View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18638_low_4 (Length: 615)
Name: NF18638_low_4
Description: NF18638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18638_low_4 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 379 - 615
Target Start/End: Original strand, 36162039 - 36162275
Alignment:
| Q |
379 |
agaacaaaaataaatactccaaaacattgttcctaattcatcaaagtatattatatgatgcaaaatttgactaaatatctagtgctgctaccttaaaaca |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
36162039 |
agaacaaaaataaatactccaaaacattgttcgtaattcatcaaagtatattatatgatgcaaaatttgactaaatatctagtgcagctaccttaaaaca |
36162138 |
T |
|
| Q |
479 |
tgaatgaaacgttcttgaaaaaatgccatacttgtggagaaaaagtgaagaaagtgaagcaagaaaacagtaggatctgcttcaattaatggaggagcaa |
578 |
Q |
| |
|
||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36162139 |
tgactgaaacgttcttgaaaaaatgtcatacttgtggagaaaaagtgaagaaagtgaagcaagaaaacagtaggatctgcttcaattaatggaggagcaa |
36162238 |
T |
|
| Q |
579 |
gaaacggtgcagataacttgtttgtcagtagcaaata |
615 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36162239 |
gaaacggtgcagataacttgtttgtcagtagcaaata |
36162275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 487 - 538
Target Start/End: Original strand, 36153207 - 36153257
Alignment:
| Q |
487 |
acgttcttgaaaaaatgccatacttgtggagaaaaagtgaagaaagtgaagc |
538 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||| |||||||| ||||||| |
|
|
| T |
36153207 |
acgttcttgaaaaa-tgtcatacttgtggagaaaaggtgaagaaggtgaagc |
36153257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University