View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18639_high_6 (Length: 415)
Name: NF18639_high_6
Description: NF18639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18639_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 94 - 403
Target Start/End: Original strand, 7242778 - 7243072
Alignment:
| Q |
94 |
atgatgtggtctctcaactctgaagcaatgtggtgaaaaatacaactgaccaagttttttagcttggaatcattggatgtggaatcaggtagcaatctct |
193 |
Q |
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| T |
7242778 |
atgatgtggtttctcaactctgaaccaatgtggtgaaaaatacaactgaccaaattttttagcttggaatcattggatgtggaatcaggtagcaatctct |
7242877 |
T |
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| Q |
194 |
agattcaattattatttggaacgctggttgctaggaaatgatttgaatcaatgagttttaacgagaaaaattaatattctagacaactctatgtttctat |
293 |
Q |
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| T |
7242878 |
agattcaattattatttggaacgctggttgctaggaaatgatttgaatcaatgagttttaacgagaaaaattaatattctagacaactctatgtttctaa |
7242977 |
T |
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| Q |
294 |
cttatatagtatgaatgacatgagtttgaacttgaggtcctcatcatattgaatatttttgtgctctttctacaatggagcaagtctttaagatgaacca |
393 |
Q |
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| T |
7242978 |
cttatatagta---------------tgaacttggagtcctcatcatattgaatttttttgtgctctttctacaatggagcaagtctttaagatgaacca |
7243062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 7242325 - 7242417
Alignment:
| Q |
9 |
gaacaatatagcaggagaataacctctaatttgtgccctataagtaatgattagccagaaactctcatgcatgcaatatgtgactatgatgtg |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7242325 |
gaacaatatagcaggagaataacctctaatttgtgccctataagtaatgattagccagaaactctcatgcatgcaatatgtgactatgatgtg |
7242417 |
T |
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