View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1863_high_104 (Length: 233)
Name: NF1863_high_104
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_high_104 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 10239140 - 10238941
Alignment:
| Q |
16 |
aaaatacgctgtgttcgctgatatacagcttgaaattaatcctcttgacatgattttcggtggttcccccgtaaggtcggatccatcgaaggttccaagg |
115 |
Q |
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| T |
10239140 |
aaaatacgctttgttcgctgatatacagcttgaaattaatcctcttgacatgattttcggtggttccccggtaaggtccgatccatcgaaagttccaagg |
10239041 |
T |
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| Q |
116 |
attggaattctacctcgttatgctgataacgagtcgaagatgaagtggtttgatgttcctgggcttaatattatgcatttgataaacgcatgggatgagg |
215 |
Q |
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| T |
10239040 |
atcggaattctacctcgttatgctgataacgagtcgaagatgaagtggtttgatgttcctgggcttaatattatgcatttgataaacgcatgggatgagg |
10238941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 10230360 - 10230161
Alignment:
| Q |
16 |
aaaatacgctgtgttcgctgatatacagcttgaaattaatcctcttgacatgattttcggtggttcccccgtaaggtcggatccatcgaaggttccaagg |
115 |
Q |
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| T |
10230360 |
aaaatatgctgtgttcgctgatatacagcttgaaatgaatcctcttggcatgattttcggtggttctccggtgagatcggatccatctaaagtttcaagg |
10230261 |
T |
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| Q |
116 |
attggaattctacctcgttatgctgataacgagtcgaagatgaagtggtttgatgttcctgggcttaatattatgcatttgataaacgcatgggatgagg |
215 |
Q |
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| T |
10230260 |
atcggaattctacctcgttatgctaatgacgagtccaagatgaagtggtttgatgttccagggtttaatattatgcatacgataaacgcatgggatgagg |
10230161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 10255465 - 10255661
Alignment:
| Q |
16 |
aaaatacgctgtgttcgctgatatacagcttgaaattaatcctcttgacatgattttcggtggttcccccgtaaggtcggatccatcgaaggttccaagg |
115 |
Q |
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| T |
10255465 |
aaaatacgctgtgtttacggatattcagcttggaatgaatcctcttgacatgatttccggtggttctccggtaggttccgatccttcaaaggtttcaagg |
10255564 |
T |
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| Q |
116 |
attggaattctacctcgttatgctgataacgagtcgaagatgaagtggtttgatgttcctgggcttaatattatgcatttgataaacgcatgggatg |
212 |
Q |
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| T |
10255565 |
atcggaattctaccgagatatgctagtgatgagtcgaagatgaaatggtttgatgtgccagggtttaatattatgcacgcgataaactcatgggatg |
10255661 |
T |
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