870 |
aaacagaacacacatcatcaatatgaaatagtggaatcataaggcgatatctaaggataatacgatactccaccgataacatatgttgatctaacccatc |
48505771 |
T |
|
| Q |
134 |
catcaggatagctacaagaaaatcatgagaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgattatgtcaaacttaacttccatatct |
233 |
Q |
| |
|
|| ||||||||| || |||||| | | |||||||| || | |||| | |||| | || | |||||| | || ||||||||||||| ||||||| |
|
|
| T |
48505770 |
aatatggatagctagaaaaaaatcctaatcatgtgttgtttgcaaacaccttaaatttattttatatctagtagtcatatcaaacttaactttcatatct |
48505671 |
T |
|
| Q |
234 |
tgaacacttttactaaaatggacaatcgtcaaaa |
267 |
Q |
| |
|
| || | ||||||||||| | ||| ||||||||| |
|
|
| T |
48505670 |
taaatatttttactaaaaagaacattcgtcaaaa |
48505637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 56 - 162
Target Start/End: Original strand, 32335309 - 32335414
Alignment:
| Q |
56 |
aggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatgacatatgctgacataacccatccatcaggatagctacaagaaaa |
155 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||| |||||| | ||||||||| |||||||||| |||| ||| ||||| || ||||||||| ||||||| |
|
|
| T |
32335309 |
aggaaatattggaatcatacggcgatatctaag-atagtatggtactccactaatgacatatgatgacctaatccatcaatagggatagctagaagaaaa |
32335407 |
T |
|
| Q |
156 |
tcatgag |
162 |
Q |
| |
|
||||||| |
|
|
| T |
32335408 |
tcatgag |
32335414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 23809195 - 23809154
Alignment:
| Q |
210 |
atgtcaaacttaacttccatatcttgaacacttttactaaaa |
251 |
Q |
| |
|
|||||||| || |||||||||||||||||| ||||||||||| |
|
|
| T |
23809195 |
atgtcaaatttcacttccatatcttgaacatttttactaaaa |
23809154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 48 - 251
Target Start/End: Original strand, 29862246 - 29862450
Alignment:
| Q |
48 |
tcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatgacatatgctgacat-aacccatccatcaggatagct |
146 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||| | |||||||| ||| ||||||| |
|
|
| T |
29862246 |
tcatcaataggaaataatggaatcataaggcgatatctaaggatagtacgctacttcactggtgacatatgctgactttaacccatcaatcgagatagct |
29862345 |
T |
|
| Q |
147 |
acaagaaaatcatgagaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgattatgtcaaacttaacttccatatcttgaacacttttac |
246 |
Q |
| |
|
| |||||||||||||| |||||||| || | |||||||||||| || || |||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29862346 |
agaagaaaatcatgagcatgtgttgtttgcaaacatcctaaaactgcattatgtcgagtgatcatgtcaaacttaacttccatatcttgaacacttttac |
29862445 |
T |
|
| Q |
247 |
taaaa |
251 |
Q |
| |
|
||||| |
|
|
| T |
29862446 |
taaaa |
29862450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 13 - 284
Target Start/End: Original strand, 53786122 - 53786388
Alignment:
| Q |
13 |
tatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatga |
112 |
Q |
| |
|
||||||||||| |||||||| |||||| | || ||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
53786122 |
tatccaggcacgccttacgacaaacaaggtacacctcatcaataggaaatagttgaatcataaggcgatatctaaggataatacgatactccactggtga |
53786221 |
T |
|
| Q |
113 |
catatgctgacataacccatccatcaggatagctacaagaaaatcatgagaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgattatg |
212 |
Q |
| |
|
||||||||||| ||||||||| ||||| ||||||| ||||||||| |||| ||||| ||||| | ||||||| |||| || ||| ||||| ||| | ||| |
|
|
| T |
53786222 |
catatgctgacctaacccatcaatcagaatagctagaagaaaatcttgagcatgtggtgcttgcaaacatccaaaaattgccttatgtctcgtggtcatg |
53786321 |
T |
|
| Q |
213 |
tcaaacttaacttccatatcttgaacacttttactaaaatggacaatcgtcaaaacatgttatgctttagga |
284 |
Q |
| |
|
||| ||||||||| ||||||||||||||||||||| | || ||| ||||||||||| || ||||||| |
|
|
| T |
53786322 |
tca-----aacttccatgtcttgaacacttttactaaaaagagcactcgccaaaacatgttgtgttttagga |
53786388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 61 - 284
Target Start/End: Original strand, 49018414 - 49018637
Alignment:
| Q |
61 |
atagtggaatcataaggcgatatctaaggatagtacgatactccactgatgacatatgctgacataacccatccatcaggatagctacaagaaaatcatg |
160 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||||||||| |||||| |||||| ||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
49018414 |
atagtggaatcataaggcgatatctaatgatagttcgatactccacttgtgacatgcgctgacctaacccatcaatcaggatagctagaagaaaatcatg |
49018513 |
T |
|
| Q |
161 |
agaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgattatgtcaaacttaacttccatatcttgaacacttttactaaaatggacaatc |
260 |
Q |
| |
|
|| |||| ||||| | |||||||||||| || ||| ||||| ||| | | |||||||||||||| ||||||||||| ||||||| ||||| | || || |
