View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18639_low_12 (Length: 254)
Name: NF18639_low_12
Description: NF18639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18639_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 48481335 - 48481556
Alignment:
| Q |
16 |
ataataacgaaataggtaaggaaaacctacctccgcggctcaatcgccggcgtcttctccgtcctccaacacgcatcctgtccagtaaacatcgccttcc |
115 |
Q |
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| T |
48481335 |
ataataacgaaataggtaaggaaaacctacctccgcggatcaatcgccggcgttttctccgtcctccaacacgcatcctgtccagtaaacatcgccttcc |
48481434 |
T |
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| Q |
116 |
acttcgtcacaaccccacaccgccgccgtcaagagctccgtcgcatcatcatttcaacttttccttacctcagcttaacatcaaccacttcgattcaaat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
48481435 |
acttcgtcacaaccccacaccgccgccgtcaagagctccgtcgcatcatcatttcaacttttccttacctcagcttaacatcaaccgcttcgattcaaat |
48481534 |
T |
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| Q |
216 |
cttgttcgcggaaagttcacat |
237 |
Q |
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|||||||||||||||||||||| |
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| T |
48481535 |
cttgttcgcggaaagttcacat |
48481556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 39 - 230
Target Start/End: Original strand, 42171153 - 42171345
Alignment:
| Q |
39 |
aacctacctccgcggctcaatcgccggcgtcttctccgtcctccaacacgcatcctgtccagtaaacatcgccttccacttcgtcacaaccccacaccgc |
138 |
Q |
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|||||||||||| || |||| |||||| |||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||| |
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| T |
42171153 |
aacctacctccgtggttcaaccgccggagtcttctccgtccttcaacacgcatcctgtccagaaaacatcgctttccacttcgtcacaaccacacaccgt |
42171252 |
T |
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| Q |
139 |
cgccgtcaagagctccgtcgcatcatcatttcaacttttccttacctcagctt-aacatcaaccacttcgattcaaatcttgttcgcggaaag |
230 |
Q |
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|| ||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||| ||||||||||||||||||| |||||||||||| |
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| T |
42171253 |
cgacgtcaagagctccgtcgcatcatcatttcaactttcccttacctcaacttccacatctaccacttcgattcaaatctcgttcgcggaaag |
42171345 |
T |
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