View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18639_high_8 (Length: 384)
Name: NF18639_high_8
Description: NF18639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18639_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 133; Significance: 5e-69; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 234 - 374
Target Start/End: Original strand, 35648809 - 35648949
Alignment:
| Q |
234 |
catggactaatacaatacttactttatgatgcttgttttaaagaacttggttgtagtatatattacattatactaatggattaccattttttcagctctt |
333 |
Q |
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| T |
35648809 |
catggactaatacaatactcactttatgatgcttgttttaaagaacttggttgtagtatatattacattatactaatggattaccattttttcagctctt |
35648908 |
T |
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| Q |
334 |
taaacaaactattttttggagagttacctttcttgtctctg |
374 |
Q |
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| T |
35648909 |
taaacaaactattttttggagagttacccttcttgtctctg |
35648949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 35648600 - 35648738
Alignment:
| Q |
20 |
cactatatgttgacatgtggagggcatgtgtcaagaactgaaggataaagtatatacgtggggttaaaagtgaatggtaacttctaaatggtaattgaga |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
35648600 |
cactatatgttgacatgtggagggcatgtgtcaagaactgaaggatcaagtatatacgtggggttaaaagtgaatggtaagttctaaatggtaattgaaa |
35648699 |
T |
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| Q |
120 |
atgtgccacgatgtttatttatgtccatctgaacattcttggg |
162 |
Q |
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| T |
35648700 |
atgtgccacgatg----tttatgtccatctgaacattcttggg |
35648738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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