View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18638_low_6 (Length: 568)
Name: NF18638_low_6
Description: NF18638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18638_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 16 - 554
Target Start/End: Complemental strand, 5510626 - 5510084
Alignment:
| Q |
16 |
atacaacttcatgactggactataaagtaacagaactagaattcatggaacagaaaaactaaatagaaaagccataatccaattaagtaacagaaaggaa |
115 |
Q |
| |
|
|||||| ||||| ||| ||||||||||||| |||| | ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
5510626 |
atacaatttcattactagactataaagtaaatgaacaaaaattcatggaacagaaaaactaaatagaaaaaccagaatccaattaagtaacagaaaggaa |
5510527 |
T |
|
| Q |
116 |
aaccacaattttgtgatatgacaaaccaaggtccaggatttctagatattattcaaaacacaagccgaaactacaactacttgataattctggctcattt |
215 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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|
| T |
5510526 |
aaccacaatttagtgatattacaaaccaaggtccaggatttctagatattattcaaaacacaagccgaaactacaactgcttggtaattctggctcattt |
5510427 |
T |
|
| Q |
216 |
gaaagatcattaaatcaaccaactagtttgtttttgctttgatgtcaaaaccggtaaaaagtgtctggtaaaaaatttc----caagtccactagtcagg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| || |||| ||||||||||| |
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| T |
5510426 |
gaaagatcattaaatcaaccaactagtttgtttttgctttgatgtcaaaaccagtaaaaagggtctgataaaaaacgtctaattaagtacactagtcagg |
5510327 |
T |
|
| Q |
312 |
gtaaattttgatgtgaagaatgcttgaaggaagctcaaagcctacaccacaagtaaagggaatacaagaggttnnnnnnnnnnnnnnnngtaataaattc |
411 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5510326 |
gtaaattttgatgtgaataatgcttgaaggaagctcttagcctacaccacaagtaaagggaatacaagaggttaaaaaaacagaaaaaagtaataaattc |
5510227 |
T |
|
| Q |
412 |
agtaattaaataatagccaccttacctcatcttcaccaatggtaatcacggtcacttcaagatcatcaagaggaaggcttaattctttcagatatgaaag |
511 |
Q |
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|
|||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5510226 |
agtaattaaataatagccaccttacctcttcttcaccaacggtaatcacggccacttcaaggtcatcaagaggaaggcttaattctttcagatatgaaag |
5510127 |
T |
|
| Q |
512 |
aaaagaattagcagcaagtggttttacttctagatcatctcct |
554 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5510126 |
aaaagaattagcagcaagtggttttacttctagatcatctcct |
5510084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 291 - 554
Target Start/End: Original strand, 5446022 - 5446284
Alignment:
| Q |
291 |
tttccaagtccactagtcagggtaaattttgatgtgaagaatgcttgaaggaagctcaaagcctacaccacaagtaaagggaatacaagaggttnnnnnn |
390 |
Q |
| |
|
||||| ||||||||||||| |||||| |||| ||| |||||||||| ||||||||||||||||||||| ||||||||| ||||| |||||||| |
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| T |
5446022 |
tttcccagtccactagtcaaggtaaactttgctgtcaagaatgctttaaggaagctcaaagcctacacaacaagtaaaaggaatcaaagaggttataaaa |
5446121 |
T |
|
| Q |
391 |
nnnnnnnnnngtaataaattcagtaattaaataatagccaccttacctcatcttcaccaatggtaatcacggtcacttcaagatcatcaagaggaaggct |
490 |
Q |
| |
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|| |||||||| |||| |||||||| ||| |||||||| ||||||||||| | ||||| ||||| |||||| |||| || ||||| |
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| T |
5446122 |
acgaaaaaaatta-taaattcactaataaaataatatccaacttacctcggcttcaccaatgcttatcacctccacttgaagatcttcaatggggaggct |
5446220 |
T |
|
| Q |
491 |
taattctttcagatatgaaagaaaagaattagcagcaagtggttttacttctagatcatctcct |
554 |
Q |
| |
|