|
|
| T |
49018514 |
agcatgtactgcttgcaaacatcctaaaattgtcttttgtctcgtggtcacgtcaaacttaacttacatatcttgaaaacttttattaaaaagagcactc |
49018613 |
T |
|
| Q |
261 |
gtcaaaacatgttatgctttagga |
284 |
Q |
| |
|
| ||||||||||| |||||||||| |
|
|
| T |
49018614 |
gccaaaacatgttgtgctttagga |
49018637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 17 - 330
Target Start/End: Complemental strand, 52411591 - 52411281
Alignment:
| Q |
17 |
caggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatgacata |
116 |
Q |
| |
|
||||||| |||||||| ||||| ||| || | ||||| |||||| | |||||||| |||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
52411591 |
caggcacgccttacgacaaacaggacacaccttatcaataggaaacaatggaatcacaaggcgatatctaaggatagcacgatactccactcgtgacata |
52411492 |
T |
|
| Q |
117 |
tgctgacataacccatccatcaggatagctacaagaaaatcatgagaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgattatgtcaa |
216 |
Q |
| |
|
||||||| |||| |||| ||| ||||||||| |||||||||||||| ||| | ||| | | |||| ||||||| || ||| |||||| || | ||| ||| |
|
|
| T |
52411491 |
tgctgacttaactcatcaatcgggatagctagaagaaaatcatgagcatgcgctgcatgcaaacaccctaaaattgtcttttgtctaatgttcatgccaa |
52411392 |
T |
|
| Q |
217 |
acttaacttccatatcttgaacacttttactaaaatggacaatcgtcaaaacatgttatgctttaggaagaacgttatccttctaagtaaaactgctagt |
316 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| | || ||| |||||||| |||||||||||| ||| | ||||| ||||||||||| || | |
|
|
| T |
52411391 |
acttaacttccatatctttaacacttttactaaaaagagcactcgctaaaacatg---tgctttaggaaggacggtgtccttgcaagtaaaactgataat |
52411295 |
T |
|
| Q |
317 |
atcaaaatatgaaa |
330 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
52411294 |
gtcaaaatttgaaa |
52411281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 48 - 247
Target Start/End: Original strand, 35236577 - 35236776
Alignment:
| Q |
48 |
tcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatgacatatgctgacataacccatccatcaggatagcta |
147 |
Q |
| |
|
||||||| |||||||| | ||||||| ||||||||||||||||||| | |||||||||| |||||||||||||| ||| ||||| | ||||| |||| |
|
|
| T |
35236577 |
tcatcaataggaaataataacatcataaagcgatatctaaggatagtatggtactccactggtgacatatgctgacctaatccatcaaccaggacagctt |
35236676 |
T |
|
| Q |
148 |
caagaaaatcatgagaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgattatgtcaaacttaacttccatatcttgaacacttttact |
247 |
Q |
| |
|
||||||||| ||| || | | ||| | ||||||| |||| | ||||||||||||||| ||||||||||||||| ||||||||||| | ||||||| |
|
|
| T |
35236677 |
gaagaaaatcttgatcatatactacttgcaaacatccaaaaaccgtcttctgtctagtgatcctgtcaaacttaactttcatatcttgaagaattttact |
35236776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 13 - 121
Target Start/End: Complemental strand, 7501831 - 7501724
Alignment:
| Q |
13 |
tatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatga |
112 |
Q |
| |
|
||||||| ||| | |||||| ||||||| || || ||||||| | ||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7501831 |
tatccagacacgcattacgacaaacaaa-cacacctcatcaatatgaaatagaggaattataaggcgatatctaaggatagtacggtactccactgatga |
7501733 |
T |
|
| Q |
113 |
catatgctg |
121 |
Q |
| |
|
||||||||| |
|
|
| T |
7501732 |
catatgctg |
7501724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 52741185 - 52741125
Alignment:
| Q |
48 |
tcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactg |
108 |
Q |
| |
|
||||||| | ||||||||||||||||||| | ||||||||||||||| |||||||||||| |
|
|
| T |
52741185 |
tcatcaatatgaaatagtggaatcataagatggtatctaaggatagtatgatactccactg |
52741125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 204 - 273
Target Start/End: Complemental strand, 48228577 - 48228509
Alignment:
| Q |
204 |
gtgattatgtcaaacttaacttccatatcttgaacacttttactaaaatggacaatcgtcaaaacatgtt |
273 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||| ||||| | |||||||| ||| ||||||||||| |
|
|
| T |
48228577 |
gtgattatgtcaaacttcacttctatatcttgaacattttta-ttcaatggacactcgccaaaacatgtt |
48228509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 7501691 - 7501641
Alignment:
| Q |
201 |
ctagtgattatgtcaaacttaacttccatatcttgaacacttttactaaaa |
251 |
Q |
| |
|
|||||| | |||| ||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
7501691 |
ctagtggtcatgtgaaacttaactttcatatcttaaacacttttactaaaa |
7501641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 13 - 284
Target Start/End: Original strand, 24125442 - 24125712
Alignment:
| Q |
