View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1863_high_110 (Length: 226)
Name: NF1863_high_110
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_high_110 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 5 - 226
Target Start/End: Complemental strand, 31881992 - 31881773
Alignment:
| Q |
5 |
agtggatattatccacaatatcctcaatatagagacggtaagtatgtctaattgagtagcaatcatttttctccggcttccaaacaagtctatatgtgtt |
104 |
Q |
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| T |
31881992 |
agtggatattatccacaatatcctcaatatagagacggtaagtatgtctaactgagtagcaatcatttttctccagcttccaaacaagtctatatgtgtt |
31881893 |
T |
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| Q |
105 |
aacccatattgaaataatagagaattgttccacatttgttttgacgtatttaggctggatcatatatttaaaatttcccatattcttgcatcagtgccac |
204 |
Q |
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| T |
31881892 |
aacccatattgaaataatagagaattgttccacatttgttttgacgtatttaggctggatcatatattt--aatttcccatattcttgcatcagtgccac |
31881795 |
T |
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| Q |
205 |
atcctaccttggttgtcttgta |
226 |
Q |
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| T |
31881794 |
atcctaccttggttgtcttgta |
31881773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 31886063 - 31885964
Alignment:
| Q |
125 |
agaattgttccacatttgttttgacgtatttaggctggatcatatatttaaaatttcccatattcttgcatcagtgccacatcctaccttggttgtcttg |
224 |
Q |
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| T |
31886063 |
agaattgttccacatttgttttgatgtatttaggttggatcatatattt--aatttcccatatttttgcatcagtggcacatcctactttgtttgtattg |
31885966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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