View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18638_low_25 (Length: 238)
Name: NF18638_low_25
Description: NF18638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18638_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 13857463 - 13857681
Alignment:
| Q |
1 |
cacacatttacatatctacttgagagttgagaaatgacacttcatggcaaacctttgatcaacttctagggtacaatgttgttaagaaaaatttataata |
100 |
Q |
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| T |
13857463 |
cacacatttacatatctactttagagttgagaaatgacacttcatggcaaacctttgatcaacttctagggtacaatgttgtcaagaaaaatttataata |
13857562 |
T |
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| Q |
101 |
gaaattcagaaacacaatccaatagaataagacaccattctccaatccaattcaggtatcaacaatgtgtgcaaaatcacgacattaggcttgtttatga |
200 |
Q |
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| T |
13857563 |
gaaattcagaaacacaatccaatagaataagacaccattctctaatccaattcaggtatcaacaatgtgtgcaaaatcacgacattaggcttgtttatga |
13857662 |
T |
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| Q |
201 |
agaatgacatacatataac |
219 |
Q |
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| T |
13857663 |
agaatgacatacatataac |
13857681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 13865985 - 13866196
Alignment:
| Q |
1 |
cacacatttacatatctacttgagagttgagaaatgacacttcatggc-aaacctttgatcaacttctagggtacaatgttgttaagaaaaatttataa- |
98 |
Q |
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| T |
13865985 |
cacacatttacatatctacttgaga------aaacaaaacttcatggccaaacctttga-catcttctaggatacaatgtcatcaagaaaaatttataag |
13866077 |
T |
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| Q |
99 |
--tagaaattcagaaacacaatccaatagaataagacaccattctccaatccaattcaggtatcaacaatgtgtgcaaaatcacgacattaggcttgttt |
196 |
Q |
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| T |
13866078 |
aatataaattcagaaacacaatccaaaagaataagaaatcattctctaatccaattcaggtatcagcaatgtgcgcaaaatcacgacattgggcctgttt |
13866177 |
T |
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| Q |
197 |
atgaagaatgacatacata |
215 |
Q |
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| T |
13866178 |
atgaagaatgacatacata |
13866196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 97 - 221
Target Start/End: Complemental strand, 14391692 - 14391568
Alignment:
| Q |
97 |
aatagaaattcagaaacacaatccaatagaataagacaccattctccaatccaattcaggtatcaacaatgtgtgcaaaatcacgacattaggcttgttt |
196 |
Q |
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| T |
14391692 |
aatagaaattcagatacacaattctacagaataggatatcatactcaaatccaatgcagttgtcaacaatatgtacaaaatcactacattaggcttgttt |
14391593 |
T |
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| Q |
197 |
atgaagaatgacatacatataactt |
221 |
Q |
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| T |
14391592 |
atgaagaatgacatacatataactt |
14391568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 14397884 - 14397820
Alignment:
| Q |
157 |
tatcaacaatgtgtgcaaaatcacgacattaggcttgtttatgaagaatgacatacatataactt |
221 |
Q |
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| T |
14397884 |
tatcaacaatatgtacaaaatcacaacattaagcttgtttatgaagaatgacatacatataactt |
14397820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 211
Target Start/End: Original strand, 13883685 - 13883802
Alignment:
| Q |
97 |
aatagaaattcagaaacacaatccaatagaataagacaccattctccaatccaattcag-----gtatcaacaatgtgtgcaaaatcacgacattaggct |
191 |
Q |
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| T |
13883685 |
aatagaaattcagaaacacaatccaacagagtaagacgtcatactctaatgcagtgcagaacaggtatcaacaatgtgg--aaaatcataacaataggct |
13883782 |
T |
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| Q |
192 |
tgtttatgaagaatgacata |
211 |
Q |
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| T |
13883783 |
tgtttatgaagaatgacata |
13883802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 14358584 - 14358637
Alignment:
| Q |
157 |
tatcaacaatgtgtgcaaaatcacgacattaggcttgtttatgaagaatgacat |
210 |
Q |
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| T |
14358584 |
tatcagcaatatttgcaaaagcacaacattaggcttgtttatgaagaatgacat |
14358637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 14389991 - 14389943
Alignment:
| Q |
153 |
caggtatcaacaatgtgtgcaaaatcacgacattaggcttgtttatgaa |
201 |
Q |
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| T |
14389991 |
caggaatcagcaatatgtgcaaaatcacaacattaggcttgtttatgaa |
14389943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 214
Target Start/End: Original strand, 16021913 - 16021945
Alignment:
| Q |
182 |
acattaggcttgtttatgaagaatgacatacat |
214 |
Q |
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| T |
16021913 |
acattaggcttgttaatgaagaatgacatacat |
16021945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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