||||||||||| |||| |||| ||||||||||||| ||||| |||||||| ||||||||||||| |
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|
| T |
5446221 |
taattctttcaaatataaaaggaaagaattagcagaaagtgattttacttttagatcatctcct |
5446284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 418 - 554
Target Start/End: Complemental strand, 5489594 - 5489461
Alignment:
| Q |
418 |
taaataatagccaccttacctcatcttcaccaatggtaatcacggtcacttcaagatcatcaagaggaaggcttaattctttcagatatgaaagaaaaga |
517 |
Q |
| |
|
||||| |||||||| |||||||| ||||||||||| | ||| |||||||||||||||||||||||||||||||| |||||| ||||||||| ||||| |
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|
| T |
5489594 |
taaatgatagccacattacctcagcttcaccaatgct---caccttcacttcaagatcatcaagaggaaggcttaatactttcaaatatgaaagcaaaga |
5489498 |
T |
|
| Q |
518 |
attagcagcaagtggttttacttctagatcatctcct |
554 |
Q |
| |
|
|||||||| |||||||||||| | ||||||||||||| |
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|
| T |
5489497 |
attagcagaaagtggttttacatttagatcatctcct |
5489461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 420 - 554
Target Start/End: Original strand, 5981058 - 5981192
Alignment:
| Q |
420 |
aataatagccaccttacctcatcttcaccaatggtaatcacggtcacttcaagatcatcaagaggaaggcttaattctttcagatatgaaagaaaagaat |
519 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||| | ||||| ||||||||||||||||||| |||| ||| |||||||||| ||||||||| |||||| |
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|
| T |
5981058 |
aataatagccactttacctcagcttcaccaatgcttatcaccttcacttcaagatcatcaaggggaaagctcaattctttcaaatatgaaagccaagaat |
5981157 |
T |
|
| Q |
520 |
tagcagcaagtggttttacttctagatcatctcct |
554 |
Q |
| |
|
|||||| ||||| |||||||| ||||||||||||| |
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|
| T |
5981158 |
tagcagaaagtgattttacttttagatcatctcct |
5981192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 426 - 539
Target Start/End: Original strand, 5435516 - 5435629
Alignment:
| Q |
426 |
agccaccttacctcatcttcaccaatggtaatcacggtcacttcaagatcatcaagaggaaggcttaattctttcagatatgaaagaaaagaattagcag |
525 |
Q |
| |
|
|||||| |||||||| ||||||||||| | ||||| ||||||||||||||||||||||||| ||||||||||||| |||| |||| |||||||||| || |
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|
| T |
5435516 |
agccacattacctcagcttcaccaatgcttatcaccttcacttcaagatcatcaagaggaagacttaattctttcaaatataaaaggaaagaattagtag |
5435615 |
T |
|
| Q |
526 |
caagtggttttact |
539 |
Q |
| |
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||||||||||||| |
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|
| T |
5435616 |
aaagtggttttact |
5435629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 420 - 554
Target Start/End: Original strand, 5995981 - 5996115
Alignment:
| Q |
420 |
aataatagccaccttacctcatcttcaccaatggtaatcacggtcacttcaagatcatcaagaggaaggcttaattctttcagatatgaaagaaaagaat |
519 |
Q |
| |
|
|||| ||| ||| |||||||| ||||||||||| | ||||| |||||||||||||| |||| |||| ||| |||||||||| ||||||||| |||||| |
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|
| T |
5995981 |
aatagtagtcactttacctcagcttcaccaatgcttatcacattcacttcaagatcaacaaggggaaagctcaattctttcaaatatgaaaggcaagaat |
5996080 |
T |
|
| Q |
520 |
tagcagcaagtggttttacttctagatcatctcct |
554 |
Q |
| |
|
|||||| || |||||||||| ||||||||||||| |
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|
| T |
5996081 |
tagcagaaaaaggttttacttttagatcatctcct |
5996115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 433 - 549
