View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18639_low_2 (Length: 530)

Name: NF18639_low_2
Description: NF18639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18639_low_2
NF18639_low_2
[»] chr1 (19 HSPs)
chr1 (1-511)||(6592238-6592748)
chr1 (20-511)||(6601512-6602000)
chr1 (289-447)||(2010402-2010560)
chr1 (299-488)||(3340317-3340509)
chr1 (288-471)||(2011788-2011971)
chr1 (404-492)||(2006259-2006347)
chr1 (68-188)||(3361842-3361962)
chr1 (298-492)||(3361523-3361720)
chr1 (299-381)||(2948497-2948579)
chr1 (133-187)||(3340636-3340690)
chr1 (409-491)||(3372496-3372578)
chr1 (289-346)||(2019716-2019773)
chr1 (290-361)||(3218540-3218611)
chr1 (299-362)||(3349320-3349383)
chr1 (212-270)||(3349433-3349491)
chr1 (297-370)||(3372620-3372693)
chr1 (308-369)||(3378665-3378726)
chr1 (289-346)||(4335023-4335080)
chr1 (12-104)||(3218247-3218339)
[»] chr2 (5 HSPs)
chr2 (392-492)||(20934265-20934365)
chr2 (405-492)||(20952809-20952896)
chr2 (405-492)||(39273854-39273941)
chr2 (136-189)||(20923600-20923653)
chr2 (289-341)||(20923436-20923488)
[»] chr5 (1 HSPs)
chr5 (299-380)||(17969781-17969862)
[»] chr4 (1 HSPs)
chr4 (130-183)||(21237664-21237717)


Alignment Details
Target: chr1 (Bit Score: 499; Significance: 0; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 1 - 511
Target Start/End: Original strand, 6592238 - 6592748
Alignment:
Q  1 ttcaagcagaaggcagctggatattaagttttcaacagcatctttagtcaatgtaacatattgcagatcaagactcttcaagttcttgaaaccttgaaat 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6592238 ttcaagcataaggcagctggatattaagttttcaacagcatctttagtcaatgtaacatattgcagatcaagactcttcaagttcttgaaaccttgaaat 6592337  T
Q  101 gttgatggtggtataagccagcattctaataattctaaatgatgcaaactttgacaagaaaataaccatgaaggtattttatagcgttggactgggtttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6592338 gttgatggtggtataagccagcattctaataattctaaatgatgcaaactttgacaagaaaataaccatgaaggtattttatagcgttggtctgggtttt 6592437  T
Q  201 tccagatttctaacacaaactctttaacctgccatctggttagataaagagtccaccgatcaatatcagtgacatcaatgtgatcccgagagagcttgaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6592438 tccagatttctaacacaaactctttaacctgccatctggttagataaagagtccaccgatcaatatcagtgacatcaatgtgatcccgagagagcttgaa 6592537  T
Q  301 ctttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataactaaaaggtctttagaagtttcggagagacat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6592538 ctttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataactaaaaggtctttagaagtttcggagagacat 6592637  T
Q  401 tcattatcaaacacaagatttggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttctggctgcttccttaattggcaaaatcgaga 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6592638 tcattatcaaacacaagatttggaagtgtggtccatttgtacctccagttggtagataaaatacttgttctggctgcttccttaattggcaaaatcgaga 6592737  T
Q  501 gaatatggtct 511  Q
    |||||||||||    
T  6592738 gaatatggtct 6592748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 20 - 511
Target Start/End: Original strand, 6601512 - 6602000
Alignment:
Q  20 gatattaagttttcaacagcatctttagtcaatgtaacatattgcagatcaagactcttcaagttcttgaaaccttgaaatgttgatggtggtataagcc 119  Q
    ||||| |||||||||| |||||||| || ||| ||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  6601512 gatatcaagttttcaaaagcatcttgagacaaggtaacatgttgcagatcaagactcttcaagttcctgaatccttgaaatgttgatggtggtataagcc 6601611  T
Q  120 agcattctaataattctaaatgatgcaaactttgacaagaaaataaccatgaaggtattttatagcgttggactgggtttttccagatttctaacacaaa 219  Q
    | || |  ||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||  ||      ||||||||||| | ||||||    
T  6601612 aacagttaaataattctaaatgatgtaaaccttgacaagaaaataagcatgaaggtattttatagcgttgccct------ttccagatttccagcacaaa 6601705  T
Q  220 ctctttaacctgccatctggttagataaagagtccaccgatcaatatcagtgacatcaatgtgatcccga---gagagcttgaactttttgattggtcca 316  Q
    |||||||||  ||| ||||||||||| ||||||||| ||||||||||| || ||  ||||| | || |||   ||||||||||||||||||||||| |||    
