View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18638_low_2 (Length: 750)

Name: NF18638_low_2
Description: NF18638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18638_low_2
NF18638_low_2
[»] chr3 (12 HSPs)
chr3 (290-545)||(29712860-29713115)
chr3 (290-735)||(29746701-29747155)
chr3 (19-229)||(29712595-29712799)
chr3 (323-494)||(29751764-29751935)
chr3 (354-501)||(29648978-29649125)
chr3 (432-501)||(30223119-30223188)
chr3 (353-501)||(30201116-30201264)
chr3 (417-501)||(30230345-30230429)
chr3 (333-397)||(29698802-29698866)
chr3 (353-499)||(30227291-30227437)
chr3 (390-499)||(29856826-29856935)
chr3 (397-478)||(30214706-30214787)
[»] chr4 (1 HSPs)
chr4 (555-722)||(41100698-41100869)
[»] chr8 (1 HSPs)
chr8 (297-499)||(1152915-1153117)
[»] chr6 (1 HSPs)
chr6 (353-493)||(5569421-5569561)
[»] chr1 (2 HSPs)
chr1 (405-487)||(16955668-16955750)
chr1 (405-486)||(16966187-16966268)


Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 290 - 545
Target Start/End: Original strand, 29712860 - 29713115
Alignment:
Q  290 cagcttcgtttgtagcatgaaggggtcctgtacgaagaaagctaaaggtgagagcacgacaaagccaaattggctcgaacttccaatagacctgatgaag 389  Q
    |||||||| || ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29712860 cagcttcgattttagcatgaagctttcctgtacgaagaaagctaaaggtgagagcacgacaaagccaaattggcttgaacttccaatagacctgatgaag 29712959  T
Q  390 aacatacttcaaagacttgatactgttgaaattgtgacaattgcacgtaatgtttgtcctttgtggcggaatatttgcaaggatcctctaatgtggcgta 489  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  29712960 aacatactccaaagacttgatactgttgaaattgtgacaagtgcacgtaatgtttgttctttgtggcggaatatttgcaaggatcctctaatgtggcgta 29713059  T
Q  490 ccattcacatgacttgtcgttttaactttagtagttcgtgcatggagaagatttgt 545  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  29713060 ccattcacatgatttgtcgttttaactttagtagttcgtgcatggagaagatttgt 29713115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 290 - 735
Target Start/End: Complemental strand, 29747155 - 29746701
Alignment:
Q  290 cagcttcgtttgtagcatgaaggggtcctgtacgaagaaagctaaaggtgagagcacgacaaagccaaattggctcgaacttccaatagacctgatgaag 389  Q
    |||| |||||||||||||||||||||| ||||  ||||||||||||| ||| ||||||||||||||||| ||||| |||||||| |||| | |||  |||    
T  29747155 cagcatcgtttgtagcatgaaggggtcgtgtatcaagaaagctaaagttgatagcacgacaaagccaaactggcttgaacttccgataggcttgacaaag 29747056  T
Q  390 aacatacttcaaagacttgatactgttgaaattgtgacaattgcacgtaatgtttgtcctttgtggcggaatatttgcaaggatcctctaatgtggcgta 489  Q
    ||||||||||| ||||||| |||| |||| |||||||||| |||||| ||||||||||||||||||||||| |||||| |||| ||||||||||||||||    
T  29747055 aacatacttcagagacttggtactattgatattgtgacaagtgcacgcaatgtttgtcctttgtggcggaaaatttgccaggaccctctaatgtggcgta 29746956  T
Q  490 ccattcacatgacttgtcgttttaactttagtagtt---cgtgcatggagaagatttgtcgctgtgcaattgacctaagttgcggtcaactagaagacat 586  Q
    ||||||||||  || || |||| | | ||  | |||   | | ||||| ||||||||||||| |||| |||||||||||| || || | || ||||||||    
T  29746955 ccattcacatagctagtggtttcaccattgattgttttgcttacatggggaagatttgtcgcagtgccattgacctaagtagcagtaatctggaagacat 29746856  T
Q  587 tgctgttagggggtttggaacagatgaacttctcaaatatatggctcataggtaatta---------gttttgtttgtttcaattccaattgtttcataa 677  Q
