View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18639_low_3 (Length: 447)

Name: NF18639_low_3
Description: NF18639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18639_low_3
NF18639_low_3
[»] chr2 (12 HSPs)
chr2 (87-437)||(10370293-10370633)
chr2 (19-88)||(10370717-10370786)
chr2 (19-88)||(10346498-10346567)
chr2 (19-88)||(10350970-10351037)
chr2 (245-366)||(10350697-10350827)
chr2 (324-366)||(10346208-10346250)
chr2 (387-437)||(10350558-10350608)
chr2 (142-199)||(10340081-10340138)
chr2 (245-291)||(10339996-10340042)
chr2 (54-88)||(10340267-10340301)
chr2 (245-283)||(10346253-10346291)
chr2 (146-199)||(10346328-10346381)
[»] chr4 (3 HSPs)
chr4 (142-366)||(26573416-26573634)
chr4 (19-88)||(26573759-26573828)
chr4 (387-437)||(26573271-26573323)
[»] chr6 (1 HSPs)
chr6 (19-83)||(10857157-10857221)


Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 87 - 437
Target Start/End: Complemental strand, 10370633 - 10370293
Alignment:
Q  87 aaacctgttttgaaatgatcatacaattatattgcgtgtttcnnnnnnnnnnnnnaaatcatttttagccaaacctaagaatgatactattatagtttta 186  Q
    ||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||| || ||||||||    
T  10370633 aaacctgttttgaaatgatcatacaattatattgcgtgtttcttttttttttt--aaatcatttttagccaaacctaagaatgatactgttctagtttta 10370536  T
Q  187 ggaatttgtaaatttgtaaatgtgtgttacatgattttggaacattattannnnnnnnaatttcattttgtagtttttattgagaataggaaaatcaagt 286  Q
    |||||||||||||        ||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||    
T  10370535 ggaatttgtaaat--------gtgtgttacatgattttggaacattatttttttttttaatttcattttgtagtttttattgagaataggaaaatcaagt 10370444  T
Q  287 tgaaatgtgataagcattaatgctgtattagtttgagttgaattgcaactgtgatgggtaatgctttgttttaagcaactagaactcactttattccaaa 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10370443 tgaaatgtgataagcattaatgctgtattagtttgagttgaattgcaactgtgatgggtaatgctttgttttaagcaactagaactccctttattccaaa 10370344  T
Q  387 cttttgtaaatcatttcagttttttgcataagaactgtcctttcgcctatg 437  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10370343 catttgtaaatcatttcagttttttgcataagaactgtcctttcgcctatg 10370293  T

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Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 10370786 - 10370717
Alignment:
Q  19 cttctaatctatagactccttattatcatacataaattttgaacaaatttctgaaaaacaattctgacaa 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10370786 cttctaatctatagactccttattatcatacataaattttgaacaaatttctgaaaaacaattctgacaa 10370717  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 10346567 - 10346498
Alignment:
Q  19 cttctaatctatagactccttattatcatacataaattttgaacaaatttctgaaaaacaattctgacaa 88  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  10346567 cttctaatgtatagactccttattatcatacataaattttgaacaaatttctgaaaaacagttctcacaa 10346498  T

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Target: chr2; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 10351037 - 10350970
Alignment:
Q  19 cttctaatctatagactccttattatcatacataaattttgaacaaatttctgaaaaacaattctgacaa 88  Q
    |||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||    
T  10351037 cttctagtctatagactccttattatcataca--aattttgaacaaatttctgaaaaacaattcggacaa 10350970  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 245 - 366
Target Start/End: Complemental strand, 10350827 - 10350697
Alignment:
Q  245 aatttcattttgtagtttttattg-agaataggaaaatcaagttgaaa--------tgtgataagcattaatgctgtattagtttgagttgaattgcaac 335  Q
    |||||||||||||||||||| ||  ||||| |||||||||||||||||        |||||||||||||| |  |  |||| ||||||||||||||||||    
T  10350827 aatttcattttgtagttttttttttagaattggaaaatcaagttgaaagagaatactgtgataagcattagtattccattactttgagttgaattgcaac 10350728  T
Q  336 tgtgatgggtaatgctttgttttaagcaact 366  Q
    |||||||||| || ||  |||||||||||||    
T  10350727 tgtgatgggtgatactaagttttaagcaact 10350697  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 324 - 366
Target Start/End: Complemental strand, 10346250 - 10346208
Alignment:
Q  324 ttgaattgcaactgtgatgggtaatgctttgttttaagcaact 366  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  10346250 ttgaattgcaactgtgatgggtaatgcttcgttttaagcaact 10346208  T