13 |
tatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatga |
112 |
Q |
| |
|
||||||| ||| |||||||| ||||| || || ||||||| |||||||||||||||||||| ||||||| ||||||||||||| |||||||||| ||| |
|
|
| T |
24125442 |
tatccagacacgccttacgacaaacagggcacacctcatcaataggaaatagtggaatcataatgcgatatttaaggatagtacggtactccactg-tga |
24125540 |
T |
|
| Q |
113 |
catatgctgacataacccatccatcaggatagctacaagaaaatcatgagaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgattatg |
212 |
Q |
| |
|
||||| ||||| ||||||||| ||| ||||||||| ||||||||| |||| ||||| ||||| | ||||| |||| | || || || ||| || | ||| |
|
|
| T |
24125541 |
catatcctgacctaacccatcaatcgggatagctagaagaaaatcctgagcatgtgatgcttgcaaacattctaatattgcctcctatctcgttgtcatg |
24125640 |
T |
|
| Q |
213 |
tcaaacttaacttccatatcttgaacacttttactaaaatggacaatcgtcaaaacatgttatgctttagga |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | || || |||||||||||||||||||||| |
|
|
| T |
24125641 |
tcaaacttaacttccatatcttgaacacttttactaaaaagagcactcaccaaaacatgttatgctttagga |
24125712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 48 - 281
Target Start/End: Original strand, 500676 - 500909
Alignment:
| Q |
48 |
tcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatgacatatgctgacataacccatccatcaggatagcta |
147 |
Q |
| |
|
||||||| |||||||| ||||||| |||||| |||||||||||||||||| ||||||| || |||||||||||||| |||| |||| |||||||| |||| |
|
|
| T |
500676 |
tcatcaataggaaatattggaatcgtaaggcaatatctaaggatagtacggtactccattggtgacatatgctgacctaactcatcaatcaggattgcta |
500775 |
T |
|
| Q |
148 |
caagaaaatcatgagaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgattatgtcaaacttaacttccatatcttgaacacttttact |
247 |
Q |
| |
|
|||||||||||||| || || ||||| | || ||||||||| || ||||| | | ||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
500776 |
gaagaaaatcatgagcatatgctgcttgcaaatatcctaaaattgtcttctttttcgtgtttatgttaaacttaacttccatatcttgaacacttttact |
500875 |
T |
|
| Q |
248 |
aaaatggacaatcgtcaaaacatgttatgcttta |
281 |
Q |
| |
|
|||| || ||| ||||||||||| ||||||| |
|
|
| T |
500876 |
aaaaaaagcactcgccaaaacatgttgtgcttta |
500909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 48 - 284
Target Start/End: Original strand, 37517538 - 37517774
Alignment:
| Q |
48 |
tcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatgacatatgctgacataacccatccatcaggatagcta |
147 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||| |||| ||||||||| ||| ||||| || |
|
|
| T |
37517538 |
tcatcaataggaaatagtggaatcataaggcgatatctaaggatattatgatactccactggtgacatatgttgacctaacccatcaatcgggatactta |
37517637 |
T |
|
| Q |
148 |
caagaaaatcatgagaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgattatgtcaaacttaacttccatatcttgaacacttttact |
247 |
Q |
| |
|
|||||||||||||| ||||| ||||| | ||||||| |||| | ||||| ||| ||| | |||||||||||||||| |||||| |||| |||||| || |
|
|
| T |
37517638 |
gaagaaaatcatgagcatgtgctgcttgcaaacatccaaaaattatcttctatctcgtggtcatgtcaaacttaactttcatatcatgaaaactttttct |
37517737 |
T |
|
| Q |
248 |
aaaatggacaatcgtcaaaacatgttatgctttagga |
284 |
Q |
| |
|
|||| | ||| ||| |||||||||| |||||||||| |
|
|
| T |
37517738 |
aaaaagaacactcgccaaaacatgtcgtgctttagga |
37517774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 48 - 286
Target Start/End: Complemental strand, 25021462 - 25021222
Alignment:
| Q |
48 |
tcatcaacaggaaatagtggaatcataaggcgatatctaaggata--gtacgatactccactgatgacatatgctgacataacccatccatcaggatagc |
145 |
Q |
| |
|
||||||| | |||||||||||||||| |||||||||||||||||| |||| ||||| ||||| |||||| ||||||| ||||||||| || ||||| | |
|
|
| T |
25021462 |
tcatcaatatgaaatagtggaatcatgaggcgatatctaaggatatagtactatacttcactggtgacatgtgctgacttaacccatcaatatggataac |
25021363 |
T |
|
| Q |
146 |
tacaagaaaatcatgagaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgattatgtcaaacttaacttccatatcttgaacactttta |
245 |
Q |
| |
|
|| ||||||||| |||| ||||| ||||| | |||| |||||| | ||| ||||||||| | || |||||||||||||||||||||||||||| |||| |
|
|
| T |
25021362 |
tagaagaaaatcttgagcatgtgctgcttgcaaacaccctaaatccgccttatgtctagtggtcatatcaaacttaacttccatatcttgaacaccttta |
25021263 |
T |
|
| Q |
246 |
ctaaaatggacaatcgtcaaaacatgttatgctttaggaag |
286 |
Q |
| |
|
||||| || || ||| ||||||||||| |||||||||||| |
|
|
| T |
25021262 |
ataaaaagggcactcgccaaaacatgttgtgctttaggaag |
25021222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 43 - 170
Target Start/End: Complemental strand, 4007106 - 4006976
Alignment:
| Q |
43 |
atacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacga---tactccactgatgacatatgctgacataacccatccatcag |
139 |
Q |
| |
|
|||| ||||||| || |||||||||||||||||| ||||||||||||||| |||| | ||||||| ||||||||||||||| ||||||||| ||||| |
|
|
| T |
4007106 |
atacctcatcaatagaaaatagtggaatcataagacgatatctaaggataatacggcggtcctccactaatgacatatgctgacttaacccatcaatcag |
4007007 |
T |
|
| Q |
140 |
gatagctacaagaaaatcatgagaatgtgtt |
170 |
Q |
| |
|
|||||||| |||||||||||||| ||||||| |
|
|
| T |
4007006 |
gatagctagaagaaaatcatgagcatgtgtt |
4006976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 13 - 174
Target Start/End: Original strand, 39435081 - 39435242
Alignment:
| Q |
13 |
tatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatga |
112 |
Q |
| |
|
||||||| ||| |||||||| ||||| || || ||||||| |||||| |||||||||||||| ||||||| |||||||||||| ||||| ||| ||| |
|
|
| T |
39435081 |
tatccagacacgccttacgacaaacagggcacacctcatcaataggaaaaagtggaatcataagacgatatcgaaggatagtacggtactcaactagtga |
39435180 |
T |
|
| Q |
113 |
catatgctgacataacccatccatcaggatagctacaagaaaatcatgagaatgtgttgctt |
174 |
Q |
| |
|
||||||||||| ||||||||| || ||||||||| ||||||||| |||| ||||| ||||| |
|
|
| T |
39435181 |
catatgctgacctaacccatcaattgggatagctagaagaaaatcttgagcatgtggtgctt |
39435242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 48 - 226
Target Start/End: Complemental strand, 42921788 - 42921610
Alignment:
| Q |
48 |
tcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatgacatatgctgacataacccatccatcaggatagcta |
147 |
Q |
| |
|
||||||| | |||||| |||||||||||| ||||||| || |||||| ||||||||||| |||| |||||||||| ||||||| | || |||||||| |
|
|
| T |
42921788 |
tcatcaataagaaataatggaatcataagacgatatcgaataatagtatgatactccacttatgatatatgctgacctaacccaccattcgagatagcta |
42921689 |
T |
|
| Q |
148 |
caagaaaatcatgagaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgattatgtcaaacttaacttc |
226 |
Q |
| |
|
||||||||| | || ||||||||||| | |||| | ||||| | ||||| ||||||| | |||||||| ||||||| |
|
|
| T |
42921688 |
gaagaaaatcctaagcatgtgttgcttgcaaacaccttaaaattaccttctatctagtggtcatgtcaaatctaacttc |
42921610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 250
Target Start/End: Original strand, 10189992 - 10190195
Alignment:
| Q |
48 |
tcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatgacatatgctgacataacccatccatcaggatagcta |
147 |
Q |
| |
|
||||||| | |||||| | |||||||||| | |||||| |||| ||||||||||||||||||| ||||||| || |||| |||| | ||||||| || |
|
|
| T |
10189992 |
tcatcaatatgaaataatagaatcataagacaatatctgcagatattacgatactccactgatgatatatgcttacctaactcatcaacaaggatagtta |
10190091 |
T |
|
| Q |
148 |
caagaaaatcatgagaatgtgttgctttcgaacatcctaaaagtgact-tctgtctagtgattatgtcaaacttaacttccatatcttgaacacttttac |
246 |
Q |
| |
|
||||||||||||| ||||||| ||| | | || ||||||| ||| | || || || | ||||||||||||||||| ||||||| |||| |||| | |
|
|
| T |
10190092 |
gaagaaaatcatgaacatgtgttacttgcaagcaccctaaaactgattagacgtttaatggtcatgtcaaacttaacttctatatcttaaacaattttcc |
10190191 |
T |
|
| Q |
247 |
taaa |
250 |
Q |
| |
|
|||| |
|
|
| T |
10190192 |
taaa |
10190195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 273
Target Start/End: Original strand, 40840178 - 40840227
Alignment:
| Q |
224 |
ttccatatcttgaacacttttactaaaatggacaatcgtcaaaacatgtt |
273 |
Q |
| |
|
||||||||| |||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
40840178 |
ttccatatcctgaacacttttactaaaaatgacactcgtcaaaacatgtt |
40840227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 13 - 324
Target Start/End: Original strand, 5827668 - 5827979
Alignment:
| Q |
13 |
tatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatga |
112 |
Q |
| |
|
||||||| ||| |||||||| ||||| || || ||||||| | ||||||||||||||||||| ||||||| |||||||||||| |||||||||| ||| |
|
|
| T |
5827668 |
tatccagacacgccttacgacaaacagggcacacctcatcaataagaaatagtggaatcataagacgatatcgaaggatagtacggtactccactggtga |
5827767 |
T |
|
| Q |
113 |
catatgctgacataacccatccatcaggatagctacaagaaaatcatgagaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgattatg |
212 |
Q |
| |
|
||||||||||| ||||||||| || ||||||||| |||||||| |||| ||||| ||||| | |||||||||||| || ||||||||||||| ||| |
|
|
| T |
5827768 |
catatgctgacctaacccatcaattgggatagctagaagaaaattttgagcatgtgctgcttgcaaacatcctaaaactgccttctgtctagtggccatg |
5827867 |
T |
|
| Q |
213 |
tcaaacttaacttccatatcttgaacacttttactaaaatggacaatcgtcaaaacatgttatgctttaggaagaacgttatccttctaagtaaaactgc |
312 |
Q |
| |
|