T  6601706 ctctttaacaggccttctggttagatgaagagtccatcgatcaatatcggtcactccaatgagctcgcgatgggagagcttgaactttttgattggccca 6601805  T
Q  317 gaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataactaaaaggtctttagaagtttcggagagacattcattatcaaacacaa 416  Q
    ||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||| ||||||| |||||   ||||||||||||    
T  6601806 gaatggagtaaaagtacatgatcaataattctcgaaagtttgctcttgataactaaaaggtcttcagaagtgtcggagatacattggctatcaaacacaa 6601905  T
Q  417 gatttggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttctggctgcttccttaattggcaaaatcgagagaatatggtct 511  Q
    ||||||||||||||| ||||||||||||||| | ||| |||||||||||||||||  |||||||||||||||||||||| |||||||| ||||||    
T  6601906 gatttggaagtgtggcccatttgtacctccatttggttgataaaatacttgttctcactgcttccttaattggcaaaattgagagaatttggtct 6602000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 289 - 447
Target Start/End: Complemental strand, 2010560 - 2010402
Alignment:
Q  289 agagagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataactaaaaggtctttagaagtt 388  Q
    ||||||||||||||| |||||||| || |||   ||||||||||||||||||||||||    ||||||| |||| |||||||||| ||   |  || |||    
T  2010560 agagagcttgaacttgttgattggcccggaataaagtaaaagtacatgatcaataattgccaaaagctttctctcgataactaaagggcgatgggatgtt 2010461  T
Q  389 tcggagagacattcattatcaaacacaagatttggaagtgtggtccatttgtacctcca 447  Q
     | |||| |||||  |||||||||||||||||||| | |||||||||||||||||||||    
T  2010460 gcagagacacattgtttatcaaacacaagatttggtattgtggtccatttgtacctcca 2010402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 299 - 488
Target Start/End: Complemental strand, 3340509 - 3340317
Alignment:
Q  299 aactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataactaaaaggtctttagaagtttc---ggaga 395  Q
    ||||| |||||||| |||||| | ||||||||||||||||||| ||||||| ||| ||||||||  |||||| || ||| ||| ||||||||    || |    
T  3340509 aacttgttgattggcccagaatgaagtaaaagtacatgatcaacaattcttaaaaacttgctctcaataactgaagggtgtttggaagtttcagtagata 3340410  T
Q  396 gacattcattatcaaacacaagatttggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttctggctgcttccttaattg 488  Q
     |||||||  |||||||||||||| ||| |  |||| |||||| |  ||||| | | | ||||||| |||||||||  |||||||||||||||    
T  3340409 cacattcacgatcaaacacaagatctggtaaagtggaccatttctttctccaattgctcgataaaacacttgttcttactgcttccttaattg 3340317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 288 - 471
Target Start/End: Complemental strand, 2011971 - 2011788
Alignment:
Q  288 gagagagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataactaaaaggtctttagaagt 387  Q
    |||||||||||||||| |||||||| ||| ||   |||||||||||||| || ||||||    ||||||| ||||||||| ||  | ||| || ||| ||    
T  2011971 gagagagcttgaacttgttgattggcccataataaagtaaaagtacatggtcgataattgccaaaagctttctcttgatagctgcagggtgttcagatgt 2011872  T
Q  388 ttcggagagacattcattatcaaacacaagatttggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttct 471  Q
    | | || | |||||    |||||||||||||||||| | |||| |||||||||||||||| | | | |||||||||||||||||    
T  2011871 tgcagacacacattgtgaatcaaacacaagatttggtattgtgatccatttgtacctccatttgtttgataaaatacttgttct 2011788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 404 - 492
Target Start/End: Complemental strand, 2006347 - 2006259
Alignment:
Q  404 ttatcaaacacaagatttggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttctggctgcttccttaattggcaa 492  Q
    |||||||||||||||||||| | ||||| ||||||||||||||| | | | ||||||| |||||||||  | |||||| ||||||||||    
T  2006347 ttatcaaacacaagatttggtattgtggcccatttgtacctccatttgttggataaaacacttgttctcacagcttccctaattggcaa 2006259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 68 - 188
Target Start/End: Complemental strand, 3361962 - 3361842
Alignment:
Q  68 tcaagactcttcaagttcttgaaaccttgaaatgttgatggtggtataagccagcattctaataattctaaatgatgcaaactttgacaagaaaataacc 167  Q
    |||||||| |||||||||||||| |||| ||| |||| ||| ||| ||||||| ||   |  ||||||||||||||| |||||||||||||| ||||| |    
T  3361962 tcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaacagcattttaattctaaatgatgtaaactttgacaagagaataagc 3361863  T
