View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18639_low_13 (Length: 250)
Name: NF18639_low_13
Description: NF18639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18639_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 26657449 - 26657211
Alignment:
| Q |
1 |
tttgccgctctcttgttttcctatctaggtactcttttgcttgcacctgaactgatataaagaaacatcatttgtagtgacgcggtgaatatttacaatg |
100 |
Q |
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| T |
26657449 |
tttgccgctctcttgttttcctatctaggtactctgttgcttgcacctgaactgatataaagaaacatcatttgtagtgacgcggtgaatatttacaatg |
26657350 |
T |
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| Q |
101 |
cacaattcaattattgaaagaatatgaaaacaaccttaaaggtaaaacataaatgtccataaaattaacccttgaggaggaaaatatgataattattaca |
200 |
Q |
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| T |
26657349 |
cacaattcaattatcgaaagaatatgaaaacaaccttaaaggtaaaatataaatgtccataaaattaacccttgaggaggaaaatatgacaattattaca |
26657250 |
T |
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| Q |
201 |
atatgttcccataatacccaaccaaagtttatttttcat |
239 |
Q |
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| T |
26657249 |
atatgttcccataatacccaaccaaagtttattattcat |
26657211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 26643816 - 26643594
Alignment:
| Q |
1 |
tttgccgctctcttgttttcctatctaggtactcttttgcttgcacctgaactgatataaagaaacatcatttgtagtgacgcggtgaatatttacaatg |
100 |
Q |
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| T |
26643816 |
tttgctgctctcttgttttcctctctaggtactctgttgcttgcacttgaactgatgtatcaaaacatcatttgtagttaagcaatgaatatttataaag |
26643717 |
T |
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| Q |
101 |
cac-aattcaattattgaaagaatatgaaa-acaaccttaaaggtaaaacataaatgtccataaaattaacccttgaggaggaaaatatgataattatta |
198 |
Q |
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| T |
26643716 |
cacaaacccaattcttgatagaaaatgaaagtcaaccttaaagataaaatgtaaatgtccataaagttagtcactaaggaggaaaatatgacaattagta |
26643617 |
T |
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| Q |
199 |
caatatgttcccataatacccaa |
221 |
Q |
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| T |
26643616 |
caatatctccgcataatacccaa |
26643594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 7634110 - 7634061
Alignment:
| Q |
9 |
tctcttgttttcctatctaggtactcttttgcttgcacctgaactgatat |
58 |
Q |
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||||||||||| || |||||||||| | |||||||||| ||||||||||| |
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| T |
7634110 |
tctcttgtttttctttctaggtactatgttgcttgcacttgaactgatat |
7634061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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