|||||||||||||| ||||||||| || ||||| ||| | | || ||| ||||||||||| |||||||||| | ||| | ||||| |||||||||| | |
|
|
| T |
5827868 |
tcaaacttaacttctatatcttgaccaattttattaagaagagcactcgccaaaacatgttgtgctttaggagggacggtgtccttgcaagtaaaactac |
5827967 |
T |
|
| Q |
313 |
tagtatcaaaat |
324 |
Q |
| |
|
|| | ||||||| |
|
|
| T |
5827968 |
taatgtcaaaat |
5827979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 56 - 251
Target Start/End: Original strand, 32585604 - 32585799
Alignment:
| Q |
56 |
aggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatgacatatgctgacataacccatccatcaggatagctacaagaaaa |
155 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||| |||| || || |||||||||||||||||| ||||| ||||||||||| | ||||||| |
|
|
| T |
32585604 |
aggaaatagtggaatcataagacgaaatctaaggatagtacggtacttcattggtgacatatgctgacataatccatcaatcaggatagccagaagaaaa |
32585703 |
T |
|
| Q |
156 |
tcatgagaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgattatgtcaaacttaacttccatatcttgaacacttttactaaaa |
251 |
Q |
| |
|
|||||||||| ||||| || | ||||||||||| ||| ||||||||||||| | |||||||||||||||| ||||| || |||| ||||||||||| |
|
|
| T |
32585704 |
tcatgagaatatgttgattgcaaacatcctaaaggtgtcttctgtctagtggtcatgtcaaacttaactttcatatattaaacaattttactaaaa |
32585799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 25 - 251
Target Start/End: Original strand, 47679550 - 47679773
Alignment:
| Q |
25 |
ccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatgacatatgctgaca |
124 |
Q |
| |
|
|||||||| ||||| | || || || |||| || ||||||||||||||| |||| ||||||| |||||||||| ||||||||||| |||||| ||||| |
|
|
| T |
47679550 |
ccttacgacaaacagagcacacctcgtcaatagcaaatagtggaatcatgaggcaatatctatggatagtacgttactccactga---catatgttgaca |
47679646 |
T |
|
| Q |
125 |
taacccatccatcaggatagctacaagaaaatcatgagaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgattatgtcaaacttaact |
224 |
Q |
| |
|
|||| |||| ||||||||||||| ||||||||| |||| ||||| | ||| | |||||||||||| || ||||||||||||| | ||||||||||||||| |
|
|
| T |
47679647 |
taactcatcaatcaggatagctagaagaaaatcctgagcatgtgctacttgcaaacatcctaaaactgtcttctgtctagtggtcatgtcaaacttaact |
47679746 |
T |
|
| Q |
225 |
tccatatcttgaacacttttactaaaa |
251 |
Q |
| |
|
||||||||||||||| ||||||||||| |
|
|
| T |
47679747 |
tccatatcttgaacaattttactaaaa |
47679773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 13 - 147
Target Start/End: Original strand, 4501672 - 4501806
Alignment:
| Q |
13 |
tatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatga |
112 |
Q |
| |
|
||||||||||| |||||||| ||||| ||| || ||||||| || ||||| |||||||||||| |||||||||||||||||||||||||||| || ||| |
|
|
| T |
4501672 |
tatccaggcacgccttacgacaaacatgacacacctcatcaatagaaaataatggaatcataagacgatatctaaggatagtacgatactccattggtga |
4501771 |
T |
|
| Q |
113 |
catatgctgacataacccatccatcaggatagcta |
147 |
Q |
| |
|
||||||||||| |||| ||| ||| ||||||||| |
|
|
| T |
4501772 |
catatgctgacctaacatatcaatcgggatagcta |
4501806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 58 - 162
Target Start/End: Original strand, 24528049 - 24528153
Alignment:
| Q |
58 |
gaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatgacatatgctgacataacccatccatcaggatagctacaagaaaatc |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||| || | ||||||||| |||| |||||||| ||||||||| |
|
|
| T |
24528049 |
gaaatagtggaatcataaggcgatatctaatgatagtatgatactccactggtgacatatgttgtcctaacccatcaatcatgatagctagaagaaaatc |
24528148 |
T |
|
| Q |
158 |
atgag |
162 |
Q |
| |
|
|||| |
|
|
| T |
24528149 |
ctgag |
24528153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 10905562 - 10905607
Alignment:
| Q |
58 |
gaaatagtggaatcataaggcgatatctaaggatagtacgatactc |
103 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10905562 |
gaaatagtggaatcataagatgatatctaaggatagtacgatactc |
10905607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 123
Target Start/End: Original strand, 4175680 - 4175743
Alignment:
| Q |
60 |
aatagtggaatcataaggcgatatctaaggatagtacgatactccactgatgacatatgctgac |
123 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| |||| |
|
|
| T |
4175680 |
aatagtggaatcataaggcactatctaaggatagtacggtactccacatgtgacatatgttgac |
4175743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 284
Target Start/End: Original strand, 19277780 - 19277854
Alignment:
| Q |
210 |
atgtcaaacttaacttccatatcttgaacacttttactaaaatggacaatcgtcaaaacatgttatgctttagga |
284 |
Q |
| |
|