Q  168 atgaaggtattttatagcgtt 188  Q
    |  |||| || ||||||||||    
T  3361862 accaagggatcttatagcgtt 3361842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 298 - 492
Target Start/End: Complemental strand, 3361720 - 3361523
Alignment:
Q  298 gaactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataactaaaaggtctttagaa---gtttcggag 394  Q
    |||||| |||||||| ||| || | ||||||||||||||||||| ||||||  ||| |||| | ||||||||  || ||||||  |||   || || |||    
T  3361720 gaacttgttgattggcccataatgaagtaaaagtacatgatcaacaattctcaaaaacttgttattgataaccgaagggtcttgggaatctgtatcagag 3361621  T
Q  395 agacattcattatcaaacacaagatttggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttctggctgcttccttaattggcaa 492  Q
    |  || |  |||||||| ||||||||||| || |||  ||||||||  ||||| | | | |||||||||||||||||  |||||||||| ||||||||    
T  3361620 atgcaatgtttatcaaatacaagatttggtagcgtgtaccatttgttactccatttgctggataaaatacttgttctcactgcttccttgattggcaa 3361523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 381
Target Start/End: Original strand, 2948497 - 2948579
Alignment:
Q  299 aactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataactaaaaggtcttt 381  Q
    ||||| |||||||| |||||| | ||||||||||||||||||| ||||||  ||| ||||||||  |||||| || |||||||    
T  2948497 aacttgttgattggcccagaatgaagtaaaagtacatgatcaacaattctcaaaaacttgctctcaataactgaagggtcttt 2948579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 3340690 - 3340636
Alignment:
Q  133 ttctaaatgatgcaaactttgacaagaaaataaccatgaaggtattttatagcgt 187  Q
    ||||||||| ||||||||||||||||| ||||| ||  |||||||||||||||||    
T  3340690 ttctaaatgttgcaaactttgacaagagaataagcagcaaggtattttatagcgt 3340636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 409 - 491
Target Start/End: Complemental strand, 3372578 - 3372496
Alignment:
Q  409 aaacacaagatttggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttctggctgcttccttaattggca 491  Q
    ||||||||||||||| ||||||  |||||||| |||||||  | | ||||||| |||||||||  ||||||| ||||||||||    
T  3372578 aaacacaagatttggtagtgtgtaccatttgttcctccagctgctggataaaacacttgttctcactgcttctttaattggca 3372496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 289 - 346
Target Start/End: Complemental strand, 2019773 - 2019716
Alignment:
Q  289 agagagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaataatt 346  Q
    ||||||||||||||| |||||||| || |||   ||||||||||||||||||||||||    
T  2019773 agagagcttgaacttgttgattggcccggaataaagtaaaagtacatgatcaataatt 2019716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 361
Target Start/End: Original strand, 3218540 - 3218611
Alignment:
Q  290 gagagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctc 361  Q
    ||||||| |||||| ||||| ||||||||| | |||| |||||||||||||| ||||||  | |||||||||    
T  3218540 gagagctggaacttgttgatcggtccagaatgaagtagaagtacatgatcaacaattctcaacagcttgctc 3218611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 362
Target Start/End: Complemental strand, 3349383 - 3349320
Alignment:
Q  299 aactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctct 362  Q
    ||||| |||||| | |||||| | ||||||||||||||||||||||||||  ||| ||||||||    
T  3349383 aacttgttgattagcccagaatgaagtaaaagtacatgatcaataattctcaaaaacttgctct 3349320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 3349491 - 3349433
Alignment:
Q  212 aacacaaactctttaacctgccatctggttagataaagagtccaccgatcaatatcagt 270  Q
    ||||||||||||||||  || | || |||||||| |||| |||||||||||||||||||    
T  3349491 aacacaaactctttaatatgtcttccggttagatgaagaatccaccgatcaatatcagt 3349433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 370
Target Start/End: Complemental strand, 3372693 - 3372620
Alignment:
Q  297 tgaactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataact 370  Q
    ||||||| |||||||| |||||| |  |||||||||||||||||| ||||||  ||| |||| | |||||||||    
T  3372693 tgaacttgttgattggaccagaatgttgtaaaagtacatgatcaacaattctcaaaaacttgttattgataact 3372620  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 369
