View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18638_low_18 (Length: 286)
Name: NF18638_low_18
Description: NF18638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18638_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 30 - 269
Target Start/End: Original strand, 42153755 - 42153992
Alignment:
| Q |
30 |
aagtcttatccacttgaattcaaagagagatcaactttactttattttcatatcaccccnnnnnnnnnnnnnnnnntctttcaaacttttctaattttat |
129 |
Q |
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| T |
42153755 |
aagtcttatccacttgaattcaaagagagatcaactttactttattttcatatcaccc--aaaacaaaacaaaaaatctttgaaacttttctaattttat |
42153852 |
T |
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| Q |
130 |
agtattaactacataaacaaaaagtgaccaaattgaaatccaacttcttcctaagttgagcttcatataaaaaatatgatcaaaaagaagttggccaacg |
229 |
Q |
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| T |
42153853 |
agtattaactacataaacaaaaagtgaccaaattgaaatccaacttcttcctaagttgagcttcatataaaaaatatgatcaaaaagaagttggccaacg |
42153952 |
T |
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| Q |
230 |
gttaacttccctccaaaccaaaccttgtgattcactttga |
269 |
Q |
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| T |
42153953 |
gttaacttccctccaaaccaaaccttgtgattcactttga |
42153992 |
T |
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