||||||||||| ||||||||||| || ||||||||||||||| | || || ||||||||||| |||||||||| |
|
|
| T |
19277780 |
atgtcaaacttgacttccatatcctggacacttttactaaaaagagcactcaccaaaacatgttgtgctttagga |
19277854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 194 - 281
Target Start/End: Original strand, 4175775 - 4175860
Alignment:
| Q |
194 |
cttctgtctagtgattatgtcaaacttaacttccatatcttgaacacttttactaaaatggacaatcgtcaaaacatgttatgcttta |
281 |
Q |
| |
|
||||| ||||||| | |||||||| ||| |||||||||||||||||||||||| |||| |||| ||| |||| |||||| ||||||| |
|
|
| T |
4175775 |
cttctatctagtggtcatgtcaaa-ttagcttccatatcttgaacacttttac-aaaaaagacactcgccaaagcatgttgtgcttta |
4175860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 48 - 284
Target Start/End: Original strand, 20170 - 20410
Alignment:
| Q |
48 |
tcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatgacatatgctgacataacccatccatcaggatagcta |
147 |
Q |
| |
|
||||||| |||||||| || |||||||||| ||||||||||||||| || |||||||| || ||||||||| |||| ||||||||| || ||||||||| |
|
|
| T |
20170 |
tcatcaataggaaataatgtaatcataaggtgatatctaaggatagcaccatactccaatgttgacatatgttgacctaacccatcaattgggatagcta |
20269 |
T |
|
| Q |
148 |
caagaaaatcatgagaatg----tgttgctttcgaacatcctaaaagtgacttctgtctagtgattatgtcaaacttaacttccatatcttgaacacttt |
243 |
Q |
| |
|
|||||||||| |||| ||| |||||| | | |||| |||||| || ||||||||||||| | |||||||||||||||| ||||||||||||||||| |
|
|
| T |
20270 |
caagaaaatcctgagcatgcatgtgttgcatgcaaacactctaaaactgtcttctgtctagtggtcatgtcaaacttaactttcatatcttgaacacttt |
20369 |
T |
|
| Q |
244 |
tactaaaatggacaatcgtcaaaacatgttatgctttagga |
284 |
Q |
| |
|
|| ||||| || || ||| ||||||||||| |||||||||| |
|
|
| T |
20370 |
tattaaaaagggcattcgccaaaacatgttgtgctttagga |
20410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 15)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 48 - 311
Target Start/End: Original strand, 34304946 - 34305209
Alignment:
| Q |
48 |
tcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatgacatatgctgacataacccatccatcaggatagcta |
147 |
Q |
| |
|
||||||| | |||||| |||||||||||| | |||| |||||||||||| |||||||||| |||||||||||||||||||||||| || ||||| ||| |
|
|
| T |
34304946 |
tcatcaatatgaaataatggaatcataagacagtatcgaaggatagtacggtactccactggtgacatatgctgacataacccatcaattgggataccta |
34305045 |
T |
|
| Q |
148 |
caagaaaatcatgagaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgattatgtcaaacttaacttccatatcttgaacacttttact |
247 |
Q |
| |
|
|| |||||| |||| ||||| ||||| | ||||||| |||| | ||||||||| | | | |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34305046 |
gaataaaatcttgagcatgtgctgcttccaaacatccaaaaacttccttctgtcttgcggtcatgtcaaacttaacttccatatcttgaacaattttact |
34305145 |
T |
|
| Q |
248 |
aaaatggacaatcgtcaaaacatgttatgctttaggaagaacgttatccttctaagtaaaactg |
311 |
Q |
| |
|
|||| | || ||| ||||||||||| |||||||||| | ||| | ||||| ||||||||||| |
|
|
| T |
34305146 |
aaaaagagcactcgccaaaacatgttgtgctttaggagggacggtgtccttgcaagtaaaactg |
34305209 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 59 - 236
Target Start/End: Complemental strand, 29337733 - 29337556
Alignment:
| Q |
59 |
aaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatgacatatgctgacataacccatccatcaggatagctacaagaaaatca |
158 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| || |||||| |||| || |||||||||| ||||||||| ||||||||||||| ||||||||| |
|
|
| T |
29337733 |
aaatagaggaatcataaggcgatatctaaggataatatgatacttcacttgcgaaatatgctgacctaacccatcaatcaggatagctagaagaaaatcc |
29337634 |
T |
|
| Q |
159 |
tgagaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgattatgtcaaacttaacttccatatcttga |
236 |
Q |
| |
|
|||| ||||| ||||| | |||| || |||| | ||||||||||| | | ||||||||||||||||||||||||||| |
|
|
| T |
29337633 |
tgagcatgtgctgcttgcaaacaccccaaaacggccttctgtctagaggtcatgtcaaacttaacttccatatcttga |
29337556 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 13 - 143
Target Start/End: Complemental strand, 45362 - 45232
Alignment:
| Q |
13 |
tatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatga |
112 |
Q |
| |
|
|||| ||||||||||||||| ||||| || || ||||||| |||||||| ||||||||||||| ||||||||||||||||| |||||||||| ||||| |
|
|
| T |
45362 |
tatcaaggcacaccttacgacaaacagggcacacctcatcaataggaaatattggaatcataaggtgatatctaaggatagtatgatactccacagatga |
45263 |
T |
|
| Q |
113 |
catatgctgacataacccatccatcaggata |
143 |
Q |
| |
|
||||||||||| ||||||||| ||| ||||| |
|
|
| T |
45262 |
catatgctgacctaacccatcaatcgggata |
