View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18638_low_29 (Length: 221)
Name: NF18638_low_29
Description: NF18638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18638_low_29 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 32768303 - 32768522
Alignment:
| Q |
1 |
cttggccaataacactcttcaattattactaccccataattaagtacacaaatcattattagaatatgtctaatgttaaaaacaatcgaacagttaaatc |
100 |
Q |
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| T |
32768303 |
cttggccaatagcacttttcaattattactaccccataattaagtacacaaatcattattagaatatgtctaatgttaaaaacaatcgaacagttaaatc |
32768402 |
T |
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| Q |
101 |
aggttaagtctcaaaagtagggttagtgatcattgagacctagatcggtttatggacattcgtaaacacatnnnnnnnncattaagggcgtgtttgatct |
200 |
Q |
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| T |
32768403 |
aggttaagcctcaaaagtagggttagtgatcattgagacctagatcggtttatggacattcgtaaacacat-aaaaaaacattaagggtgtgtttgatct |
32768501 |
T |
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| Q |
201 |
gctaaacatgacataataaca |
221 |
Q |
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| T |
32768502 |
gctaaacatgacagaataaca |
32768522 |
T |
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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 49 - 166
Target Start/End: Original strand, 35948241 - 35948358
Alignment:
| Q |
49 |
caaatcattattagaatatgtctaatgttaaaaacaatcgaacagttaaatcaggttaagtctcaaaagtagggttagtgatcattgagacctagatcgg |
148 |
Q |
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| T |
35948241 |
caaattattattagaatatttctaaagctagtaaaaattgaacaattaaattaggtcaagccccaaaattagagttagtaatcattgaaacttagatcgg |
35948340 |
T |
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| Q |
149 |
tttatggacattcgtaaa |
166 |
Q |
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| T |
35948341 |
tttatgaacattcgtaaa |
35948358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 73
Target Start/End: Original strand, 27127986 - 27128021
Alignment:
| Q |
38 |
aattaagtacacaaatcattattagaatatgtctaa |
73 |
Q |
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| T |
27127986 |
aattaagtacacaaatcattattagaatatttctaa |
27128021 |
T |
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