Target Start/End: Complemental strand, 3378726 - 3378665
Alignment:
Q  308 attggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataac 369  Q
    ||||| |||||| | ||||||||||||||||| ||||||||  ||| |||||||| ||||||    
T  3378726 attggcccagaatgaagtaaaagtacatgatcgataattctcaaaaacttgctctcgataac 3378665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 346
Target Start/End: Original strand, 4335023 - 4335080
Alignment:
Q  289 agagagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaataatt 346  Q
    ||||| ||||||| | ||||||||||||||| | | ||||||||||||||||| ||||    
T  4335023 agagaacttgaacatgttgattggtccagaatgaactaaaagtacatgatcaacaatt 4335080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 3218247 - 3218339
Alignment:
Q  12 ggcagctggatattaagttttcaacagcatctttagtcaatgtaacatattgcagatcaagactcttcaagttcttgaaaccttgaaatgttg 104  Q
    |||||| |||||| |||||||||| |||||||| || || |||||| |  |  || |||||||| |||||||||||||| |||| ||| ||||    
T  3218247 ggcagccggatatcaagttttcaaaagcatcttgagccattgtaacctgatatagttcaagacttttcaagttcttgaagcctttaaacgttg 3218339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 392 - 492
Target Start/End: Complemental strand, 20934365 - 20934265
Alignment:
Q  392 gagagacattcattatcaaacacaagatttggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttctggctgcttccttaattggca 491  Q
    ||||||||||   ||||||||||||||||||| ||||||  |||||||| |||||| |   ||||||||| |||||||||  |||||||| |||||||||    
T  20934365 gagagacattgtctatcaaacacaagatttgggagtgtgtaccatttgttcctccattttttagataaaacacttgttctcactgcttccctaattggca 20934266  T
Q  492 a 492  Q
    |    
T  20934265 a 20934265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 405 - 492
Target Start/End: Complemental strand, 20952896 - 20952809
Alignment:
Q  405 tatcaaacacaagatttggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttctggctgcttccttaattggcaa 492  Q
    |||||||||||||||||||||||||| ||||||||| |||||| |   ||||||||| |||||||||  |||| ||| ||||| ||||    
T  20952896 tatcaaacacaagatttggaagtgtgttccatttgttcctccattttctagataaaacacttgttctcactgcatccctaatttgcaa 20952809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 405 - 492
Target Start/End: Complemental strand, 39273941 - 39273854
Alignment:
Q  405 tatcaaacacaagatttggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttctggctgcttccttaattggcaa 492  Q
    ||||||||||||||||||| ||||||  ||||||||||||||| | | | || |||| |||||||||  |||||||| ||||||||||    
T  39273941 tatcaaacacaagatttggtagtgtgtaccatttgtacctccattggctggacaaaacacttgttctcactgcttccctaattggcaa 39273854  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 20923653 - 20923600
Alignment:
Q  136 taaatgatgcaaactttgacaagaaaataaccatgaaggtattttatagcgttg 189  Q
    ||||||||| |||||||||||||| ||||| ||  ||||||| |||||||||||    
T  20923653 taaatgatgtaaactttgacaagagaataagcaccaaggtatgttatagcgttg 20923600  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 289 - 341
Target Start/End: Complemental strand, 20923488 - 20923436
Alignment:
Q  289 agagagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaa 341  Q
    ||||| ||||||||| |||||||| |||||| | |||||||||||||| ||||    
T  20923488 agagatcttgaacttgttgattggcccagaatgaagtaaaagtacatggtcaa 20923436  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 380
Target Start/End: Complemental strand, 17969862 - 17969781
Alignment:
Q  299 aactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataactaaaaggtctt 380  Q
    ||||| |||||||| || ||| | |||||||||||||||||||| |||||  ||| ||||| || ||||||| ||| |||||    
T  17969862 aacttgttgattggccctgaatgaagtaaaagtacatgatcaatgattctcaaaaacttgccctcgataactgaaaagtctt 17969781  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 21237717 - 21237664
Alignment:
Q  130 taattctaaatgatgcaaactttgacaagaaaataaccatgaaggtattttata 183  Q
    ||||||||||||||| |||||||||||||| ||||| ||  ||||||| |||||    
T  21237717 taattctaaatgatgtaaactttgacaagagaataagcaccaaggtatcttata 21237664  T

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