45232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 13 - 284
Target Start/End: Original strand, 32120343 - 32120613
Alignment:
| Q |
13 |
tatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatga |
112 |
Q |
| |
|
||||||| |||||||||||| ||| | || || | ||||| |||||||| ||||||||||||||||||| ||| ||| ||| | |||||| || | | |
|
|
| T |
32120343 |
tatccagacacaccttacgacaaatagggcacacctgatcaataggaaatattggaatcataaggcgatatataaagattgtatggcactccattggtaa |
32120442 |
T |
|
| Q |
113 |
catatgctgacataacccatccatcaggatagctacaagaaaatcatgagaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgattatg |
212 |
Q |
| |
|
||| |||||| ||||| ||| ||| |||| | | |||||||||||||| |||| | ||| | ||||||||| || || ||||||||| ||| | ||| |
|
|
| T |
32120443 |
catttgctgaactaacc-atcaatcgagataacaagaagaaaatcatgagcatgtcctacttgcaaacatcctataattgtcttctgtcttgtggtcatg |
32120541 |
T |
|
| Q |
213 |
tcaaacttaacttccatatcttgaacacttttactaaaatggacaatcgtcaaaacatgttatgctttagga |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| | || ||| ||||||||||| |||||||||| |
|
|
| T |
32120542 |
tcaaacttaacttccatatcttgaacactttacctaaaaagagcactcgccaaaacatgttgtgctttagga |
32120613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 4206289 - 4206169
Alignment:
| Q |
13 |
tatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatga |
112 |
Q |
| |
|
||||||||||| |||||||| ||||| || | ||||||| |||||||||||||||| |||||||| |||||||||||||||| |||||||||| ||| |
|
|
| T |
4206289 |
tatccaggcacgccttacgacaaacagggcacgcctcatcaataggaaatagtggaatcgtaaggcgagatctaaggatagtacggtactccactggtga |
4206190 |
T |
|
| Q |
113 |
catatgctgacataacccatc |
133 |
Q |
| |
|
||||||||||| ||||||||| |
|
|
| T |
4206189 |
catatgctgacctaacccatc |
4206169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 194 - 314
Target Start/End: Original strand, 32116230 - 32116350
Alignment:
| Q |
194 |
cttctgtctagtgattatgtcaaacttaacttccatatcttgaacacttttactaaaatggacaatcgtcaaaacatgttatgctttaggaagaacgtta |
293 |
Q |
| |
|
||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||| |||||||||||| ||||| |
|
|
| T |
32116230 |
cttctgtctcgtggttgtgtcaaacttaacttccatatcttgaacacttttactaaaaagatcactcgtcaaaacatgttgtgctttaggaaggacgttg |
32116329 |
T |
|
| Q |
294 |
tccttctaagtaaaactgcta |
314 |
Q |
| |
|
|| || ||||||||||||| |
|
|
| T |
32116330 |
tctttgctagtaaaactgcta |
32116350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 48 - 251
Target Start/End: Complemental strand, 8374956 - 8374753
Alignment:
| Q |
48 |
tcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatgacatatgctgacataacccatccatcaggatagcta |
147 |
Q |
| |
|
||||||| || || || ||||||||||| ||||||| | ||||||||||||||||| | || ||||||||| || | ||||||||| || |||||||||| |
|
|
| T |
8374956 |
tcatcaatagaaagtaatggaatcataatgcgatatatgaggatagtacgatactctattggtgacatatgttggcttaacccatcaataaggatagcta |
8374857 |
T |
|
| Q |
148 |
caagaaaatcatgagaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgattatgtcaaacttaacttccatatcttgaacacttttact |
247 |
Q |
| |
|
|||||||| |||| |||||||| || | |||| | |||| | ||||||| ||| | |||||||| || ||||||||||| |||||||||||||| |
|
|
| T |
8374856 |
gaagaaaatattgagcatgtgttgtttgcaaacaccgaaaaactactttctgtcgcgtggtcatgtcaaatttcacttccatatcctgaacacttttact |
8374757 |
T |
|
| Q |
248 |
aaaa |
251 |
Q |
| |
|
|||| |
|
|
| T |
8374756 |
aaaa |
8374753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 194 - 314
Target Start/End: Original strand, 10402324 - 10402443
Alignment:
| Q |
194 |
cttctgtctagtgattatgtcaaacttaacttccatatcttgaacacttttactaaaatggacaatcgtcaaaacatgttatgctttaggaagaacgtta |
293 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||| |||||||||| | || ||||||||||||||| |||||||||| | ||| | |
|
|
| T |
10402324 |
cttctgtctagtggtcatgtcaaacttaacttccatatcttgaac-gatttactaaaaagagcactcgtcaaaacatgttgtgctttaggagggacgatg |
10402422 |
T |
|
| Q |
294 |
tccttctaagtaaaactgcta |
314 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
10402423 |
tccttacaagtaaaactgcta |
10402443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 32116103 - 32116194
Alignment:
| Q |
13 |
tatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactcc |
104 |
Q |
| |
|
|||||||||||||||||||| ||||| || |||||||||| |||||||||| |||||||||| | ||||||| |||||||| | |||||| |
|
|
| T |
32116103 |
tatccaggcacaccttacgacaaacagggcacacatcatcaataggaaatagttgaatcataagacaatatctagggatagtatggtactcc |
32116194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 284