Target Start/End: Original strand, 5457409 - 5457525
Alignment:
| Q |
433 |
ttacctcatcttcaccaatggtaatcacggtcacttcaagatcatcaagaggaaggcttaattctttcagatatgaaagaaaagaattagcagcaagtgg |
532 |
Q |
| |
|
|||||||| ||||||||||| | ||||| || |||||||||| ||||||| ||||||||||||||||| | || |||| ||||||||||||| | |||| |
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|
| T |
5457409 |
ttacctcagcttcaccaatgcttatcacattcgcttcaagatcgtcaagagaaaggcttaattctttcaaacataaaaggaaagaattagcagaatgtgg |
5457508 |
T |
|
| Q |
533 |
ttttacttctagatcat |
549 |
Q |
| |
|
|||||||| |||||||| |
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|
| T |
5457509 |
ttttacttttagatcat |
5457525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 296 - 374
Target Start/End: Complemental strand, 5489708 - 5489630
Alignment:
| Q |
296 |
aagtccactagtcagggtaaattttgatgtgaagaatgcttgaaggaagctcaaagcctacaccacaagtaaagggaat |
374 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| |
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|
| T |
5489708 |
aagtccactagtcaaggtaaatcttgatgtcaagaatgctccaaggaagctcaaagcctacaccacaattaaagggaat |
5489630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 433 - 553
Target Start/End: Complemental strand, 5632435 - 5632315
Alignment:
| Q |
433 |
ttacctcatcttcaccaatggtaatcacggtcacttcaagatcatcaagaggaaggcttaattctttcagatatgaaagaaaagaattagcagcaagtgg |
532 |
Q |
| |
|
|||||||| ||||||| ||| | ||||| ||| ||| ||||||||||| || |||||||||||||||| |||||||| ||||| || ||| |||||| |
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|
| T |
5632435 |
ttacctcagcttcaccgatgcttatcaccttcatttccagatcatcaagggggaggcttaattctttcaaatatgaaatgcaagaactaccagaaagtgg |
5632336 |
T |
|
| Q |
533 |
ttttacttctagatcatctcc |
553 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
5632335 |
ttttactgttagatcatctcc |
5632315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 300 - 374
Target Start/End: Original strand, 5457280 - 5457354
Alignment:
| Q |
300 |
ccactagtcagggtaaattttgatgtgaagaatgcttgaaggaagctcaaagcctacaccacaagtaaagggaat |
374 |
Q |
| |
|
|||||||| | ||||||| ||||||| ||||||||| |||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
5457280 |
ccactagttaaggtaaatcttgatgtcaagaatgctccaaggaagctcaaagcctacaccgcaattaaagggaat |
5457354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 363
Target Start/End: Original strand, 5435389 - 5435456
Alignment:
| Q |
296 |
aagtccactagtcagggtaaattttgatgtgaagaatgcttgaaggaagctcaaagcctacaccacaa |
363 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| ||||||| ||||| || ||||||||||||||||| |
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|
| T |
5435389 |
aagtccactagtcaaggtaaatcttgatgtcaagaatgtcccaaggatgcccaaagcctacaccacaa |
5435456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 1194472 - 1194528
Alignment:
| Q |
208 |
gctcatttgaaagatcattaaatcaaccaactagtttgtttttgctttgatgtcaaa |
264 |
Q |
| |
|
||||||| |||||||||| ||| ||||||||||||||||| | ||||||||||||| |
|
|
| T |
1194472 |
gctcattcgaaagatcatcaaactaaccaactagtttgtttctactttgatgtcaaa |
1194528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 1188858 - 1188907
Alignment:
| Q |
129 |
tgatatgacaaaccaaggtccaggatttctagatattattcaaaacacaa |
178 |
Q |
| |
|
|||||| |||||||||||| || ||||||||| |||| |||||||||||| |
|
|
| T |
1188858 |
tgatattacaaaccaaggttcaagatttctagctattgttcaaaacacaa |
1188907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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