    | || ||||  |||||| ||| |||||||||||  ||||| |||||||||||||||||          ||||||||||||||||||||   |||||||||    
T  29746855 tactattagctggtttgcaactgatgaacttcttgaatatttggctcataggtaattaattagttgcattttgtttgtttcaattcca---gtttcataa 29746759  T
Q  678 taatacaataatttgttaagaactgtactgatccttctttatatgccatcttgcttaa 735  Q
    |||||| ||| |||||||  ||| | | |||||||||||  |||||||||||||||||    
T  29746758 taatactatattttgttatcaacagcattgatccttcttgctatgccatcttgcttaa 29746701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 29712595 - 29712799
Alignment:
Q  19 aaaccactaaatcggttatatatatttcaaatttcaaggtactgcttcagacttcagccctgcattctgtatc-atacatacaagtatactgttcatcac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||       ||||||| |||| ||||||||| |||||| |||||||||    
T  29712595 aaaccactaaatcggttatatatatttcaaatttcaaggtactgcttcagtttt-------gcattctatatcgatacatacaggtatacagttcatcac 29712687  T
Q  118 ctcatcttcaccattcaatttaaaaggttggtataattttcaatttattttcatctatctttttggctatttcagtactatcattggtctgcaatttgta 217  Q
     ||||||||||| ||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712688 ttcatcttcaccgttcaatttacaaggttggtgtaatttccaatttattttcatctatctttttggctatttcagtactatcattggtctgcaatttgta 29712787  T
Q  218 actgtaactcac 229  Q
    |||||| |||||    
T  29712788 actgtagctcac 29712799  T

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Target: chr3; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 323 - 494
Target Start/End: Original strand, 29751764 - 29751935
Alignment:
Q  323 gaagaaagctaaaggtgagagcacgacaaagccaaattggctcgaacttccaatagacctgatgaagaacatacttcaaagacttgatactgttgaaatt 422  Q
    ||||||||  |||| |||| ||| |||||||||||| ||| | ||||||||||| ||| |||  |||||||||||||  ||||||||||| |||||||||    
T  29751764 gaagaaagtgaaagttgagtgcatgacaaagccaaactggattgaacttccaattgacttgacaaagaacatacttcggagacttgataccgttgaaatt 29751863  T
Q  423 gtgacaattgcacgtaatgtttgtcctttgtggcggaatatttgcaaggatcctctaatgtggcgtaccatt 494  Q
    ||||||| ||||||||||||||||||| | ||| ||||  |||||||||||||||| |||||| ||||||||    
T  29751864 gtgacaagtgcacgtaatgtttgtcctctttggtggaacgtttgcaaggatcctctcatgtggagtaccatt 29751935  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 354 - 501
Target Start/End: Original strand, 29648978 - 29649125
Alignment:
Q  354 ccaaattggctcgaacttccaatagacctgatgaagaacatacttcaaagacttgatactgttgaaattgtgacaattgcacgtaatgtttgtcctttgt 453  Q
    ||||||||||| |||||||||| |||| | |  |  ||||| |||||| || ||||||||||||||||||| |||| |||| |    || |||||| | |    
T  29648978 ccaaattggcttgaacttccaagagacatcacaattaacatccttcaaggagttgatactgttgaaattgtaacaaatgcatgcctagtatgtcctctat 29649077  T
Q  454 ggcggaatatttgcaaggatcctctaatgtggcgtaccattcacatga 501  Q
     | |||| ||||| ||||||||||| ||||||||||||||||||||||    
T  29649078 cgtggaacatttgtaaggatcctctcatgtggcgtaccattcacatga 29649125  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 432 - 501
Target Start/End: Original strand, 30223119 - 30223188
Alignment:
Q  432 gcacgtaatgtttgtcctttgtggcggaatatttgcaaggatcctctaatgtggcgtaccattcacatga 501  Q
    ||||| ||||| |||||||  ||| |||| ||||||||||||||||| |||||||| |||||||||||||    
T  30223119 gcacgcaatgtgtgtccttattggtggaacatttgcaaggatcctctcatgtggcgcaccattcacatga 30223188  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 353 - 501
Target Start/End: Original strand, 30201116 - 30201264