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Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 387 - 437
Target Start/End: Complemental strand, 10350608 - 10350558
Alignment:
Q  387 cttttgtaaatcatttcagttttttgcataagaactgtcctttcgcctatg 437  Q
    |||||||||||||||||| ||||||||| ||||||||||| ||||||||||    
T  10350608 cttttgtaaatcatttcaattttttgcaaaagaactgtccgttcgcctatg 10350558  T

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Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 10340138 - 10340081
Alignment:
Q  142 aaatcatttttagccaaacctaagaatgatactattatagttttaggaatttgtaaat 199  Q
    |||||||||||||| |||  ||||||||||||| ||||||||||||||||||| ||||    
T  10340138 aaatcatttttagcaaaatgtaagaatgatactgttatagttttaggaatttggaaat 10340081  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 291
Target Start/End: Complemental strand, 10340042 - 10339996
Alignment:
Q  245 aatttcattttgtagtttttattgagaataggaaaatcaagttgaaa 291  Q
    |||||||||||||||||||||||  ||||||||| ||||||||||||    
T  10340042 aatttcattttgtagtttttattttgaataggaagatcaagttgaaa 10339996  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 88
Target Start/End: Complemental strand, 10340301 - 10340267
Alignment:
Q  54 attttgaacaaatttctgaaaaacaattctgacaa 88  Q
    ||||||||||||||||||||||| |||||||||||    
T  10340301 attttgaacaaatttctgaaaaataattctgacaa 10340267  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 10346291 - 10346253
Alignment:
Q  245 aatttcattttgtagtttttattgagaataggaaaatca 283  Q
    |||||| ||||||||||||||||||||||||||| ||||    
T  10346291 aatttctttttgtagtttttattgagaataggaagatca 10346253  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 10346381 - 10346328
Alignment:
Q  146 catttttagccaaacctaagaatgatactattatagttttaggaatttgtaaat 199  Q
    |||||||| |||||  ||||||||||||| ||||||||||| ||||||| ||||    
T  10346381 catttttacccaaatgtaagaatgatactgttatagttttatgaatttggaaat 10346328  T

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Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 142 - 366
Target Start/End: Complemental strand, 26573634 - 26573416
Alignment:
Q  142 aaatcatttttagccaaacctaagaatgatactattatagttttaggaatttgtaaatttgtaaatgtgtgttacatgattttggaacattattannnnn 241  Q
    |||||||||||||||| |  |||| |||||||| ||||||||||||||||||| ||||        ||||||| ||||||||||||||||| ||          
T  26573634 aaatcatttttagccatatgtaagtatgatactgttatagttttaggaatttggaaat--------gtgtgttgcatgattttggaacattttt-----t 26573548  T
Q  242 nnnaatttcattttgtagtttttattgagaataggaaaatcaagttgaaa-------tgtgataagcattaatgctgtattagtttgagttgaattgcaa 334  Q
       ||||||||||||||||||||||||||||| |||||||||||||||||       |||||||||||||| |  || |||| |||||||||||||||||    
T  26573547 tttaatttcattttgtagtttttattgagaattggaaaatcaagttgaaagatatactgtgataagcattagttttgcattactttgagttgaattgcaa 26573448  T
Q  335 ctgtgatgggtaatgctttgttttaagcaact 366  Q
    |||||||||||||||||| |||||||||||||    
T  26573447 ctgtgatgggtaatgcttcgttttaagcaact 26573416  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 26573828 - 26573759
Alignment:
Q  19 cttctaatctatagactccttattatcatacataaattttgaacaaatttctgaaaaacaattctgacaa 88  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26573828 cttctagtctatagactcctcattatcatacataaattttgaacaaatttttgaaaaacaattctgacaa 26573759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 387 - 437
Target Start/End: Complemental strand, 26573323 - 26573271
Alignment:
Q  387 cttttgtaaatcatttcagtttttt--gcataagaactgtcctttcgcctatg 437  Q
    |||||||||||||||||| ||||||  ||| ||||||||||||||||||||||    
T  26573323 cttttgtaaatcatttcatttttttttgcaaaagaactgtcctttcgcctatg 26573271  T

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Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 10857157 - 10857221
Alignment:
Q  19 cttctaatctatagactccttattatcatacataaattttgaacaaatttctgaaaaacaattct 83  Q
    |||||| |||||||||||||||||||| |||||||||||||| || |||||||||||||||||||    
T  10857157 cttctagtctatagactccttattatcgtacataaattttgagcatatttctgaaaaacaattct 10857221  T

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