View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18639_low_17 (Length: 238)
Name: NF18639_low_17
Description: NF18639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18639_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 3580741 - 3580517
Alignment:
| Q |
1 |
agtgtaggaatcgaacacgagaaaactactgtctactccagggaagatgagaagagttcaaaacaagaaagtaaaaattacctcattctattnnnnnnnt |
100 |
Q |
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| T |
3580741 |
agtgtaggaatcgaacacgagaaaactactgtctactccagggaagatgagaagagttcaaaacaagaaagtaaatattacctcattctattagaaaaat |
3580642 |
T |
|
| Q |
101 |
tgatatatcaaaaagtaacaaatcttattagaaaagcttctctttctgttcatcaaaagcacagcggtaaaccatgacagacaacaacttgttgaacatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3580641 |
tgatatatcaaaaagtaacaaatcttattagaaaagcttctctttctgttcatcaaaagcacagcggtaaaccatgacagacaacaacttgttgaacatt |
3580542 |
T |
|
| Q |
201 |
ttcatggtttggtctttgttactga |
225 |
Q |
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||| ||||||||||||||||||||| |
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| T |
3580541 |
ttcttggtttggtctttgttactga |
3580517 |
T |
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