Alignment:
Q  353 gccaaattggctcgaacttccaatagacctgatgaagaacatacttcaaagacttgatactgttgaaattgtgacaattgcacgtaatgtttgtcctttg 452  Q
    |||||||||||| |||||||| | |||| | |   | ||||| |||||||| |||  |||  ||||||||||||||| |||| || | || |||||| |     
T  30201116 gccaaattggcttgaacttcctaaagacattacagaaaacattcttcaaaggcttagtaccattgaaattgtgacaagtgcatgtcaagtgtgtcctcta 30201215  T
Q  453 tggcggaatatttgcaaggatcctctaatgtggcgtaccattcacatga 501  Q
    ||| |||| ||||||||||||||||| |||||||  |||||||| ||||    
T  30201216 tggtggaacatttgcaaggatcctctcatgtggcacaccattcatatga 30201264  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 417 - 501
Target Start/End: Original strand, 30230345 - 30230429
Alignment:
Q  417 gaaattgtgacaattgcacgtaatgtttgtcctttgtggcggaatatttgcaaggatcctctaatgtggcgtaccattcacatga 501  Q
    |||||| |||||| |||||| ||||| |||||||  ||| |||  ||||||||||||||||  |||||||| |||||||||||||    
T  30230345 gaaattttgacaaatgcacgcaatgtgtgtccttattggtggagcatttgcaaggatcctcgcatgtggcgcaccattcacatga 30230429  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 29698802 - 29698866
Alignment:
Q  333 aaaggtgagagcacgacaaagccaaattggctcgaacttccaatagacctgatgaagaacatact 397  Q
    |||| ||||||||| | ||||||||| ||||| ||||||||||||||  ||| ||||||||||||    
T  29698802 aaagatgagagcacaagaaagccaaactggcttgaacttccaatagaattgacgaagaacatact 29698866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 353 - 499
Target Start/End: Original strand, 30227291 - 30227437
Alignment:
Q  353 gccaaattggctcgaacttccaatagacctgatgaagaacatacttcaaagacttgatactgttgaaattgtgacaattgcacgtaatgtttgtcctttg 452  Q
    |||||||||||| |||||||| | |||| | |  |  ||||| |||||||| |||| |||  | || |||||||||| |||| || | || |||||| |     
T  30227291 gccaaattggcttgaacttcctagagacatcacaacaaacattcttcaaaggcttggtaccatcgagattgtgacaagtgcatgtcaagtgtgtcctcta 30227390  T
Q  453 tggcggaatatttgcaaggatcctctaatgtggcgtaccattcacat 499  Q
    | | |||| ||||||||||||||||| |||||||| |||||| ||||    
T  30227391 tagtggaacatttgcaaggatcctctcatgtggcgcaccatttacat 30227437  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 390 - 499
Target Start/End: Original strand, 29856826 - 29856935
Alignment:
Q  390 aacatacttcaaagacttgatactgttgaaattgtgacaattgcacgtaatgtttgtcctttgtggcggaatatttgcaaggatcctctaatgtggcgta 489  Q
    ||||| |||||||| ||||||||  ||||||| |||| || |||| || | ||||||||| | ||| || | || || || ||||||||  |||||||||    
T  29856826 aacatccttcaaaggcttgatacaattgaaatcgtgaaaagtgcatgtcaagtttgtcctctatggtgggacatatgtaaagatcctctcctgtggcgta 29856925  T
Q  490 ccattcacat 499  Q
    ||||||||||    
T  29856926 ccattcacat 29856935  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 397 - 478
Target Start/End: Original strand, 30214706 - 30214787
Alignment:
Q  397 ttcaaagacttgatactgttgaaattgtgacaattgcacgtaatgtttgtcctttgtggcggaatatttgcaaggatcctct 478  Q
    |||||||||||| |||  |||| |||||||||| |||| || | || |||||| | ||| |||| |||||||||||||||||    
T  30214706 ttcaaagacttggtaccattgagattgtgacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatcctct 30214787  T

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Target: chr4 (Bit Score: 115; Significance: 5e-58; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 555 - 722