Target Start/End: Complemental strand, 45186 - 45112
Alignment:
| Q |
210 |
atgtcaaacttaacttccatatcttgaacacttttactaaaatggacaatcgtcaaaacatgttatgctttagga |
284 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| | || ||| ||||||||||| |||||||||| |
|
|
| T |
45186 |
atgtcaaacttaacttccatattctgaacacttttactaaaaagagcactcgccaaaacatgttgtgctttagga |
45112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 287
Target Start/End: Original strand, 22986368 - 22986607
Alignment:
| Q |
48 |
tcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatgacatatgctgacataacccatccatcaggatagcta |
147 |
Q |
| |
|
||||||| |||| || ||||||||| ||||||||||| ||||| ||| ||||||| | ||||| ||||||||| ||||| ||||||| |||| |||| |
|
|
| T |
22986368 |
tcatcaataggatgtaatggaatcatgaggcgatatctgaggattgtatgatactctagggatgaaatatgctgatataactcatccatagggatggcta |
22986467 |
T |
|
| Q |
148 |
caagaaaatcatgagaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgattatgtcaaacttaacttccatatcttgaacacttttact |
247 |
Q |
| |
|
|| | ||| |||| ||||||||||| | | || |||| || |||| ||| ||| ||||||||||| |||| | |||||| |||||||||||| |
|
|
| T |
22986468 |
gaatataattttgagcatgtgttgcttgaagagacccaaaaactgctttctttcttgtggacatgtcaaacttcactttcttatctttaacacttttact |
22986567 |
T |
|
| Q |
248 |
aaaatggacaatcgtcaaaacatgttatgctttaggaaga |
287 |
Q |
| |
|
|||| |||| || |||||||| || |||||||| |||| |
|
|
| T |
22986568 |
aaaaaagacacacgccaaaacatattgtgctttagcaaga |
22986607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 287
Target Start/End: Complemental strand, 23802026 - 23801787
Alignment:
| Q |
48 |
tcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatgacatatgctgacataacccatccatcaggatagcta |
147 |
Q |
| |
|
||||||| |||| || ||||||||| ||||||||||| ||||| ||| ||||||| | ||||| ||||||||| ||||| ||||||| |||| |||| |
|
|
| T |
23802026 |
tcatcaataggatgtaatggaatcatgaggcgatatctgaggattgtatgatactctagggatgaaatatgctgatataactcatccatagggatggcta |
23801927 |
T |
|
| Q |
148 |
caagaaaatcatgagaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgattatgtcaaacttaacttccatatcttgaacacttttact |
247 |
Q |
| |
|
|| | ||| |||| ||||||||||| | | || |||| || |||| ||| ||| ||||||||||| |||| | |||||| |||||||||||| |
|
|
| T |
23801926 |
gaatataattttgagcatgtgttgcttgaagagacccaaaaactgctttctttcttgtggacatgtcaaacttcactttcttatctttaacacttttact |
23801827 |
T |
|
| Q |
248 |
aaaatggacaatcgtcaaaacatgttatgctttaggaaga |
287 |
Q |
| |
|
|||| |||| || |||||||| || |||||||| |||| |
|
|
| T |
23801826 |
aaaaaagacacacgccaaaacatattgtgctttagcaaga |
23801787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 236
Target Start/End: Complemental strand, 23910937 - 23910760
Alignment:
| Q |
59 |
aaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatgacatatgctgacataacccatccatcaggatagctacaagaaaatca |
158 |
Q |
| |
|
|||| |||||||||||||||||||| ||| || ||||| ||| ||||||| ||||||||||| || |||| |||| || |||||| || || ||||| |
|
|
| T |
23910937 |
aaattgtggaatcataaggcgatatttaaagagagtacaatattccactggtgacatatgctaacctaactcatcaattgggatagttagaaaaaaattc |
23910838 |
T |
|
| Q |
159 |
tgagaatgtgttgctttcgaacatcctaaaagtgacttctgtctagtgattatgtcaaacttaacttccatatcttga |
236 |
Q |
| |
|
| | ||||||||||| | |||| ||| ||| || ||||| | | ||||| ||| |||||||| |||||||| |||| |
|
|
| T |
23910837 |
taaacatgtgttgcttgcaaacaccctcaaactgtcttctatattgtgatcgtgtgaaacttaaattccatatgttga |
23910760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 143
Target Start/End: Complemental strand, 26225320 - 26225235
Alignment:
| Q |
58 |
gaaatagtggaatcataaggcgatatctaaggatagtacgatactccactgatgacatatgctgacataacccatccatcaggata |
143 |
Q |
| |
|
|||||| ||||||||| || ||||||||||||||||||| ||||| ||| ||||||||| |||| |||| |||| || |||||| |
|
|
| T |
26225320 |
gaaataatggaatcatggggtgatatctaaggatagtacggtactctacttgtgacatatgttgacctaactcatcaataaggata |
26225235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 284
Target Start/End: Complemental strand, 7200084 - 7199996
Alignment:
| Q |
195 |
ttctgtctagtgattatgtcaaacttaacttccatatcttgaacacttttactaaaatggacaatcgtcaaaacatgttatgctttagga |
284 |
Q |
| |
|
|||||||| ||| | || |||||||| ||||||||||||||| || ||||||||||| | || || ||||||||||| |||||||||| |
|
|
| T |
7200084 |
ttctgtcttgtggtcatatcaaacttcacttccatatcttgatcaattttactaaaaaag-cattcaccaaaacatgttgtgctttagga |
7199996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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