View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18639_low_16 (Length: 239)
Name: NF18639_low_16
Description: NF18639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18639_low_16 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 6416059 - 6416279
Alignment:
| Q |
19 |
tgatgagcgtgagagggtgtaatgagaaaaactcaaatcccacacaggatacagtcctcaccttataaatca-ttttgtaaaaatgagttaggtcacata |
117 |
Q |
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| T |
6416059 |
tgatgagcgtgagagagtgtaatgagaaaaactcaaatcccacacaggatacaatcctcatcttataaatcagttttgtaaaaatgagttaggtcacata |
6416158 |
T |
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| Q |
118 |
tttcaccggtatttacttattatcttttttctgaaacctacnnnnnnnctttaatctctaaccaaccaaaaaggctgttagtttatgtgcttgactctca |
217 |
Q |
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| T |
6416159 |
tttcaccggtatttacttattatcttttt-ctggagcctactttttttctttaatctctaaccaaccaaaaaggctgttagtttatgtgcttgactctca |
6416257 |
T |
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| Q |
218 |
tgtttgaacattgttctgtttt |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
6416258 |
tgtttgaacattgttctgtttt |
6416279 |
T |
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