Target Start/End: Complemental strand, 41100869 - 41100698
Alignment:
Q  555 attgacctaagttgcggtcaactagaagacattgctgttagggggtttggaacagatgaacttctcaaatatatggctcataggtaattagttttgtttg 654  Q
    ||||||||||||||| |||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  41100869 attgacctaagttgcagtcatctggaagacattgctgttagggggtttggaaccgatgaacttctcaaatatatggctcataggtaattagttttctttg 41100770  T
Q  655 tttcaattccaatt----gtttcataataatacaataatttgttaagaactgtactgatccttctttatatg 722  Q
    ||||||||||| ||    |||||||||||||| ||||||||||||  ||||||||||||||||||| |||||    
T  41100769 tttcaattccagtttgcagtttcataataatataataatttgttatcaactgtactgatccttcttgatatg 41100698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 3e-53; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 297 - 499
Target Start/End: Complemental strand, 1153117 - 1152915
Alignment:
Q  297 gtttgtagcatgaaggggtcctgtacgaagaaagctaaaggtgagagcacgacaaagccaaattggctcgaacttccaatagacctgatgaagaacatac 396  Q
    ||||||||||||||| |||| |||  | | ||||| |||| ||||||||| | ||| |||||||||||  |||||||||||||| |||| | |||||| |    
T  1153117 gtttgtagcatgaagaggtcttgtgtggaaaaagcgaaagttgagagcacaagaaatccaaattggcttcaacttccaatagacttgataaggaacatcc 1153018  T
Q  397 ttcaaagacttgatactgttgaaattgtgacaattgcacgtaatgtttgtcctttgtggcggaatatttgcaaggatcctctaatgtggcgtaccattca 496  Q
    |||||||||| ||||||||||||||||| |||| ||||||||||||||||||| ||||| || | |||||||||||||||||||||||||||||||||||    
T  1153017 ttcaaagactggatactgttgaaattgtaacaagtgcacgtaatgtttgtcctctgtggtggcacatttgcaaggatcctctaatgtggcgtaccattca 1152918  T
Q  497 cat 499  Q
    |||    
T  1152917 cat 1152915  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 353 - 493
Target Start/End: Complemental strand, 5569561 - 5569421
Alignment:
Q  353 gccaaattggctcgaacttccaatagacctgatgaagaacatacttcaaagacttgatactgttgaaattgtgacaattgcacgtaatgtttgtcctttg 452  Q
    |||||||||||| | |||||||| |||| | | |  |||||| |||||||| ||||||||| ||||  | || |||| |||| || | || |||||| |     
T  5569561 gccaaattggcttgcacttccaagagacatcacggtgaacatccttcaaaggcttgatactattgatgtagtaacaagtgcatgtcaagtgtgtcctcta 5569462  T
Q  453 tggcggaatatttgcaaggatcctctaatgtggcgtaccat 493  Q
    ||| |||| |||||||||||||||||  |||||||||||||    
T  5569461 tggtggaacatttgcaaggatcctcttgtgtggcgtaccat 5569421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 405 - 487
Target Start/End: Complemental strand, 16955750 - 16955668
Alignment:
Q  405 cttgatactgttgaaattgtgacaattgcacgtaatgtttgtcctttgtggcggaatatttgcaaggatcctctaatgtggcg 487  Q
    ||||||||| |||||||||| |||| || | || | || || ||||| ||| |||||||||||||||||||||| ||||||||    
T  16955750 cttgatactattgaaattgtcacaagtgtatgtcaagtgtgccctttatggtggaatatttgcaaggatcctctcatgtggcg 16955668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 405 - 486
Target Start/End: Complemental strand, 16966268 - 16966187
Alignment:
Q  405 cttgatactgttgaaattgtgacaattgcacgtaatgtttgtcctttgtggcggaatatttgcaaggatcctctaatgtggc 486  Q
    ||||||||| ||||||| || |||| || | || | || |||||||| ||| |||||||||||||||||||||  |||||||    
T  16966268 cttgatactattgaaatagtcacaagtgtatgtcaagtgtgtcctttatggtggaatatttgcaaggatcctcacatgtggc 16966187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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